Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007482

Physical Location & Seq

Genomic Coordinates Forward (+)

75595587 .. 75600452

Gene Structure 4866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0564700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGGGAGAGGTAGAGGAAAGGGAAAGAGGTTAACTGTCACCAATCATGATGATCCTGGAAGCGGCGAGGAAGAGAAAATACCCGCACAAAAGAGAAGGGGAAGACCACTAAAGCCTTTAAAGGATGAGATTGATGAAGAAGAAGTAGAAAAAGTAGAAGCAGATGATATTGAGAATGCAAAGGCGGGTATTTCAAGTAAGGAGATAAAAAGCCCCTCTGCAGCAGAGAATGGAAAGAAGAGGAAGCGGTATTCACAGGCCAAGGAGAAGTCGGATTCAGTGAAGGAGGAAAACGGTAATGGAACACGATCAAGTACAGATGACTCAACTAAATCTAATGGATTTCGGCATAATGGGAGCAGGCGGAAAAATAAACCCCGTCGAGCTGCTGAGGCTGGGGTTGAATGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

137

Amino Acids

15.12

Weight (kDa)

9.62

Isoelectric Point (pI)

56.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007482)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05690 FvH4_2g05700
malus_domestica	MD05G1085400.v1.1 MD05G1085600.v1.1
prunus_persica	Prupe.8G129600_v2.0.a1 Prupe.8G129700_v2.0.a1
pyrus_communis	pycom05g08480 pycom05g08490
rosa_chinensis	RchiOBHm_Chr5g0039721 RchiOBHm_Chr6g0256571
rosa_laevigata	RLG00000014758 RLG00000014761
rosa_multiflora	Rmu_sc0000103.1_g000010 Rmu_sc0003012.1_g000017 Rmu_sc0003012.1_g000019 Rmu_ssc0000052.1_g000002
rosa_roxburghii	Rroxscaffold_7G00209220 Rroxscaffold_7G00209230
rosa_rugosa	Rorug05G0181400 Rorug05G0564700 Rorug05G0564700
rosa_samantha	Rh6BG074800 Rh6CG071700
rosa_wichuraiana	Rw6G007400 Rw6G007420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	63, 84, 185, 247, 364
AclWI	GGATC	1 cut(s)	47
AfaI	GTAC	1 cut(s)	316
AfiI	CCNNNNNNNGG	1 cut(s)	62
AgsI	TTSAA	2 cut(s)	195, 404
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	1 cut(s)	386
AluI	AGCT	1 cut(s)	386
AlwI	GGATC	1 cut(s)	47
AoxI	GGCC	1 cut(s)	258
ApeKI	GCWGC	2 cut(s)	221, 386
AsuHPI	GGTGA	1 cut(s)	31
BarI	GAAGNNNNNNTAC	2 cut(s)	63, 95
BbsI	GAAGAC	1 cut(s)	109
BbvCI	CCTCAGC	1 cut(s)	390
BbvI	GCAGC	2 cut(s)	233, 373
BciT130I	CCWGG	1 cut(s)	57
BfmI	CTRYAG	1 cut(s)	219
BisI	GCNGC	3 cut(s)	64, 222, 387
BlsI	GCNGC	3 cut(s)	65, 223, 388
Bme1390I	CCNGG	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	57
BpiI	GAAGAC	1 cut(s)	109
Bpu10I	CCTNAGC	1 cut(s)	390
BsaJI	CCNNGG	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseMII	CTCAG	1 cut(s)	381
BseXI	GCAGC	2 cut(s)	233, 373
BseYI	CCCAGC	1 cut(s)	395
BshFI	GGCC	1 cut(s)	260
BslI	CCNNNNNNNGG	1 cut(s)	62
BsmI	GAATGC	2 cut(s)	181, 410
BsnI	GGCC	1 cut(s)	260
Bsp143I	GATC	2 cut(s)	52, 308
BspACI	CCGC	5 cut(s)	63, 84, 185, 247, 364
BspANI	GGCC	1 cut(s)	260
BspCNI	CTCAG	1 cut(s)	382
BspHI	TCATGA	1 cut(s)	46
BspMAI	CTGCAG	1 cut(s)	223
BspPI	GGATC	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	2 cut(s)	52, 308
BssT1I	CCWWGG	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	2 cut(s)	37, 296
Bst6I	CTCTTC	2 cut(s)	66, 233
BstC8I	GCNNGC	1 cut(s)	362
BstDEI	CTNAG	1 cut(s)	390
BstF5I	GGATG	1 cut(s)	130
BstKTI	GATC	2 cut(s)	55, 311
BstMBI	GATC	2 cut(s)	52, 308
BstMWI	GCNNNNNNNGC	1 cut(s)	392
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	219
