FvH4_2g05700

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0007482
Physical Location & Seq
Reverse (-)
4652760 .. 4654485
1726 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g05700.t1

Sequence Viewer

Length: 1506 bp
ATGGATTCACAAGCTGACCATCCCAAACTTGAAATATTCTTCTTCCCATACATTCTTGGTGGTCACTTGATCCCCATGATAGATTTGGCCAGGCTCTTTTCATCTCATGGAGTGAAAGCCACCATTGTCACAACCCCTCACAATGTCCTCCTCTTCCAAAATCCCATCCTCAGAGACCAACAATTAGGCCATGCCATCAGTTTCGTCACGCTTAATTTCCCGGCAGAGGAGTTCGGTTTGCCCAATGGTTGCGAGAACGAGCTCACCACTACTAATGGGGACATGTTCACTAAGCTGTTCATGGCCGCCATGAAGCTCCAAGACCCTCTCAGGAAGCTTCTGTCCGAGACAAAACCAAAACCAGATTGTCTAGTCTCGGACAGGCTCTATCCTTGGACTGCAAATGTCACAGATGGTCTTGGAATCCCAAGGATTGTGTTCGATGGGAGTGGTTGCTTCTCTCACTGTGTTGAAGAAAGTCTTAGAGTCTATGCACCCCATGAGAGAGTTGTGTCTGAGACGGAGGCTTTTGTTGTCCCAGGACTGCCCAACAAGATTGAGCTAAAAAGGTCAATGCTGCCAGACTATGTCAAATCTCAAAATGTGTTCTCTCATTTTCTCAATGAAGCCCTAGAAGGTGAGATTAATAGCGATGGGGTTGTGGTCAATAGCTTCTATGAGTTGGAGCAAGCTTATGCTGATTTTTTCCAGAAGGAGATGAAGAGGAAAACATGGCACGTAGGACCAGTCTCCTTGAACAACAGAAGCATCATTGACAAGGTTGAGAGAGGGATCAAAACCTCCATTGATGAGTACAGTTGTTTGAGTTGGCTTGACTCCAGAGAACCCAACTCTGTTCTTTACATTAGCTTTGGAAGCATGCCAAGGATCACTTCAGCACAGCTCTTGGAGATTGCTCATGGGCTTGAGGCTTCAGATCACCCTTTCATTTGGGTGATTGGGAGGATTTTGGATTACTCATCAAAAGACAAACAACAAGTAGAGATGGCTTTGCTTCCTGTGGGATTTGAGGAGAGGATTTCGAAATCCCAAAGAGGGCTTATAATCCGAGGCTGGGCGCCTCAGCTTTTGATACTTGAACACCCAGCTGTGGGAGGCTATATGAACCACTGTGGGTGGAACTCCATCATTGAAGGTGTCACTGCTGGTGTGCCCATGATCACTTGGCCTTTCTCCTCTGAGCAGTTCTATAATGAGAGGTTCATCCTCAACATCATCAAGGTTGGGGTTTCAATGGGAAATGAACACTGGGTTCCATTGAAGGAGCTGCCTAGAGTGACCATAAAGAGCGACAAGGTAGCAAGTGTTGTGAACAGACTAATGGGCAGTGAAGAAACTGAAGTGGTTCAAATGAGAAAGACAGCAGCAGAGTTTAGAGACAAGGCCATGCAAGCTTTTCAAGAAGGTGGTTCTTCTTACAACAATGTTGATGCTTTCATCCAAGAGCTCAAGTCTCGCCGGAAAGTTCAGAACGGTCATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

502

Amino Acids

56.55

Weight (kDa)

5.88

Isoelectric Point (pI)

