Rmu_ssc0000347.1_g000006

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000347.1
OG0006740
Physical Location & Seq
Forward (+)
25347 .. 25613
267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000347.1_g000006.1.cds

Sequence Viewer

Length: 267 bp
atggcaggatcggaacaagcgaaggcaggaggcccagcagaggcgatgaagggtgcagcacaggggatgcatacaacagaggtgcttcatcaacggtcgaaagcgcctgtctgccccatgagaatggctgttggtggcattgctatcgtcgtcaccctcggttacttaaccttatactccaagaagaagcccgaggcatctgctcttgatgttgccaaagttgccacaggaatcgctcatcaagaaaacactcaccccggcaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.05

Weight (kDa)

9.46

Isoelectric Point (pI)

30.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 16
AfiI CCNNNNNNNGG 1 cut(s) 40
AlwI GGATC 1 cut(s) 16
Ama87I CYCGRG 1 cut(s) 191
AoxI GGCC 1 cut(s) 31
ApeKI GCWGC 1 cut(s) 56
AspLEI GCGC 1 cut(s) 106
AspS9I GGNCC 1 cut(s) 32
AsuC2I CCSGG 1 cut(s) 258
AsuHPI GGTGA 2 cut(s) 145, 245
AvaI CYCGRG 1 cut(s) 191
BbvI GCAGC 1 cut(s) 68
BcgI CGANNNNNNTGC 4 cut(s) 127, 161, 182, 216
BcnI CCSGG 1 cut(s) 258
BfoI RGCGCY 1 cut(s) 107
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 258
BmeT110I CYCGRG 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 32
BmrFI CCNGG 1 cut(s) 258
BmsI GCATC 2 cut(s) 57, 206
BpuMI CCSGG 1 cut(s) 258
BsaJI CCNNGG 3 cut(s) 157, 192, 256
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse3DI GCAATG 1 cut(s) 138
BseDI CCNNGG 3 cut(s) 157, 192, 256
BseGI GGATG 1 cut(s) 72
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMI GCAATG 1 cut(s) 138
BseXI GCAGC 1 cut(s) 68
BseYI CCCAGC 1 cut(s) 34
BsgI GTGCAG 1 cut(s) 75
Bsh1285I CGRYCG 1 cut(s) 98
BshFI GGCC 1 cut(s) 33
BsiEI CGRYCG 1 cut(s) 98
BsiHKCI CYCGRG 1 cut(s) 191
BsiSI CCGG 1 cut(s) 258
BslI CCNNNNNNNGG 1 cut(s) 40
BsnI GGCC 1 cut(s) 33
BsoBI CYCGRG 1 cut(s) 191
Bsp143I GATC 1 cut(s) 8
BspANI GGCC 1 cut(s) 33
BspPI GGATC 1 cut(s) 16
BsrDI GCAATG 1 cut(s) 138
BssECI CCNNGG 3 cut(s) 157, 192, 256
BssMI GATC 1 cut(s) 8
Bst4CI ACNGT 1 cut(s) 96
BstF5I GGATG 1 cut(s) 72
BstH2I RGCGCY 1 cut(s) 107
BstHHI GCGC 1 cut(s) 106
BstKTI GATC 1 cut(s) 11
BstMBI GATC 1 cut(s) 8
BstMCI CGRYCG 1 cut(s) 98
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 256
BstV1I GCAGC 1 cut(s) 68
BstXI CCANNNNNNTGG 1 cut(s) 124
BsuRI GGCC 1 cut(s) 33
BtgZI GCGATG 1 cut(s) 59
BtsCI GGATG 1 cut(s) 72
CfoI GCGC 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 32
CviAII CATG 1 cut(s) 118
CviJI RGCY 3 cut(s) 33, 128, 190
CviKI_1 RGCY 3 cut(s) 33, 128, 190
DpnI GATC 1 cut(s) 10
DpnII GATC 1 cut(s) 8
Eco88I CYCGRG 1 cut(s) 191
EcoT22I ATGCAT 1 cut(s) 72
FaeI CATG 1 cut(s) 121
FaiI YATR 3 cut(s) 72, 119, 175
FatI CATG 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 1 cut(s) 79
Fsp4HI GCNGC 1 cut(s) 57
GlaI GCGC 1 cut(s) 105
GluI GCNGC 1 cut(s) 57
GsaI CCCAGC 1 cut(s) 38
HaeII RGCGCY 1 cut(s) 107
HaeIII GGCC 1 cut(s) 33
HapII CCGG 1 cut(s) 258
HhaI GCGC 1 cut(s) 106
Hin1II CATG 1 cut(s) 121
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HinfI GANTC 1 cut(s) 231
HpaII CCGG 1 cut(s) 258
HphI GGTGA 2 cut(s) 145, 245
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 2 cut(s) 206, 242
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 2 cut(s) 16, 43
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4V TGCA 2 cut(s) 56, 70
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
Hsp92II CATG 1 cut(s) 121
HspAI GCGC 1 cut(s) 104
Kzo9I GATC 1 cut(s) 8
LpnPI CCDG 5 cut(s) 12, 47, 48, 120, 213
Lsp1109I GCAGC 1 cut(s) 68
LweI GCATC 2 cut(s) 57, 206
MaeIII GTNAC 2 cut(s) 151, 161
MalI GATC 1 cut(s) 10
MboI GATC 1 cut(s) 8
MboII GAAGA 1 cut(s) 196
MnlI CCTC 5 cut(s) 23, 34, 73, 167, 187
Mph1103I ATGCAT 1 cut(s) 72
MseI TTAA 1 cut(s) 167
MslI CAYNNNNRTG 1 cut(s) 122
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 221
NciI CCSGG 1 cut(s) 258
NdeII GATC 1 cut(s) 8
NlaIII CATG 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 151
NsiI ATGCAT 1 cut(s) 72
PcsI WCGNNNNNNNCGW 1 cut(s) 17
PfeI GAWTC 1 cut(s) 231
PkrI GCNGC 1 cut(s) 58
PspFI CCCAGC 1 cut(s) 34
PspPI GGNCC 1 cut(s) 32
RseI CAYNNNNRTG 1 cut(s) 122
SaqAI TTAA 1 cut(s) 167
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 1 cut(s) 8
Sau96I GGNCC 1 cut(s) 32
ScrFI CCNGG 1 cut(s) 258
SetI ASST 2 cut(s) 84, 173
SfaNI GCATC 2 cut(s) 57, 206
SmiMI CAYNNNNRTG 1 cut(s) 122
StyD4I CCNGG 1 cut(s) 256
TaaI ACNGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 98
TfiI GAWTC 1 cut(s) 231
Tru1I TTAA 1 cut(s) 167
Tru9I TTAA 1 cut(s) 167
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 2 cut(s) 62, 77
Zsp2I ATGCAT 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.