Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013909

Physical Location & Seq

Genomic Coordinates Forward (+)

16340907 .. 16343118

Gene Structure 2212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G34120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGGTTCAATCTCTTTATCCAATTCTATGCCCATAACTCGACTTCCACTACTTACATCACTCTATCATCAAAGCTTCCTTCCGATTTCTTCTTCATCTTTCTCTCTTCTTCCTCTCTCTAATCGTCGTCGCTCCTCCACTTTTTCACCGTCAATCACCGTCTCTGCCTTCTTCGCTGCTCCTGCCAGCGTTAATAATAATAACTCTGTTCCGGCAAAAAATGGAGGTTACACAGTTGGGGATTTCATGACTCCGAGACAGAATTTGCACGTTGTTAAGCCCTCTACGTCGGTCGATGATGCGTTGGAACTTCTGGTTGAGAAGAAAGTCACGGGATTGCCTGTAATTGACGATAATTGGACACTGGTTGGTGTTGTTTCTGATTACGATTTGCTTGCATTGGACTCCATCTCTGGTCGCAGTCAAAATGATACAAACTTGTTCCCTGATGTCGACAGTACCTGGAAAACGTTTAACGAACTACAGAAACTGATCAGTAAGACATATGGAAAAGTTGTTGGAGACTTGATGACACCGTCTCCTCTCGTTGTCCGTGATTCTACCAATTTAGAAGATGCAGCCAGGTTGCTTCTGGAAACAAAGTTCCGAAGATTACCCGTTGTTGATGCTGATGGAAAACTGATTGGGATCCTTACAAGGGGAAACGTTGTAAGGGCTGCGCTGCAGATCAAACGGGAAACCGAGAACTCTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0019725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

238

Amino Acids

25.96

Weight (kDa)