BstV1I	GCAGC	2 cut(s)	233, 373
BstV2I	GAAGAC	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	260
BtsCI	GGATG	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	285
Cac8I	GCNNGC	1 cut(s)	362
CciI	TCATGA	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	315
CviAII	CATG	1 cut(s)	47
CviJI	RGCY	5 cut(s)	115, 213, 260, 386, 395
CviKI_1	RGCY	5 cut(s)	115, 213, 260, 386, 395
CviQI	GTAC	1 cut(s)	315
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	2 cut(s)	54, 310
DpnII	GATC	2 cut(s)	52, 308
DraI	TTTAAA	1 cut(s)	120
Eam1104I	CTCTTC	2 cut(s)	66, 233
EarI	CTCTTC	2 cut(s)	66, 233
EciI	GGCGGA	1 cut(s)	379
Eco130I	CCWWGG	1 cut(s)	261
EcoRII	CCWGG	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	1 cut(s)	50
FaiI	YATR	2 cut(s)	48, 351
FatI	CATG	1 cut(s)	46
FauI	CCCGC	2 cut(s)	91, 178
Fnu4HI	GCNGC	3 cut(s)	64, 222, 387
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	3 cut(s)	64, 222, 387
GluI	GCNGC	3 cut(s)	64, 222, 387
GsaI	CCCAGC	1 cut(s)	399
HaeIII	GGCC	1 cut(s)	260
Hin1II	CATG	1 cut(s)	50
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	2 cut(s)	275, 323
HpaI	GTTAAC	1 cut(s)	33
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	1 cut(s)	33
Hpy99I	CGWCG	1 cut(s)	384
HpyAV	CCTTC	2 cut(s)	90, 277
HpyCH4III	ACNGT	2 cut(s)	37, 296
HpyCH4V	TGCA	3 cut(s)	179, 221, 408
HpyF10VI	GCNNNNNNNGC	1 cut(s)	392
HpyF3I	CTNAG	1 cut(s)	390
Hsp92II	CATG	1 cut(s)	50
KspAI	GTTAAC	1 cut(s)	33
Kzo9I	GATC	2 cut(s)	52, 308
LmnI	GCTCC	1 cut(s)	357
LpnPI	CCDG	5 cut(s)	42, 69, 242, 346, 381
Lsp1109I	GCAGC	2 cut(s)	233, 373
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	2 cut(s)	54, 310
MboI	GATC	2 cut(s)	52, 308
MboII	GAAGA	5 cut(s)	83, 114, 149, 152, 250
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	1 cut(s)	252
MnlI	CCTC	7 cut(s)	8, 21, 61, 226, 234, 280, 385
MseI	TTAA	2 cut(s)	32, 119
MspR9I	CCNGG	1 cut(s)	57
Mva1269I	GAATGC	2 cut(s)	181, 410
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	392
NdeII	GATC	2 cut(s)	52, 308
NlaIII	CATG	1 cut(s)	50
NmuCI	GTSAC	1 cut(s)	37
PagI	TCATGA	1 cut(s)	46
PctI	GAATGC	2 cut(s)	181, 410
PfeI	GAWTC	1 cut(s)	275
PfoI	TCCNGGA	1 cut(s)	55
PkrI	GCNGC	3 cut(s)	65, 223, 388
PleI	GAGTC	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	317
Psp6I	CCWGG	1 cut(s)	55
PspFI	CCCAGC	1 cut(s)	395
PspGI	CCWGG	1 cut(s)	55
PstI	CTGCAG	1 cut(s)	223
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
SaqAI	TTAA	2 cut(s)	32, 119
SatI	GCNGC	3 cut(s)	64, 222, 387
Sau3AI	GATC	2 cut(s)	52, 308
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	1 cut(s)	57
SetI	ASST	3 cut(s)	13, 32, 388
SfcI	CTRYAG	1 cut(s)	219
SsiI	CCGC	5 cut(s)	63, 84, 185, 247, 364
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	2 cut(s)	37, 296
TaqI	TCGA	1 cut(s)	382
TatI	WGTACW	1 cut(s)	314
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	2 cut(s)	32, 119
Tru9I	TTAA	2 cut(s)	32, 119
TscAI	CASTG	1 cut(s)	285
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	2 cut(s)	221, 386
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	1 cut(s)	150
TspRI	CASTG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.