37.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 282 - 407 1.8e-15 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1064
AccB1I GGYRCC 1 cut(s) 1078
AciI CCGC 1 cut(s) 306
AclWI GGATC 3 cut(s) 64, 800, 896
AcoI YGGCCR 2 cut(s) 87, 303
AcuI CTGAAG 3 cut(s) 879, 918, 1380
AcyI GRCGYC 1 cut(s) 1079
AfaI GTAC 1 cut(s) 815
AfiI CCNNNNNNNGG 5 cut(s) 226, 1056, 1075, 1111, 1112
AflIII ACRYGT 1 cut(s) 282
AgsI TTSAA 9 cut(s) 32, 473, 757, 1100, 1154, 1254, 1282, 1370, 1421
AjnI CCWGG 2 cut(s) 89, 538
AjuI GAANNNNNNNTTGG 2 cut(s) 877, 909
Alw21I GWGCWC 2 cut(s) 264, 1470
Alw26I GTCTC 7 cut(s) 168, 341, 379, 512, 754, 1392, 1479
AlwI GGATC 3 cut(s) 64, 800, 896
AoxI GGCC 5 cut(s) 87, 187, 303, 1187, 1404
ApeKI GCWGC 3 cut(s) 577, 1288, 1385
AseI ATTAAT 1 cut(s) 645
Asp700I GAANNNNTTC 1 cut(s) 1365
AspLEI GCGC 1 cut(s) 1081
AspS9I GGNCC 1 cut(s) 743
AsuC2I CCSGG 1 cut(s) 221
AsuHPI GGTGA 4 cut(s) 256, 650, 932, 967
AsuII TTCGAA 1 cut(s) 1043
AvaII GGWCC 1 cut(s) 743
BaeGI GKGCMC 1 cut(s) 1176
BalI TGGCCA 1 cut(s) 89
BanI GGYRCC 1 cut(s) 1078
BanII GRGCYC 2 cut(s) 264, 1470
Bbv12I GWGCWC 2 cut(s) 264, 1470
BbvCI CCTCAGC 1 cut(s) 1083
BbvI GCAGC 3 cut(s) 564, 1275, 1397
BccI CCATC 8 cut(s) 27, 173, 203, 407, 437, 647, 1000, 1154
BciT130I CCWGG 2 cut(s) 91, 540
BclI TGATCA 1 cut(s) 1179
BcnI CCSGG 1 cut(s) 221
BcoDI GTCTC 7 cut(s) 168, 341, 379, 512, 754, 1392, 1479
BfaI CTAG 3 cut(s) 371, 632, 1293
BfoI RGCGCY 1 cut(s) 1082
BisI GCNGC 4 cut(s) 306, 578, 1289, 1386
BlsI GCNGC 4 cut(s) 307, 579, 1290, 1387
Bme1390I CCNGG 3 cut(s) 91, 221, 540
Bme18I GGWCC 1 cut(s) 743
BmgT120I GGNCC 1 cut(s) 743
BmiI GGNNCC 2 cut(s) 1080, 1275
BmrFI CCNGG 3 cut(s) 91, 221, 540
BmrI ACTGGG 1 cut(s) 1279
BmsI GCATC 2 cut(s) 777, 1441
BmuI ACTGGG 1 cut(s) 1279
BpmI CTGGAG 1 cut(s) 823
Bpu10I CCTNAGC 1 cut(s) 1083
Bpu14I TTCGAA 1 cut(s) 1043
BpuEI CTTGAG 2 cut(s) 947, 1454
BpuMI CCSGG 1 cut(s) 221
BsaAI YACGTR 1 cut(s) 739
BsaHI GRCGYC 1 cut(s) 1079
BsaI GGTCTC 1 cut(s) 168
BsaJI CCNNGG 5 cut(s) 392, 428, 538, 884, 1069
Bsc4I CCNNNNNNNGG 5 cut(s) 226, 1056, 1075, 1111, 1112
Bse1I ACTGG 2 cut(s) 746, 1274
BseBI CCWGG 2 cut(s) 91, 540
BseDI CCNNGG 5 cut(s) 392, 428, 538, 884, 1069
BseGI GGATG 4 cut(s) 19, 165, 1224, 1458
BseLI CCNNNNNNNGG 5 cut(s) 226, 1056, 1075, 1111, 1112
BseMII CTCAG 5 cut(s) 184, 343, 507, 1097, 1191
BseNI ACTGG 2 cut(s) 746, 1274
BseRI GAGGAG 4 cut(s) 140, 242, 1046, 1186
BseSI GKGCMC 1 cut(s) 1176
BseXI GCAGC 3 cut(s) 564, 1275, 1397
BseYI CCCAGC 2 cut(s) 1074, 1105