7.94

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	79 - 133	7.4e-14	CBS domain
CBS	PF00571	173 - 227	9.3e-17	CBS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34120
fragaria_vesca	FvH4_2g05710 FvH4_2g05710
malus_domestica	MD05G1085200.v1.1
prunus_persica	Prupe.8G129500_v2.0.a1
pyrus_communis	pycom05g08450 pycom1609g00040
rosa_chinensis	RchiOBHm_Chr6g0256581
rosa_laevigata	RLG00000014753
rosa_multiflora	Rmu_sc0003012.1_g000012
rosa_roxburghii	Rroxscaffold_7G00209210
rosa_rugosa	Rorug05G0564700
rosa_samantha	Rh6AG082500 Rh6BG075200 Rh6CG071800 Rh6DG069000
rosa_wichuraiana	Rw6G007430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	453
AclI	AACGTT	2 cut(s)	470, 666
AclWI	GGATC	2 cut(s)	643, 656
AcsI	RAATTY	1 cut(s)	262
AfaI	GTAC	1 cut(s)	460
AfiI	CCNNNNNNNGG	1 cut(s)	658
AgsI	TTSAA	1 cut(s)	9
AjnI	CCWGG	2 cut(s)	461, 581
AloI	GAACNNNNNNTCC	2 cut(s)	587, 619
AluBI	AGCT	1 cut(s)	75
AluI	AGCT	1 cut(s)	75
Alw26I	GTCTC	4 cut(s)	166, 250, 516, 543
AlwI	GGATC	2 cut(s)	643, 656
AlwNI	CAGNNNCTG	2 cut(s)	462, 490
ApeKI	GCWGC	4 cut(s)	176, 578, 677, 682
ApoI	RAATTY	1 cut(s)	262
AspLEI	GCGC	1 cut(s)	682
AsuHPI	GGTGA	2 cut(s)	138, 148
BamHI	GGATCC	1 cut(s)	648
BbvI	GCAGC	4 cut(s)	163, 590, 664, 669
BccI	CCATC	2 cut(s)	416, 626
BcgI	CGANNNNNNTGC	2 cut(s)	377, 411
BciT130I	CCWGG	2 cut(s)	463, 583
BclI	TGATCA	1 cut(s)	492
BcoDI	GTCTC	4 cut(s)	166, 250, 516, 543
BfmI	CTRYAG	2 cut(s)	482, 683
BisI	GCNGC	4 cut(s)	177, 579, 678, 683
BlsI	GCNGC	4 cut(s)	178, 580, 679, 684
Bme1390I	CCNGG	2 cut(s)	463, 583
BmiI	GGNNCC	1 cut(s)	650
BmrFI	CCNGG	2 cut(s)	463, 583
BmsI	GCATC	3 cut(s)	289, 565, 616
BsaBI	GATNNNNATC	1 cut(s)	647
BsaXI	ACNNNNNCTCC	2 cut(s)	523, 553
Bsc4I	CCNNNNNNNGG	1 cut(s)	658
Bse1I	ACTGG	1 cut(s)	369
Bse8I	GATNNNNATC	1 cut(s)	647
BseBI	CCWGG	2 cut(s)	463, 583
BseJI	GATNNNNATC	1 cut(s)	647
BseLI	CCNNNNNNNGG	1 cut(s)	658
BseNI	ACTGG	1 cut(s)	369
BseRI	GAGGAG	2 cut(s)	124, 531
BseXI	GCAGC	4 cut(s)	163, 590, 664, 669
Bsh1285I	CGRYCG	1 cut(s)	294
BsiEI	CGRYCG	1 cut(s)	294
BsiSI	CCGG	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	658
BsmAI	GTCTC	4 cut(s)	166, 250, 516, 543
BsmBI	CGTCTC	2 cut(s)	166, 543
Bsp143I	GATC	3 cut(s)	492, 648, 687
BspHI	TCATGA	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	650
BspMAI	CTGCAG	1 cut(s)	687
BspPI	GGATC	2 cut(s)	643, 656
BsrI	ACTGG	1 cut(s)	369
BssMI	GATC	3 cut(s)	492, 648, 687
Bst2UI	CCWGG	2 cut(s)	463, 583
Bst4CI	ACNGT	5 cut(s)	150, 160, 235, 458, 537
Bst6I	CTCTTC	1 cut(s)	111
BstC8I	GCNNGC	2 cut(s)	187, 396
BstHHI	GCGC	1 cut(s)	682
BstKTI	GATC	3 cut(s)	495, 651, 690
BstMAI	GTCTC	4 cut(s)	166, 250, 516, 543
BstMBI	GATC	3 cut(s)	492, 648, 687
BstMCI	CGRYCG	1 cut(s)	294
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 182
BstNI	CCWGG	2 cut(s)	463, 583
BstSCI	CCNGG	2 cut(s)	461, 581
BstSFI	CTRYAG	2 cut(s)	482, 683
BstV1I	GCAGC	4 cut(s)	163, 590, 664, 669
BstX2I	RGATCY	1 cut(s)	648
BstYI	RGATCY	1 cut(s)	648
BtsIMutI	CAGTG	1 cut(s)	362
Cac8I	GCNNGC	2 cut(s)	187, 396
CaiI	CAGNNNCTG	2 cut(s)	462, 490
CciI	TCATGA	1 cut(s)	246
CfoI	GCGC	1 cut(s)	682
Csp6I	GTAC	1 cut(s)	459
CviAII	CATG	1 cut(s)	247
CviJI	RGCY	4 cut(s)	75, 280, 581, 677
CviKI_1	RGCY	4 cut(s)	75, 280, 581, 677
CviQI	GTAC	1 cut(s)	459
DpnI	GATC	3 cut(s)	494, 650, 689
DpnII	GATC	3 cut(s)	492, 648, 687
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
EcoRII	CCWGG	2 cut(s)	461, 581
Esp3I	CGTCTC	2 cut(s)	166, 543
FaeI	CATG	1 cut(s)	250
