Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003012.1

Orthogroup ID

OG0007482

Physical Location & Seq

Genomic Coordinates Forward (+)

70261 .. 71760

Gene Structure 1500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003012.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1500 bp

atggattcacaagctgaccatcccaaacttgaaatattcttcttcccatacattctcggtggtcacttgatccccatgatagatttggccaggctctttgcatctcatggagtgaaagcctccattgtcacaacccctcacaatgtcctcctcttccgaaatgcaatcctcagagaccaagaattaggccatgacatcggcttcgtcacacttaatttcccggcagaggagttcggtttacccaatggttgcgagaacgagctcgccactactaatggggacatgttcattaagctgttcctggctgccatgaagctccaagatcctctgaggaagcttctgtccgagacaaaaccagattgtcttgtctcggacaggctctatccttggactgcaaatgtcacagatgggcttggaatcccaaggattgtgttcgatgggagtggttgcttctctcactgtgttgaagaaagtcttagactctatgctccccatgagaaagttgtgtctgagacagagtcttttgttgtgcccggactgcccaacaagattgagctaaaaaggtcaatgctgccagactatgtcaaatctgaaaatggattcactcattttctcaatgaagccctagaaggtgagattaaaagcgatggggttgtggtcaacagcttctatgagttggaacaagcttatgctgattattttcagaaggagatgaagaggaaaacatggcacataggaccagtctccttgtacaacaaaagcaacattgacaaggttgagagagggatcaaaacctccattgatgagtatagttgtttgaattggcttgactccagagaacccaactctgttctttacattagctttggaagcatgccaaggatcacttcagcacagctcttggagattgctcatgggcttgaggcttcagatcaccctttcatttgggtgattgggaggattttaaattactcatcaaaagagaaacaacaagtagagatgggtttgcttcctgtgggatttgaggagaggatttcgaattccaaaagagggcttattatcagaggctgggctcctcagcttttgatacttgaacacccagctgtgggagcttatatgaaccactgtgggtggaactccatcattgaaggtgtcactgctggtttgcctatgatcacttggcctttctcctctgagcagttctacaatgagaggttcatcgtcaacatcatcaaagttgggatttcaatgggaaatgagcactgggttccactgaaggagctgcctagagtgaccataaagagcgacaaggtagcaagtgttgtgaacagactgatgggcagggaagaagctgaagtggttgaaatgagaaagacagcagcagagtttagagacaaagccatgcaagcttttcaagaaggtggttcttcttacaacaatgttgatgcttttatcgaggagctcaagtctcgccgtaaagttcaaaacggtcatctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

499

Amino Acids

56.4

Weight (kDa)

5.74

Isoelectric Point (pI)

