Rroxscaffold_7G00209220

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0007482
Physical Location & Seq
Forward (+)
59515969 .. 59517468
1500 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00209220.1

Sequence Viewer

Length: 1500 bp
ATGGATTCACAAGCTGACCATCCCAAACTTGAAATATTCTTCTTCCCATACATTCTCGGTGGTCACTTGATCCCCATGATAGATTTGGCCAGGCTCTTTGCATCTCATGGAGTGAAAGCCTCCATTGTCACAACCCCTCACAATGTCCTCCTCTTCCGAAATGCAATCCTCAGAGACCAAGAATTAGGCCATGACATCGGCTTCGTCACACTTAATTTCCCGGCAGAGGAGTTCGGTTTACCCAATGGATGCGAGAACGAGCTCGCCACTACTAATGGGGACATGTTCATTAAGCTGTTCCTGGCTGCCATGAAGCTCCAAGACCCTCTGAGGAAGCTTCTGTCCGAGACAAAACCAGATTGTCTTGTCTCTGACAGGCTCTATCCTTGGACTGCAAATGTCACAGATGGGCTTGGAATCCCAAGGATTGTGTTCGATGGAAGTGGTTGCTTCTCTCACTGTGTTGAAGAAAGTCTTAGACTCTATGCTCCCCATGAGAAAGTTGTGTCTGAGACAGAGTCTTTTGTTGTGCCCGGACTGCCCAACAAGATTGAGCTAAAAAGGTCAATGCTGCCAGACTATGTCAAATCTGAAAATGGATTCACTAATTTTCTCAATGAAGCCCTAGAAGGTGAGATTAAAAGCGATGGGGTTGTGGTCAATAGCTTCTATGAGTTGGAACAAGCTTATGCTGATTATTTTCAGAATGAGATGAAGAGGAAAACATGGCACGTAGGACCAGTCTCCTTGTACAACAAAAGCAACATTGACAAGGTTGAGAGAGGGATCAAAACCTCCATTGATGAGTATAGTTGTTTGAATTGGCTTGACTCCAGAGAACCCAACTCTGTTCTTTACATTAGCTTTGGAAGCATGCCAAGGATCACTTCAGCACAGCTCTTGGAGATTGCTCATGGGCTTGAAGCTTCAGATCACCCTTTCATTTGGGTGATCGGGAGGATTTTGAATTACTCATCAAAAGAGAAACAACAAGTAGAGATGGGTTTGCTTCCTGTGGGATTTGAGGAGAGGATTTCGAATTCCAAAAGAGGGCTTATTATCAGAGGCTGGGCTCCTCAGCTTTTGATACTTGAACACCCAGCTGTGGGAGCTTATATGAACCACTGTGGGTGGAACTCCATCATTGAAGGTGTCACTGCTGGTGTGCCTATGATCACTTGGCCTTTCTCCTCTGAGCAGTTCTACAATGAGAGGTTCATCGTCAACATCATCAAAGTTGGGATTTCAATGGGAAATGAGCACTGGGTTCCACTGAAGGAGCTGCCTAGAGTGACCATAAAGAGCGACAAGGTAGCAAGTGTTGTGAACAGACTGATGGGCAGGGAAGAAGCTGAAGTGGTTGAAATGAGAAAGACAGCAGCAGAGTTTAGAGACAAAGCCATGCAAGCTTTTCAAGAAGGTGGTTCTTCTTACAACAATGTTGATGCTTTCATCGAGGAGCTCAAGTCTCGCCGTAAAGTTCAAAACGGTCATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

499

Amino Acids

56.33

Weight (kDa)

5.62

Isoelectric Point (pI)