BshFI GGCC 5 cut(s) 89, 189, 305, 1189, 1406
BshNI GGYRCC 1 cut(s) 1078
BsiHKAI GWGCWC 2 cut(s) 264, 1470
BsiSI CCGG 2 cut(s) 221, 1480
BslFI GGGAC 2 cut(s) 293, 521
BslI CCNNNNNNNGG 5 cut(s) 226, 1056, 1075, 1111, 1112
BsmAI GTCTC 7 cut(s) 168, 341, 379, 512, 754, 1392, 1479
BsmBI CGTCTC 1 cut(s) 512
BsmFI GGGAC 2 cut(s) 293, 521
BsnI GGCC 5 cut(s) 89, 189, 305, 1189, 1406
Bso31I GGTCTC 1 cut(s) 168
Bsp119I TTCGAA 1 cut(s) 1043
Bsp1286I GDGCHC 3 cut(s) 264, 1176, 1470
Bsp143I GATC 5 cut(s) 69, 792, 888, 937, 1179
BspACI CCGC 1 cut(s) 306
BspANI GGCC 5 cut(s) 89, 189, 305, 1189, 1406
BspCNI CTCAG 5 cut(s) 183, 342, 508, 1096, 1192
BspLI GGNNCC 2 cut(s) 1080, 1275
BspPI GGATC 3 cut(s) 64, 800, 896
BspT104I TTCGAA 1 cut(s) 1043
BspT107I GGYRCC 1 cut(s) 1078
BspTNI GGTCTC 1 cut(s) 168
BsrI ACTGG 2 cut(s) 746, 1274
BssECI CCNNGG 5 cut(s) 392, 428, 538, 884, 1069
BssMI GATC 5 cut(s) 69, 792, 888, 937, 1179
BssNI GRCGYC 1 cut(s) 1079
BssT1I CCWWGG 3 cut(s) 392, 428, 884
Bst2UI CCWGG 2 cut(s) 91, 540
Bst4CI ACNGT 4 cut(s) 467, 818, 1133, 1496
Bst6I CTCTTC 2 cut(s) 158, 716
BstACI GRCGYC 1 cut(s) 1079
BstBAI YACGTR 1 cut(s) 739
BstBI TTCGAA 1 cut(s) 1043
BstC8I GCNNGC 3 cut(s) 690, 881, 1413
BstDEI CTNAG 7 cut(s) 170, 291, 329, 482, 516, 1083, 1200
BstF5I GGATG 4 cut(s) 19, 165, 1224, 1458
BstH2I RGCGCY 1 cut(s) 1082
BstHHI GCGC 1 cut(s) 1081
BstKTI GATC 5 cut(s) 72, 795, 891, 940, 1182
BstMAI GTCTC 7 cut(s) 168, 341, 379, 512, 754, 1392, 1479
BstMBI GATC 5 cut(s) 69, 792, 888, 937, 1179
BstMWI GCNNNNNNNGC 2 cut(s) 876, 1412
BstNI CCWGG 2 cut(s) 91, 540
BstNSI RCATGY 2 cut(s) 286, 883
BstSCI CCNGG 3 cut(s) 89, 219, 538
BstSLI GKGCMC 1 cut(s) 1176
BstV1I GCAGC 3 cut(s) 564, 1275, 1397
BsuRI GGCC 5 cut(s) 89, 189, 305, 1189, 1406
BtgZI GCGATG 1 cut(s) 666
BtsCI GGATG 4 cut(s) 19, 165, 1224, 1458
BtsI GCAGTG 2 cut(s) 1161, 1354
BtsIMutI CAGTG 5 cut(s) 463, 1129, 1161, 1267, 1354
Cac8I GCNNGC 3 cut(s) 690, 881, 1413
CfoI GCGC 1 cut(s) 1081
Cfr13I GGNCC 1 cut(s) 743
Csp6I GTAC 1 cut(s) 814
CviQI GTAC 1 cut(s) 814
DdeI CTNAG 7 cut(s) 170, 291, 329, 482, 516, 1083, 1200
DinI GGCGCC 1 cut(s) 1080
DpnI GATC 5 cut(s) 71, 794, 890, 939, 1181
DpnII GATC 5 cut(s) 69, 792, 888, 937, 1179
EaeI YGGCCR 2 cut(s) 87, 303
Eam1104I CTCTTC 2 cut(s) 158, 716
EarI CTCTTC 2 cut(s) 158, 716
Ecl136II GAGCTC 2 cut(s) 262, 1468
Eco130I CCWWGG 3 cut(s) 392, 428, 884
Eco24I GRGCYC 2 cut(s) 264, 1470
Eco31I GGTCTC 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 743
Eco53kI GAGCTC 2 cut(s) 262, 1468