37.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007482)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05690 FvH4_2g05700
malus_domestica	MD05G1085400.v1.1 MD05G1085600.v1.1
prunus_persica	Prupe.8G129600_v2.0.a1 Prupe.8G129700_v2.0.a1
pyrus_communis	pycom05g08480 pycom05g08490
rosa_chinensis	RchiOBHm_Chr5g0039721 RchiOBHm_Chr6g0256571
rosa_laevigata	RLG00000014758 RLG00000014761
rosa_multiflora	Rmu_sc0000103.1_g000010 Rmu_sc0003012.1_g000017 Rmu_sc0003012.1_g000019 Rmu_ssc0000052.1_g000002
rosa_roxburghii	Rroxscaffold_7G00209220 Rroxscaffold_7G00209230
rosa_rugosa	Rorug05G0181400 Rorug05G0564700 Rorug05G0564700
rosa_samantha	Rh6BG074800 Rh6CG071700
rosa_wichuraiana	Rw6G007400 Rw6G007420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	64, 317, 794, 890
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	1039
AcuI	CTGAAG	4 cut(s)	873, 912, 1295, 1374
AfaI	GTAC	1 cut(s)	752
AfiI	CCNNNNNNNGG	4 cut(s)	226, 1050, 1105, 1106
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	9 cut(s)	32, 467, 820, 1094, 1148, 1248, 1364, 1415, 1484
AjnI	CCWGG	2 cut(s)	89, 300
AjuI	GAANNNNNNNTTGG	2 cut(s)	871, 903
Alw21I	GWGCWC	3 cut(s)	264, 1263, 1464
Alw26I	GTCTC	7 cut(s)	168, 341, 373, 506, 748, 1386, 1473
AlwI	GGATC	4 cut(s)	64, 317, 794, 890
AlwNI	CAGNNNCTG	1 cut(s)	1068
AoxI	GGCC	3 cut(s)	87, 187, 1181
ApeKI	GCWGC	4 cut(s)	305, 571, 1282, 1379
ApoI	RAATTY	1 cut(s)	1039
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
AspS9I	GGNCC	1 cut(s)	737
AsuC2I	CCSGG	2 cut(s)	221, 534
AsuHPI	GGTGA	3 cut(s)	644, 926, 961
AsuII	TTCGAA	1 cut(s)	1037
AvaII	GGWCC	1 cut(s)	737
BaeGI	GKGCMC	1 cut(s)	534
BalI	TGGCCA	1 cut(s)	89
BanII	GRGCYC	3 cut(s)	264, 1075, 1464
Bbv12I	GWGCWC	3 cut(s)	264, 1263, 1464
BbvCI	CCTCAGC	1 cut(s)	1077
BbvI	GCAGC	4 cut(s)	292, 558, 1269, 1391
BccI	CCATC	7 cut(s)	27, 401, 431, 641, 994, 1148, 1330
BceAI	ACGGC	1 cut(s)	1458
BciT130I	CCWGG	2 cut(s)	91, 302
BclI	TGATCA	1 cut(s)	1173
BcnI	CCSGG	2 cut(s)	221, 534
BcoDI	GTCTC	7 cut(s)	168, 341, 373, 506, 748, 1386, 1473
BfaI	CTAG	2 cut(s)	626, 1287
BisI	GCNGC	4 cut(s)	306, 572, 1283, 1380
BlsI	GCNGC	4 cut(s)	307, 573, 1284, 1381
Bme1390I	CCNGG	4 cut(s)	91, 221, 302, 534
Bme18I	GGWCC	1 cut(s)	737
BmgT120I	GGNCC	1 cut(s)	737
BmiI	GGNNCC	2 cut(s)	1074, 1269
BmrFI	CCNGG	4 cut(s)	91, 221, 302, 534
BmrI	ACTGGG	1 cut(s)	1273
BmsI	GCATC	2 cut(s)	110, 1435
BmuI	ACTGGG	1 cut(s)	1273
BpmI	CTGGAG	1 cut(s)	817
Bpu10I	CCTNAGC	1 cut(s)	1077
Bpu14I	TTCGAA	1 cut(s)	1037
BpuEI	CTTGAG	2 cut(s)	941, 1448
BpuMI	CCSGG	2 cut(s)	221, 534
