Rh6BG408000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0006740
Physical Location & Seq
Forward (+)
63387839 .. 63388150
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG408000.1

Sequence Viewer

Length: 312 bp
ATGAGTCCAGAGGAAGTGAAAAGGGCAGGAGTGGAGGGATCAAAAAGGCCACCTGGCCATAACCCTGGGGGTGTTCTTCACCAGAGGCGCAACCTTCCTATTAGCCCCACAGGGATGCTCCTCGGTGGCTTCCTCATCTGCACCACCATAGGCTACTTCACCCTCTACGCCATGAAAAAACCCGAAGCCTCTGCACGAGATGTTGCCAGGGTTTCCACCAATATCGCCGACCCTGAGGACACAAAACCCAGGCCGGGTGACACAGTGACCACGCCAGGCCGGAAGGGAACTAGTAGTAGCGCTGTCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

10.93

Weight (kDa)

9.8

Isoelectric Point (pI)

59.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 46
AcoI YGGCCR 1 cut(s) 55
AfeI AGCGCT 1 cut(s) 301
AfiI CCNNNNNNNGG 1 cut(s) 254
AhlI ACTAGT 1 cut(s) 290
AjnI CCWGG 5 cut(s) 52, 64, 206, 248, 274
AlwI GGATC 1 cut(s) 46
Aor51HI AGCGCT 1 cut(s) 301
AoxI GGCC 4 cut(s) 47, 55, 251, 277
AspLEI GCGC 2 cut(s) 90, 302
AsuC2I CCSGG 1 cut(s) 255
AsuHPI GGTGA 3 cut(s) 71, 151, 269
AxyI CCTNAGG 1 cut(s) 234
BalI TGGCCA 1 cut(s) 57
BauI CACGAG 1 cut(s) 195
BcgI CGANNNNNNTGC 2 cut(s) 173, 207
BciT130I CCWGG 5 cut(s) 54, 66, 208, 250, 276
BcnI CCSGG 1 cut(s) 255
BcuI ACTAGT 1 cut(s) 290
BfaI CTAG 1 cut(s) 291
BfoI RGCGCY 1 cut(s) 303
Bme1390I CCNGG 6 cut(s) 54, 66, 208, 250, 255, 276
BmrFI CCNGG 6 cut(s) 54, 66, 208, 250, 255, 276
BmsI GCATC 1 cut(s) 105
BpuMI CCSGG 1 cut(s) 255
BsaJI CCNNGG 5 cut(s) 64, 65, 121, 207, 248
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse21I CCTNAGG 1 cut(s) 234
BseBI CCWGG 5 cut(s) 54, 66, 208, 250, 276
BseDI CCNNGG 5 cut(s) 64, 65, 121, 207, 248
BseGI GGATG 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMII CTCAG 1 cut(s) 225
BseRI GAGGAG 1 cut(s) 110
BsgI GTGCAG 2 cut(s) 124, 177
BshFI GGCC 4 cut(s) 49, 57, 253, 279
BsiSI CCGG 2 cut(s) 254, 280
BslI CCNNNNNNNGG 1 cut(s) 254
BsnI GGCC 4 cut(s) 49, 57, 253, 279
Bsp143I GATC 1 cut(s) 38
BspANI GGCC 4 cut(s) 49, 57, 253, 279
BspCNI CTCAG 1 cut(s) 226
BspPI GGATC 1 cut(s) 46
BssECI CCNNGG 5 cut(s) 64, 65, 121, 207, 248
BssMI GATC 1 cut(s) 38
BssSI CACGAG 1 cut(s) 195
Bst2BI CACGAG 1 cut(s) 195
Bst2UI CCWGG 5 cut(s) 54, 66, 208, 250, 276
Bst4CI ACNGT 1 cut(s) 265
BstDEI CTNAG 1 cut(s) 234
BstF5I GGATG 1 cut(s) 120
BstH2I RGCGCY 1 cut(s) 303
BstHHI GCGC 2 cut(s) 90, 302
BstKTI GATC 1 cut(s) 41
BstMBI GATC 1 cut(s) 38
BstNI CCWGG 5 cut(s) 54, 66, 208, 250, 276
BstSCI CCNGG 6 cut(s) 52, 64, 206, 248, 253, 274
BstXI CCANNNNNNTGG 1 cut(s) 65
Bsu36I CCTNAGG 1 cut(s) 234