36.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 280 - 406 1e-16 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 64, 794, 890
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 1 cut(s) 1039
AcuI CTGAAG 4 cut(s) 873, 912, 1295, 1374
AfaI GTAC 1 cut(s) 752
AfiI CCNNNNNNNGG 4 cut(s) 226, 1050, 1105, 1106
AflIII ACRYGT 1 cut(s) 282
AjnI CCWGG 2 cut(s) 89, 300
AjuI GAANNNNNNNTTGG 2 cut(s) 871, 903
Alw21I GWGCWC 3 cut(s) 264, 1263, 1464
Alw26I GTCTC 7 cut(s) 168, 341, 373, 506, 748, 1386, 1473
AlwI GGATC 3 cut(s) 64, 794, 890
AlwNI CAGNNNCTG 1 cut(s) 1068
AoxI GGCC 3 cut(s) 87, 187, 1181
ApeKI GCWGC 4 cut(s) 305, 571, 1282, 1379
ApoI RAATTY 1 cut(s) 1039
ArsI GACNNNNNNTTYG 2 cut(s) 185, 217
AspS9I GGNCC 1 cut(s) 737
AsuC2I CCSGG 2 cut(s) 221, 534
AsuHPI GGTGA 3 cut(s) 644, 926, 961
AsuII TTCGAA 1 cut(s) 1037
AvaII GGWCC 1 cut(s) 737
BaeGI GKGCMC 1 cut(s) 534
BalI TGGCCA 1 cut(s) 89
BanII GRGCYC 3 cut(s) 264, 1075, 1464
Bbv12I GWGCWC 3 cut(s) 264, 1263, 1464
BbvCI CCTCAGC 1 cut(s) 1077
BbvI GCAGC 4 cut(s) 292, 558, 1269, 1391
BccI CCATC 7 cut(s) 27, 401, 431, 641, 994, 1148, 1330
BceAI ACGGC 1 cut(s) 1458
BciT130I CCWGG 2 cut(s) 91, 302
BclI TGATCA 1 cut(s) 1173
BcnI CCSGG 2 cut(s) 221, 534
BcoDI GTCTC 7 cut(s) 168, 341, 373, 506, 748, 1386, 1473
BfaI CTAG 2 cut(s) 626, 1287
BisI GCNGC 4 cut(s) 306, 572, 1283, 1380
BlsI GCNGC 4 cut(s) 307, 573, 1284, 1381
Bme1390I CCNGG 4 cut(s) 91, 221, 302, 534
Bme18I GGWCC 1 cut(s) 737
BmgT120I GGNCC 1 cut(s) 737
BmiI GGNNCC 2 cut(s) 1074, 1269
BmrFI CCNGG 4 cut(s) 91, 221, 302, 534
BmrI ACTGGG 1 cut(s) 1273
BmsI GCATC 3 cut(s) 110, 239, 1435
BmuI ACTGGG 1 cut(s) 1273
BpmI CTGGAG 1 cut(s) 817
Bpu10I CCTNAGC 1 cut(s) 1077
Bpu14I TTCGAA 1 cut(s) 1037
BpuEI CTTGAG 1 cut(s) 1448
BpuMI CCSGG 2 cut(s) 221, 534
BsaAI YACGTR 1 cut(s) 733
BsaI GGTCTC 1 cut(s) 168
BsaJI CCNNGG 3 cut(s) 386, 422, 878
BsaXI ACNNNNNCTCC 2 cut(s) 1451, 1481
Bsc4I CCNNNNNNNGG 4 cut(s) 226, 1050, 1105, 1106
Bse1I ACTGG 2 cut(s) 740, 1268
BseBI CCWGG 2 cut(s) 91, 302
BseDI CCNNGG 3 cut(s) 386, 422, 878
BseGI GGATG 2 cut(s) 19, 254
BseLI CCNNNNNNNGG 4 cut(s) 226, 1050, 1105, 1106
BseMII CTCAG 5 cut(s) 184, 320, 501, 1091, 1185
BseNI ACTGG 2 cut(s) 740, 1268
BseRI GAGGAG 6 cut(s) 140, 242, 1040, 1065, 1180, 1472
BseSI GKGCMC 1 cut(s) 534
BseXI GCAGC 4 cut(s) 292, 558, 1269, 1391