BsaI	GGTCTC	1 cut(s)	168
BsaJI	CCNNGG	3 cut(s)	386, 422, 878
BsaXI	ACNNNNNCTCC	2 cut(s)	1451, 1481
Bsc4I	CCNNNNNNNGG	4 cut(s)	226, 1050, 1105, 1106
Bse1I	ACTGG	2 cut(s)	740, 1268
BseBI	CCWGG	2 cut(s)	91, 302
BseDI	CCNNGG	3 cut(s)	386, 422, 878
BseGI	GGATG	1 cut(s)	19
BseLI	CCNNNNNNNGG	4 cut(s)	226, 1050, 1105, 1106
BseMII	CTCAG	5 cut(s)	184, 320, 501, 1091, 1185
BseNI	ACTGG	2 cut(s)	740, 1268
BseRI	GAGGAG	6 cut(s)	140, 242, 1040, 1065, 1180, 1472
BseSI	GKGCMC	1 cut(s)	534
BseXI	GCAGC	4 cut(s)	292, 558, 1269, 1391
BseYI	CCCAGC	2 cut(s)	1068, 1099
BshFI	GGCC	3 cut(s)	89, 189, 1183
BsiHKAI	GWGCWC	3 cut(s)	264, 1263, 1464
BsiSI	CCGG	2 cut(s)	221, 534
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	4 cut(s)	226, 1050, 1105, 1106
BsmAI	GTCTC	7 cut(s)	168, 341, 373, 506, 748, 1386, 1473
BsmFI	GGGAC	1 cut(s)	293
BsnI	GGCC	3 cut(s)	89, 189, 1183
Bso31I	GGTCTC	1 cut(s)	168
Bsp119I	TTCGAA	1 cut(s)	1037
Bsp1286I	GDGCHC	5 cut(s)	264, 534, 1075, 1263, 1464
Bsp1407I	TGTACA	1 cut(s)	750
Bsp143I	GATC	6 cut(s)	69, 322, 786, 882, 931, 1173
BspANI	GGCC	3 cut(s)	89, 189, 1183
BspCNI	CTCAG	5 cut(s)	183, 321, 502, 1090, 1186
BspLI	GGNNCC	2 cut(s)	1074, 1269
BspPI	GGATC	4 cut(s)	64, 317, 794, 890
BspT104I	TTCGAA	1 cut(s)	1037
BspTNI	GGTCTC	1 cut(s)	168
BsrGI	TGTACA	1 cut(s)	750
BsrI	ACTGG	2 cut(s)	740, 1268
BssECI	CCNNGG	3 cut(s)	386, 422, 878
BssMI	GATC	6 cut(s)	69, 322, 786, 882, 931, 1173
BssT1I	CCWWGG	3 cut(s)	386, 422, 878
Bst2UI	CCWGG	2 cut(s)	91, 302
Bst4CI	ACNGT	3 cut(s)	461, 1127, 1490
Bst6I	CTCTTC	2 cut(s)	158, 710
BstAUI	TGTACA	1 cut(s)	750
BstBI	TTCGAA	1 cut(s)	1037
BstC8I	GCNNGC	3 cut(s)	264, 875, 1407
BstDEI	CTNAG	6 cut(s)	170, 329, 476, 510, 1077, 1194
BstF5I	GGATG	1 cut(s)	19
BstKTI	GATC	6 cut(s)	72, 325, 789, 885, 934, 1176
BstMAI	GTCTC	7 cut(s)	168, 341, 373, 506, 748, 1386, 1473
BstMBI	GATC	6 cut(s)	69, 322, 786, 882, 931, 1173
BstMWI	GCNNNNNNNGC	4 cut(s)	538, 870, 1109, 1406
BstNI	CCWGG	2 cut(s)	91, 302
BstNSI	RCATGY	2 cut(s)	286, 877
BstSCI	CCNGG	4 cut(s)	89, 219, 300, 532
BstSLI	GKGCMC	1 cut(s)	534
BstV1I	GCAGC	4 cut(s)	292, 558, 1269, 1391
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BsuRI	GGCC	3 cut(s)	89, 189, 1183
BtgZI	GCGATG	1 cut(s)	660
BtsCI	GGATG	1 cut(s)	19
BtsI	GCAGTG	1 cut(s)	1155
BtsIMutI	CAGTG	5 cut(s)	457, 1123, 1155, 1261, 1271
Cac8I	GCNNGC	3 cut(s)	264, 875, 1407
CaiI	CAGNNNCTG	1 cut(s)	1068
Cfr13I	GGNCC	1 cut(s)	737
Csp6I	GTAC	1 cut(s)	751
CviQI	GTAC	1 cut(s)	751
DdeI	CTNAG	6 cut(s)	170, 329, 476, 510, 1077, 1194
DpnI	GATC	6 cut(s)	71, 324, 788, 884, 933, 1175