Eco57I CTGAAG 3 cut(s) 879, 918, 1380
EcoICRI GAGCTC 2 cut(s) 262, 1468
EcoRII CCWGG 2 cut(s) 89, 538
EcoT14I CCWWGG 3 cut(s) 392, 428, 884
EcoT38I GRGCYC 2 cut(s) 264, 1470
EgeI GGCGCC 1 cut(s) 1080
EheI GGCGCC 1 cut(s) 1080
ErhI CCWWGG 3 cut(s) 392, 428, 884
Esp3I CGTCTC 1 cut(s) 512
FalI AAGNNNNNCTT 4 cut(s) 465, 497, 877, 909
FaqI GGGAC 2 cut(s) 293, 521
FbaI TGATCA 1 cut(s) 1179
Fnu4HI GCNGC 4 cut(s) 306, 578, 1289, 1386
FokI GGATG 4 cut(s) 6, 152, 1211, 1445
FriOI GRGCYC 2 cut(s) 264, 1470
Fsp4HI GCNGC 4 cut(s) 306, 578, 1289, 1386
FspBI CTAG 3 cut(s) 371, 632, 1293
GlaI GCGC 1 cut(s) 1080
GluI GCNGC 4 cut(s) 306, 578, 1289, 1386
GsaI CCCAGC 2 cut(s) 1078, 1109
GsuI CTGGAG 1 cut(s) 823
HaeII RGCGCY 1 cut(s) 1082
HaeIII GGCC 5 cut(s) 89, 189, 305, 1189, 1406
HapII CCGG 2 cut(s) 221, 1480
HhaI GCGC 1 cut(s) 1081
Hin1I GRCGYC 1 cut(s) 1079
Hin6I GCGC 1 cut(s) 1079
HinP1I GCGC 1 cut(s) 1079
HindIII AAGCTT 3 cut(s) 335, 690, 1413
HinfI GANTC 4 cut(s) 5, 423, 486, 836
HpaII CCGG 2 cut(s) 221, 1480
HphI GGTGA 4 cut(s) 256, 650, 932, 967
Hpy166II GTNNAC 2 cut(s) 288, 1333
Hpy188I TCNGA 8 cut(s) 173, 346, 379, 517, 937, 1070, 1201, 1491
Hpy188III TCNNGA 4 cut(s) 331, 709, 840, 1421
Hpy8I GTNNAC 2 cut(s) 288, 1333
HpyAV CCTTC 5 cut(s) 629, 706, 1148, 1276, 1418
HpyCH4III ACNGT 4 cut(s) 467, 818, 1133, 1496
HpyCH4IV ACGT 1 cut(s) 738
HpyCH4V TGCA 3 cut(s) 401, 494, 1411
HpyF10VI GCNNNNNNNGC 2 cut(s) 876, 1412
HpyF3I CTNAG 7 cut(s) 170, 291, 329, 482, 516, 1083, 1200
HpySE526I ACGT 1 cut(s) 738
Hsp92I GRCGYC 1 cut(s) 1079
HspAI GCGC 1 cut(s) 1079
KasI GGCGCC 1 cut(s) 1078
Ksp22I TGATCA 1 cut(s) 1179
Kzo9I GATC 5 cut(s) 69, 792, 888, 937, 1179
LmnI GCTCC 3 cut(s) 321, 685, 1285
Lsp1109I GCAGC 3 cut(s) 564, 1275, 1397
LweI GCATC 2 cut(s) 777, 1441
MaeI CTAG 3 cut(s) 371, 632, 1293
MaeII ACGT 1 cut(s) 738
MaeIII GTNAC 6 cut(s) 62, 127, 205, 406, 1159, 1297
MalI GATC 5 cut(s) 71, 794, 890, 939, 1181
MboI GATC 5 cut(s) 69, 792, 888, 937, 1179
MboII GAAGA 7 cut(s) 31, 34, 145, 485, 733, 1364, 1425
MhlI GDGCHC 3 cut(s) 264, 1176, 1470
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 2 cut(s) 182, 214
MluNI TGGCCA 1 cut(s) 89
Mly113I GGCGCC 1 cut(s) 1079
MlyI GAGTC 2 cut(s) 495, 830
MmeI TCCRAC 1 cut(s) 663
Mox20I TGGCCA 1 cut(s) 89
MroXI GAANNNNTTC 1 cut(s) 1365
MscI TGGCCA 1 cut(s) 89
MseI TTAA 2 cut(s) 213, 645
MslI CAYNNNNRTG 1 cut(s) 953
Msp20I TGGCCA 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 1109
MspI CCGG 2 cut(s) 221, 1480
MspR9I CCNGG 3 cut(s) 91, 221, 540