BseYI CCCAGC 2 cut(s) 1068, 1099
BshFI GGCC 3 cut(s) 89, 189, 1183
BsiHKAI GWGCWC 3 cut(s) 264, 1263, 1464
BsiSI CCGG 2 cut(s) 221, 534
BslFI GGGAC 1 cut(s) 293
BslI CCNNNNNNNGG 4 cut(s) 226, 1050, 1105, 1106
BsmAI GTCTC 7 cut(s) 168, 341, 373, 506, 748, 1386, 1473
BsmFI GGGAC 1 cut(s) 293
BsnI GGCC 3 cut(s) 89, 189, 1183
Bso31I GGTCTC 1 cut(s) 168
Bsp119I TTCGAA 1 cut(s) 1037
Bsp1286I GDGCHC 5 cut(s) 264, 534, 1075, 1263, 1464
Bsp1407I TGTACA 1 cut(s) 750
Bsp143I GATC 6 cut(s) 69, 786, 882, 931, 951, 1173
BspANI GGCC 3 cut(s) 89, 189, 1183
BspCNI CTCAG 5 cut(s) 183, 321, 502, 1090, 1186
BspLI GGNNCC 2 cut(s) 1074, 1269
BspPI GGATC 3 cut(s) 64, 794, 890
BspT104I TTCGAA 1 cut(s) 1037
BspTNI GGTCTC 1 cut(s) 168
BsrGI TGTACA 1 cut(s) 750
BsrI ACTGG 2 cut(s) 740, 1268
BssECI CCNNGG 3 cut(s) 386, 422, 878
BssMI GATC 6 cut(s) 69, 786, 882, 931, 951, 1173
BssT1I CCWWGG 3 cut(s) 386, 422, 878
Bst2UI CCWGG 2 cut(s) 91, 302
Bst4CI ACNGT 3 cut(s) 461, 1127, 1490
Bst6I CTCTTC 2 cut(s) 158, 710
BstAUI TGTACA 1 cut(s) 750
BstBAI YACGTR 1 cut(s) 733
BstBI TTCGAA 1 cut(s) 1037
BstC8I GCNNGC 3 cut(s) 264, 875, 1407
BstDEI CTNAG 6 cut(s) 170, 329, 476, 510, 1077, 1194
BstF5I GGATG 2 cut(s) 19, 254
BstKTI GATC 6 cut(s) 72, 789, 885, 934, 954, 1176
BstMAI GTCTC 7 cut(s) 168, 341, 373, 506, 748, 1386, 1473
BstMBI GATC 6 cut(s) 69, 786, 882, 931, 951, 1173
BstMWI GCNNNNNNNGC 4 cut(s) 538, 870, 1109, 1406
BstNI CCWGG 2 cut(s) 91, 302
BstNSI RCATGY 2 cut(s) 286, 877
BstSCI CCNGG 4 cut(s) 89, 219, 300, 532
BstSLI GKGCMC 1 cut(s) 534
BstV1I GCAGC 4 cut(s) 292, 558, 1269, 1391
BsuRI GGCC 3 cut(s) 89, 189, 1183
BtgZI GCGATG 1 cut(s) 660
BtsCI GGATG 2 cut(s) 19, 254
BtsI GCAGTG 1 cut(s) 1155
BtsIMutI CAGTG 5 cut(s) 457, 1123, 1155, 1261, 1271
Cac8I GCNNGC 3 cut(s) 264, 875, 1407
CaiI CAGNNNCTG 1 cut(s) 1068
Cfr13I GGNCC 1 cut(s) 737
Csp6I GTAC 1 cut(s) 751
CviQI GTAC 1 cut(s) 751
DdeI CTNAG 6 cut(s) 170, 329, 476, 510, 1077, 1194
DpnI GATC 6 cut(s) 71, 788, 884, 933, 953, 1175
DpnII GATC 6 cut(s) 69, 786, 882, 931, 951, 1173
EaeI YGGCCR 1 cut(s) 87
Eam1104I CTCTTC 2 cut(s) 158, 710
EarI CTCTTC 2 cut(s) 158, 710
Ecl136II GAGCTC 2 cut(s) 262, 1462
Eco130I CCWWGG 3 cut(s) 386, 422, 878
Eco24I GRGCYC 3 cut(s) 264, 1075, 1464
Eco31I GGTCTC 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 737
Eco53kI GAGCTC 2 cut(s) 262, 1462