DpnII	GATC	6 cut(s)	69, 322, 786, 882, 931, 1173
DraI	TTTAAA	1 cut(s)	966
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	2 cut(s)	158, 710
EarI	CTCTTC	2 cut(s)	158, 710
Ecl136II	GAGCTC	2 cut(s)	262, 1462
Eco130I	CCWWGG	3 cut(s)	386, 422, 878
Eco24I	GRGCYC	3 cut(s)	264, 1075, 1464
Eco31I	GGTCTC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	737
Eco53kI	GAGCTC	2 cut(s)	262, 1462
Eco57I	CTGAAG	4 cut(s)	873, 912, 1295, 1374
EcoICRI	GAGCTC	2 cut(s)	262, 1462
EcoRI	GAATTC	1 cut(s)	1039
EcoRII	CCWGG	2 cut(s)	89, 300
EcoT14I	CCWWGG	3 cut(s)	386, 422, 878
EcoT38I	GRGCYC	3 cut(s)	264, 1075, 1464
ErhI	CCWWGG	3 cut(s)	386, 422, 878
FalI	AAGNNNNNCTT	4 cut(s)	459, 491, 871, 903
FaqI	GGGAC	1 cut(s)	293
FbaI	TGATCA	1 cut(s)	1173
Fnu4HI	GCNGC	4 cut(s)	306, 572, 1283, 1380
FokI	GGATG	1 cut(s)	6
FriOI	GRGCYC	3 cut(s)	264, 1075, 1464
Fsp4HI	GCNGC	4 cut(s)	306, 572, 1283, 1380
FspBI	CTAG	2 cut(s)	626, 1287
GluI	GCNGC	4 cut(s)	306, 572, 1283, 1380
GsaI	CCCAGC	2 cut(s)	1072, 1103
GsuI	CTGGAG	1 cut(s)	817
HaeIII	GGCC	3 cut(s)	89, 189, 1183
HapII	CCGG	2 cut(s)	221, 534
HincII	GTYRAC	2 cut(s)	661, 1225
HindII	GTYRAC	2 cut(s)	661, 1225
HindIII	AAGCTT	3 cut(s)	335, 684, 1407
HinfI	GANTC	6 cut(s)	5, 417, 480, 518, 600, 830
HpaII	CCGG	2 cut(s)	221, 534
HphI	GGTGA	3 cut(s)	644, 926, 961
Hpy166II	GTNNAC	4 cut(s)	239, 661, 1225, 1327
Hpy188III	TCNNGA	2 cut(s)	834, 1415
Hpy8I	GTNNAC	4 cut(s)	239, 661, 1225, 1327
HpyAV	CCTTC	5 cut(s)	623, 700, 1142, 1270, 1412
HpyCH4III	ACNGT	3 cut(s)	461, 1127, 1490
HpyCH4V	TGCA	4 cut(s)	101, 164, 395, 1405
HpyF10VI	GCNNNNNNNGC	4 cut(s)	538, 870, 1109, 1406
HpyF3I	CTNAG	6 cut(s)	170, 329, 476, 510, 1077, 1194
Ksp22I	TGATCA	1 cut(s)	1173
Kzo9I	GATC	6 cut(s)	69, 322, 786, 882, 931, 1173
LmnI	GCTCC	6 cut(s)	321, 493, 1078, 1109, 1279, 1459
Lsp1109I	GCAGC	4 cut(s)	292, 558, 1269, 1391
LweI	GCATC	2 cut(s)	110, 1435
MaeI	CTAG	2 cut(s)	626, 1287
MaeIII	GTNAC	6 cut(s)	62, 127, 205, 400, 1153, 1291
MalI	GATC	6 cut(s)	71, 324, 788, 884, 933, 1175
MboI	GATC	6 cut(s)	69, 322, 786, 882, 931, 1173
MboII	GAAGA	7 cut(s)	31, 34, 145, 479, 727, 1358, 1419
MflI	RGATCY	1 cut(s)	322
MhlI	GDGCHC	5 cut(s)	264, 534, 1075, 1263, 1464
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	5 cut(s)	182, 214, 820, 967, 1039
MluNI	TGGCCA	1 cut(s)	89
MlyI	GAGTC	3 cut(s)	474, 527, 824
MmeI	TCCRAC	1 cut(s)	657
Mox20I	TGGCCA	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	89
MseI	TTAA	4 cut(s)	213, 291, 639, 965
MslI	CAYNNNNRTG	1 cut(s)	947
Msp20I	TGGCCA	1 cut(s)	89