FaiI	YATR	6 cut(s)	29, 35, 248, 505, 507, 715
FatI	CATG	1 cut(s)	246
FauNDI	CATATG	1 cut(s)	505
FbaI	TGATCA	1 cut(s)	492
FblI	GTMKAC	1 cut(s)	453
Fnu4HI	GCNGC	4 cut(s)	177, 579, 678, 683
Fsp4HI	GCNGC	4 cut(s)	177, 579, 678, 683
GlaI	GCGC	1 cut(s)	681
GluI	GCNGC	4 cut(s)	177, 579, 678, 683
HapII	CCGG	1 cut(s)	212
HhaI	GCGC	1 cut(s)	682
Hin1II	CATG	1 cut(s)	250
Hin6I	GCGC	1 cut(s)	680
HinP1I	GCGC	1 cut(s)	680
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HindIII	AAGCTT	1 cut(s)	73
HinfI	GANTC	3 cut(s)	250, 404, 557
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	2 cut(s)	138, 148
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	4 cut(s)	84, 255, 382, 608
Hpy188III	TCNNGA	2 cut(s)	247, 593
Hpy8I	GTNNAC	1 cut(s)	454
Hpy99I	CGWCG	3 cut(s)	129, 132, 292
HpyAV	CCTTC	2 cut(s)	89, 178
HpyCH4III	ACNGT	5 cut(s)	150, 160, 235, 458, 537
HpyCH4IV	ACGT	4 cut(s)	270, 287, 470, 666
HpyCH4V	TGCA	4 cut(s)	268, 398, 578, 685
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 182
HpySE526I	ACGT	4 cut(s)	270, 287, 470, 666
Hsp92II	CATG	1 cut(s)	250
HspAI	GCGC	1 cut(s)	680
Ksp22I	TGATCA	1 cut(s)	492
Kzo9I	GATC	3 cut(s)	492, 648, 687
LmnI	GCTCC	2 cut(s)	137, 184
Lsp1109I	GCAGC	4 cut(s)	163, 590, 664, 669
LweI	GCATC	3 cut(s)	289, 565, 616
MaeII	ACGT	4 cut(s)	270, 287, 470, 666
MaeIII	GTNAC	2 cut(s)	227, 328
MalI	GATC	3 cut(s)	494, 650, 689
MboI	GATC	3 cut(s)	492, 648, 687
MboII	GAAGA	8 cut(s)	81, 84, 98, 101, 163, 334, 584, 621
MflI	RGATCY	1 cut(s)	648
MluCI	AATT	5 cut(s)	22, 262, 345, 355, 565
MlyI	GAGTC	2 cut(s)	244, 398
MmeI	TCCRAC	2 cut(s)	285, 499
MnlI	CCTC	5 cut(s)	123, 145, 218, 292, 552
MseI	TTAA	3 cut(s)	192, 276, 474
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	2 cut(s)	463, 583
MvaI	CCWGG	2 cut(s)	463, 583
MwoI	GCNNNNNNNGC	2 cut(s)	173, 182
NdeI	CATATG	1 cut(s)	505
NdeII	GATC	3 cut(s)	492, 648, 687
NlaIII	CATG	1 cut(s)	250
NlaIV	GGNNCC	1 cut(s)	650
NmuCI	GTSAC	1 cut(s)	328
PagI	TCATGA	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	557
PflFI	GACNNNGTC	1 cut(s)	535
PkrI	GCNGC	4 cut(s)	178, 580, 679, 684
PleI	GAGTC	2 cut(s)	244, 398
PpsI	GAGTC	2 cut(s)	244, 398
Psp1406I	AACGTT	2 cut(s)	470, 666
Psp6I	CCWGG	2 cut(s)	461, 581
PspGI	CCWGG	2 cut(s)	461, 581
PspN4I	GGNNCC	1 cut(s)	650
PstI	CTGCAG	1 cut(s)	687
PstNI	CAGNNNCTG	2 cut(s)	462, 490
PsuI	RGATCY	1 cut(s)	648
PsyI	GACNNNGTC	1 cut(s)	535
RsaI	GTAC	1 cut(s)	460
RsaNI	GTAC	1 cut(s)	459
SalI	GTCGAC	1 cut(s)	452
SaqAI	TTAA	3 cut(s)	192, 276, 474
SatI	GCNGC	4 cut(s)	177, 579, 678, 683
Sau3AI	GATC	3 cut(s)	492, 648, 687
SchI	GAGTC	2 cut(s)	244, 398
ScrFI	CCNGG	2 cut(s)	463, 583
SetI	ASST	8 cut(s)	77, 229, 273, 290, 464, 473, 587, 669
SfaNI	GCATC	3 cut(s)	289, 565, 616
SfcI	CTRYAG	2 cut(s)	482, 683
Sse9I	AATT	5 cut(s)	22, 262, 345, 355, 565
StyD4I	CCNGG	2 cut(s)	461, 581
TaaI	ACNGT	5 cut(s)	150, 160, 235, 458, 537
TaiI	ACGT	4 cut(s)	273, 290, 473, 669
TaqI	TCGA	3 cut(s)	40, 294, 453
TaqII	GACCGA	1 cut(s)	280
TasI	AATT	5 cut(s)	22, 262, 345, 355, 565
TfiI	GAWTC	1 cut(s)	557
Tru1I	TTAA	3 cut(s)	192, 276, 474
Tru9I	TTAA	3 cut(s)	192, 276, 474
TscAI	CASTG	1 cut(s)	369
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	4 cut(s)	176, 578, 677, 682
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	2 cut(s)	84, 235
TspGWI	ACGGA	1 cut(s)	542
TspRI	CASTG	1 cut(s)	369
Tth111I	GACNNNGTC	1 cut(s)	535
XapI	RAATTY	1 cut(s)	262
XcmI	CCANNNNNNNNNTGG	1 cut(s)	589
XmiI	GTMKAC	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.