MvaI CCWGG 2 cut(s) 91, 540
MwoI GCNNNNNNNGC 2 cut(s) 876, 1412
NarI GGCGCC 1 cut(s) 1079
NciI CCSGG 1 cut(s) 221
NdeII GATC 5 cut(s) 69, 792, 888, 937, 1179
NlaIV GGNNCC 2 cut(s) 1080, 1275
NmuCI GTSAC 6 cut(s) 62, 127, 205, 406, 1159, 1297
NspI RCATGY 2 cut(s) 286, 883
NspV TTCGAA 1 cut(s) 1043
PaeI GCATGC 1 cut(s) 883
PciI ACATGT 1 cut(s) 282
PdmI GAANNNNTTC 1 cut(s) 1365
PfeI GAWTC 2 cut(s) 5, 423
PflFI GACNNNGTC 1 cut(s) 587
PkrI GCNGC 4 cut(s) 307, 579, 1290, 1387
PleI GAGTC 2 cut(s) 494, 830
PluTI GGCGCC 1 cut(s) 1082
PpsI GAGTC 2 cut(s) 494, 830
Ppu21I YACGTR 1 cut(s) 739
PscI ACATGT 1 cut(s) 282
PshBI ATTAAT 1 cut(s) 645
PsiI TTATAA 1 cut(s) 1064
Psp124BI GAGCTC 2 cut(s) 264, 1470
Psp6I CCWGG 2 cut(s) 89, 538
PspFI CCCAGC 2 cut(s) 1074, 1105
PspGI CCWGG 2 cut(s) 89, 538
PspN4I GGNNCC 2 cut(s) 1080, 1275
PspPI GGNCC 1 cut(s) 743
PsyI GACNNNGTC 1 cut(s) 587
PvuII CAGCTG 1 cut(s) 1109
RsaI GTAC 1 cut(s) 815
RsaNI GTAC 1 cut(s) 814
RseI CAYNNNNRTG 1 cut(s) 953
SacI GAGCTC 2 cut(s) 264, 1470
SaqAI TTAA 2 cut(s) 213, 645
SatI GCNGC 4 cut(s) 306, 578, 1289, 1386
Sau3AI GATC 5 cut(s) 69, 792, 888, 937, 1179
Sau96I GGNCC 1 cut(s) 743
SchI GAGTC 2 cut(s) 495, 830
ScrFI CCNGG 3 cut(s) 91, 221, 540
SduI GDGCHC 3 cut(s) 264, 1176, 1470
SfaNI GCATC 2 cut(s) 777, 1441
SfoI GGCGCC 1 cut(s) 1080
SfuI TTCGAA 1 cut(s) 1043
SinI GGWCC 1 cut(s) 743
SmiMI CAYNNNNRTG 1 cut(s) 953
SmlI CTYRAG 2 cut(s) 926, 1469
SmoI CTYRAG 2 cut(s) 926, 1469
SphI GCATGC 1 cut(s) 883
Sse9I AATT 2 cut(s) 182, 214
SsiI CCGC 1 cut(s) 306
SspDI GGCGCC 1 cut(s) 1078
SspI AATATT 1 cut(s) 36
SspMI CTAG 3 cut(s) 371, 632, 1293
SstI GAGCTC 2 cut(s) 264, 1470
StyD4I CCNGG 3 cut(s) 89, 219, 538
StyI CCWWGG 3 cut(s) 392, 428, 884
TaaI ACNGT 4 cut(s) 467, 818, 1133, 1496
TaiI ACGT 1 cut(s) 741
TaqI TCGA 2 cut(s) 441, 1043
TasI AATT 2 cut(s) 182, 214
TatI WGTACW 1 cut(s) 813
TauI GCSGC 1 cut(s) 308
TfiI GAWTC 2 cut(s) 5, 423
Tru1I TTAA 2 cut(s) 213, 645
Tru9I TTAA 2 cut(s) 213, 645
TscAI CASTG 5 cut(s) 470, 1136, 1168, 1274, 1354
TseFI GTSAC 6 cut(s) 62, 127, 205, 406, 1159, 1297
TseI GCWGC 3 cut(s) 577, 1288, 1385
Tsp45I GTSAC 6 cut(s) 62, 127, 205, 406, 1159, 1297
TspGWI ACGGA 1 cut(s) 536
TspRI CASTG 5 cut(s) 470, 1136, 1168, 1274, 1354
Tth111I GACNNNGTC 1 cut(s) 587
VpaK11BI GGWCC 1 cut(s) 743
VspI ATTAAT 1 cut(s) 645
XceI RCATGY 2 cut(s) 286, 883
XcmI CCANNNNNNNNNTGG 1 cut(s) 82
XmnI GAANNNNTTC 1 cut(s) 1365
XspI CTAG 3 cut(s) 371, 632, 1293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.