MspA1I	CMGCKG	1 cut(s)	1103
MspI	CCGG	2 cut(s)	221, 534
MspR9I	CCNGG	4 cut(s)	91, 221, 302, 534
MvaI	CCWGG	2 cut(s)	91, 302
MwoI	GCNNNNNNNGC	4 cut(s)	538, 870, 1109, 1406
NciI	CCSGG	2 cut(s)	221, 534
NdeII	GATC	6 cut(s)	69, 322, 786, 882, 931, 1173
NlaIV	GGNNCC	2 cut(s)	1074, 1269
NmuCI	GTSAC	6 cut(s)	62, 127, 205, 400, 1153, 1291
NspI	RCATGY	2 cut(s)	286, 877
NspV	TTCGAA	1 cut(s)	1037
PaeI	GCATGC	1 cut(s)	877
PciI	ACATGT	1 cut(s)	282
PfeI	GAWTC	3 cut(s)	5, 417, 600
PflFI	GACNNNGTC	2 cut(s)	517, 581
PkrI	GCNGC	4 cut(s)	307, 573, 1284, 1381
PleI	GAGTC	3 cut(s)	474, 526, 824
PpsI	GAGTC	3 cut(s)	474, 526, 824
PscI	ACATGT	1 cut(s)	282
Psp124BI	GAGCTC	2 cut(s)	264, 1464
Psp6I	CCWGG	2 cut(s)	89, 300
PspFI	CCCAGC	2 cut(s)	1068, 1099
PspGI	CCWGG	2 cut(s)	89, 300
PspN4I	GGNNCC	2 cut(s)	1074, 1269
PspPI	GGNCC	1 cut(s)	737
PstNI	CAGNNNCTG	1 cut(s)	1068
PsuI	RGATCY	1 cut(s)	322
PsyI	GACNNNGTC	2 cut(s)	517, 581
PvuII	CAGCTG	1 cut(s)	1103
RsaI	GTAC	1 cut(s)	752
RsaNI	GTAC	1 cut(s)	751
RseI	CAYNNNNRTG	1 cut(s)	947
SacI	GAGCTC	2 cut(s)	264, 1464
SaqAI	TTAA	4 cut(s)	213, 291, 639, 965
SatI	GCNGC	4 cut(s)	306, 572, 1283, 1380
Sau3AI	GATC	6 cut(s)	69, 322, 786, 882, 931, 1173
Sau96I	GGNCC	1 cut(s)	737
SchI	GAGTC	3 cut(s)	474, 527, 824
ScrFI	CCNGG	4 cut(s)	91, 221, 302, 534
SduI	GDGCHC	5 cut(s)	264, 534, 1075, 1263, 1464
SfaNI	GCATC	2 cut(s)	110, 1435
SfuI	TTCGAA	1 cut(s)	1037
SinI	GGWCC	1 cut(s)	737
SmiMI	CAYNNNNRTG	1 cut(s)	947
SmlI	CTYRAG	2 cut(s)	920, 1463
SmoI	CTYRAG	2 cut(s)	920, 1463
SphI	GCATGC	1 cut(s)	877
Sse9I	AATT	5 cut(s)	182, 214, 820, 967, 1039
SspI	AATATT	1 cut(s)	36
SspMI	CTAG	2 cut(s)	626, 1287
SstI	GAGCTC	2 cut(s)	264, 1464
StyD4I	CCNGG	4 cut(s)	89, 219, 300, 532
StyI	CCWWGG	3 cut(s)	386, 422, 878
TaaI	ACNGT	3 cut(s)	461, 1127, 1490
TaqI	TCGA	3 cut(s)	435, 1037, 1455
TasI	AATT	5 cut(s)	182, 214, 820, 967, 1039
TatI	WGTACW	1 cut(s)	750
TfiI	GAWTC	3 cut(s)	5, 417, 600
Tru1I	TTAA	4 cut(s)	213, 291, 639, 965
Tru9I	TTAA	4 cut(s)	213, 291, 639, 965
TscAI	CASTG	5 cut(s)	464, 1130, 1162, 1268, 1278
TseFI	GTSAC	6 cut(s)	62, 127, 205, 400, 1153, 1291
TseI	GCWGC	4 cut(s)	305, 571, 1282, 1379
Tsp45I	GTSAC	6 cut(s)	62, 127, 205, 400, 1153, 1291
TspDTI	ATGAA	7 cut(s)	277, 326, 633, 728, 931, 1133, 1207
TspRI	CASTG	5 cut(s)	464, 1130, 1162, 1268, 1278
Tth111I	GACNNNGTC	2 cut(s)	517, 581
VpaK11BI	GGWCC	1 cut(s)	737
XapI	RAATTY	1 cut(s)	1039
XceI	RCATGY	2 cut(s)	286, 877
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82
XspI	CTAG	2 cut(s)	626, 1287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.