Eco57I CTGAAG 4 cut(s) 873, 912, 1295, 1374
EcoICRI GAGCTC 2 cut(s) 262, 1462
EcoRI GAATTC 1 cut(s) 1039
EcoRII CCWGG 2 cut(s) 89, 300
EcoT14I CCWWGG 3 cut(s) 386, 422, 878
EcoT38I GRGCYC 3 cut(s) 264, 1075, 1464
ErhI CCWWGG 3 cut(s) 386, 422, 878
FalI AAGNNNNNCTT 4 cut(s) 459, 491, 871, 903
FaqI GGGAC 1 cut(s) 293
FbaI TGATCA 1 cut(s) 1173
Fnu4HI GCNGC 4 cut(s) 306, 572, 1283, 1380
FokI GGATG 2 cut(s) 6, 261
FriOI GRGCYC 3 cut(s) 264, 1075, 1464
Fsp4HI GCNGC 4 cut(s) 306, 572, 1283, 1380
FspBI CTAG 2 cut(s) 626, 1287
GluI GCNGC 4 cut(s) 306, 572, 1283, 1380
GsaI CCCAGC 2 cut(s) 1072, 1103
GsuI CTGGAG 1 cut(s) 817
HaeIII GGCC 3 cut(s) 89, 189, 1183
HapII CCGG 2 cut(s) 221, 534
HincII GTYRAC 1 cut(s) 1225
HindII GTYRAC 1 cut(s) 1225
HindIII AAGCTT 4 cut(s) 335, 684, 924, 1407
HinfI GANTC 6 cut(s) 5, 417, 480, 518, 600, 830
HpaII CCGG 2 cut(s) 221, 534
HphI GGTGA 3 cut(s) 644, 926, 961
Hpy166II GTNNAC 3 cut(s) 239, 1225, 1327
Hpy188III TCNNGA 3 cut(s) 834, 955, 1415
Hpy8I GTNNAC 3 cut(s) 239, 1225, 1327
HpyAV CCTTC 4 cut(s) 623, 1142, 1270, 1412
HpyCH4III ACNGT 3 cut(s) 461, 1127, 1490
HpyCH4IV ACGT 1 cut(s) 732
HpyCH4V TGCA 4 cut(s) 101, 164, 395, 1405
HpyF10VI GCNNNNNNNGC 4 cut(s) 538, 870, 1109, 1406
HpyF3I CTNAG 6 cut(s) 170, 329, 476, 510, 1077, 1194
HpySE526I ACGT 1 cut(s) 732
Ksp22I TGATCA 1 cut(s) 1173
Kzo9I GATC 6 cut(s) 69, 786, 882, 931, 951, 1173
LmnI GCTCC 6 cut(s) 321, 493, 1078, 1109, 1279, 1459
Lsp1109I GCAGC 4 cut(s) 292, 558, 1269, 1391
LweI GCATC 3 cut(s) 110, 239, 1435
MaeI CTAG 2 cut(s) 626, 1287
MaeII ACGT 1 cut(s) 732
MaeIII GTNAC 6 cut(s) 62, 127, 205, 400, 1153, 1291
MalI GATC 6 cut(s) 71, 788, 884, 933, 953, 1175
MboI GATC 6 cut(s) 69, 786, 882, 931, 951, 1173
MboII GAAGA 7 cut(s) 31, 34, 145, 479, 727, 1358, 1419
MhlI GDGCHC 5 cut(s) 264, 534, 1075, 1263, 1464
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 6 cut(s) 182, 214, 607, 820, 967, 1039
MluNI TGGCCA 1 cut(s) 89
MlyI GAGTC 3 cut(s) 474, 527, 824
MmeI TCCRAC 1 cut(s) 657
Mox20I TGGCCA 1 cut(s) 89
MscI TGGCCA 1 cut(s) 89
MseI TTAA 3 cut(s) 213, 291, 639
MslI CAYNNNNRTG 1 cut(s) 947
Msp20I TGGCCA 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 1103
MspI CCGG 2 cut(s) 221, 534
MspR9I CCNGG 4 cut(s) 91, 221, 302, 534
MvaI CCWGG 2 cut(s) 91, 302
MwoI GCNNNNNNNGC 4 cut(s) 538, 870, 1109, 1406
NciI CCSGG 2 cut(s) 221, 534