BsuRI GGCC 4 cut(s) 49, 57, 253, 279
BtsCI GGATG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 270
CfoI GCGC 2 cut(s) 90, 302
CviAII CATG 1 cut(s) 172
CviJI RGCY 8 cut(s) 49, 57, 105, 129, 153, 188, 253, 279
CviKI_1 RGCY 8 cut(s) 49, 57, 105, 129, 153, 188, 253, 279
DdeI CTNAG 1 cut(s) 234
DpnI GATC 1 cut(s) 40
DpnII GATC 1 cut(s) 38
EaeI YGGCCR 1 cut(s) 55
Eco47III AGCGCT 1 cut(s) 301
Eco81I CCTNAGG 1 cut(s) 234
EcoRII CCWGG 5 cut(s) 52, 64, 206, 248, 274
FaeI CATG 1 cut(s) 175
FaiI YATR 3 cut(s) 60, 149, 173
FatI CATG 1 cut(s) 171
FokI GGATG 1 cut(s) 127
FspBI CTAG 1 cut(s) 291
GlaI GCGC 2 cut(s) 89, 301
HaeII RGCGCY 1 cut(s) 303
HaeIII GGCC 4 cut(s) 49, 57, 253, 279
HapII CCGG 2 cut(s) 254, 280
HhaI GCGC 2 cut(s) 90, 302
Hin1II CATG 1 cut(s) 175
Hin6I GCGC 2 cut(s) 88, 300
HinP1I GCGC 2 cut(s) 88, 300
HinfI GANTC 1 cut(s) 4
HpaII CCGG 2 cut(s) 254, 280
HphI GGTGA 3 cut(s) 71, 151, 269
Hpy188III TCNNGA 1 cut(s) 8
HpyAV CCTTC 2 cut(s) 104, 277
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 2 cut(s) 141, 194
HpyF3I CTNAG 1 cut(s) 234
Hsp92II CATG 1 cut(s) 175
HspAI GCGC 2 cut(s) 88, 300
Kzo9I GATC 1 cut(s) 38
LmnI GCTCC 1 cut(s) 123
LweI GCATC 1 cut(s) 105
MaeI CTAG 1 cut(s) 291
MaeIII GTNAC 2 cut(s) 257, 265
MalI GATC 1 cut(s) 40
MboI GATC 1 cut(s) 38
MboII GAAGA 1 cut(s) 68
MlsI TGGCCA 1 cut(s) 57
MluNI TGGCCA 1 cut(s) 57
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 8 cut(s) 4, 28, 78, 131, 143, 173, 199, 229
Mox20I TGGCCA 1 cut(s) 57
MscI TGGCCA 1 cut(s) 57
MslI CAYNNNNRTG 1 cut(s) 113
Msp20I TGGCCA 1 cut(s) 57
MspI CCGG 2 cut(s) 254, 280
MspR9I CCNGG 6 cut(s) 54, 66, 208, 250, 255, 276
MvaI CCWGG 5 cut(s) 54, 66, 208, 250, 276
NciI CCSGG 1 cut(s) 255
NdeII GATC 1 cut(s) 38
NlaIII CATG 1 cut(s) 175
NmuCI GTSAC 2 cut(s) 257, 265
PasI CCCWGGG 1 cut(s) 65
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
Psp6I CCWGG 5 cut(s) 52, 64, 206, 248, 274
PspGI CCWGG 5 cut(s) 52, 64, 206, 248, 274
RseI CAYNNNNRTG 1 cut(s) 113
Sau3AI GATC 1 cut(s) 38
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 6 cut(s) 54, 66, 208, 250, 255, 276
SetI ASST 2 cut(s) 55, 96
SfaNI GCATC 1 cut(s) 105
SmiMI CAYNNNNRTG 1 cut(s) 113
SpeI ACTAGT 1 cut(s) 290
SspMI CTAG 1 cut(s) 291
StyD4I CCNGG 6 cut(s) 52, 64, 206, 248, 253, 274
TaaI ACNGT 1 cut(s) 265
TscAI CASTG 1 cut(s) 270
TseFI GTSAC 2 cut(s) 257, 265
Tsp45I GTSAC 2 cut(s) 257, 265
TspDTI ATGAA 1 cut(s) 188
TspRI CASTG 1 cut(s) 270
XspI CTAG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.