NdeII GATC 6 cut(s) 69, 786, 882, 931, 951, 1173
NlaIV GGNNCC 2 cut(s) 1074, 1269
NmuCI GTSAC 6 cut(s) 62, 127, 205, 400, 1153, 1291
NspI RCATGY 2 cut(s) 286, 877
NspV TTCGAA 1 cut(s) 1037
PaeI GCATGC 1 cut(s) 877
PciI ACATGT 1 cut(s) 282
PfeI GAWTC 3 cut(s) 5, 417, 600
PflFI GACNNNGTC 2 cut(s) 517, 581
PkrI GCNGC 4 cut(s) 307, 573, 1284, 1381
PleI GAGTC 3 cut(s) 474, 526, 824
PpsI GAGTC 3 cut(s) 474, 526, 824
Ppu21I YACGTR 1 cut(s) 733
PscI ACATGT 1 cut(s) 282
Psp124BI GAGCTC 2 cut(s) 264, 1464
Psp6I CCWGG 2 cut(s) 89, 300
PspFI CCCAGC 2 cut(s) 1068, 1099
PspGI CCWGG 2 cut(s) 89, 300
PspN4I GGNNCC 2 cut(s) 1074, 1269
PspPI GGNCC 1 cut(s) 737
PstNI CAGNNNCTG 1 cut(s) 1068
PsyI GACNNNGTC 2 cut(s) 517, 581
PvuII CAGCTG 1 cut(s) 1103
RsaI GTAC 1 cut(s) 752
RsaNI GTAC 1 cut(s) 751
RseI CAYNNNNRTG 1 cut(s) 947
SacI GAGCTC 2 cut(s) 264, 1464
SaqAI TTAA 3 cut(s) 213, 291, 639
SatI GCNGC 4 cut(s) 306, 572, 1283, 1380
Sau3AI GATC 6 cut(s) 69, 786, 882, 931, 951, 1173
Sau96I GGNCC 1 cut(s) 737
SchI GAGTC 3 cut(s) 474, 527, 824
ScrFI CCNGG 4 cut(s) 91, 221, 302, 534
SduI GDGCHC 5 cut(s) 264, 534, 1075, 1263, 1464
SfaNI GCATC 3 cut(s) 110, 239, 1435
SfuI TTCGAA 1 cut(s) 1037
SinI GGWCC 1 cut(s) 737
SmiMI CAYNNNNRTG 1 cut(s) 947
SmlI CTYRAG 1 cut(s) 1463
SmoI CTYRAG 1 cut(s) 1463
SphI GCATGC 1 cut(s) 877
Sse9I AATT 6 cut(s) 182, 214, 607, 820, 967, 1039
SspI AATATT 1 cut(s) 36
SspMI CTAG 2 cut(s) 626, 1287
SstI GAGCTC 2 cut(s) 264, 1464
StyD4I CCNGG 4 cut(s) 89, 219, 300, 532
StyI CCWWGG 3 cut(s) 386, 422, 878
TaaI ACNGT 3 cut(s) 461, 1127, 1490
TaiI ACGT 1 cut(s) 735
TaqI TCGA 3 cut(s) 435, 1037, 1455
TasI AATT 6 cut(s) 182, 214, 607, 820, 967, 1039
TatI WGTACW 1 cut(s) 750
TfiI GAWTC 3 cut(s) 5, 417, 600
Tru1I TTAA 3 cut(s) 213, 291, 639
Tru9I TTAA 3 cut(s) 213, 291, 639
TscAI CASTG 5 cut(s) 464, 1130, 1162, 1268, 1278
TseFI GTSAC 6 cut(s) 62, 127, 205, 400, 1153, 1291
TseI GCWGC 4 cut(s) 305, 571, 1282, 1379
Tsp45I GTSAC 6 cut(s) 62, 127, 205, 400, 1153, 1291
TspDTI ATGAA 8 cut(s) 277, 326, 633, 728, 931, 1133, 1207, 1441
TspRI CASTG 5 cut(s) 464, 1130, 1162, 1268, 1278
Tth111I GACNNNGTC 2 cut(s) 517, 581
VpaK11BI GGWCC 1 cut(s) 737
XapI RAATTY 1 cut(s) 1039
XceI RCATGY 2 cut(s) 286, 877
XcmI CCANNNNNNNNNTGG 1 cut(s) 82
XspI CTAG 2 cut(s) 626, 1287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.