FvH4_2g05690

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0007482
Physical Location & Seq
Reverse (-)
4640752 .. 4642185
1434 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g05690.t1

Sequence Viewer

Length: 1434 bp
ATGGATTCAGAACCTCCGGTCGAAATGTACTTCTTCCCCTTCGTCGGCGGCGGCCACCAAATCCCGATGATCGACACGGCCCGAGTCTTCGCCGCCCACGGCGCCAAGTCCACCATCCTCTCCACCACTCTCTCCAACGCCCTCCGCTTCTGCAACTCCATCCACCGCGACCAAACCCACAACCGCCTCATCTCCATCCACGTCCTCGACCTCCCAAACGACGCCGTCCCACCCGACACCTCCATGTCCGCCGCCCCCTTCACCGACACCTCCGTCTTCAAACAACCCCTCCGCCACTTCCTCACCCAACACCCTCCCGACTGCATCGTCATCGACGTCTTCCACCGCTGGGCCTCTGACGTCATCGACTCCCTCGGAATCAGACGAATCGTCTTCAACGGAAACGGGTTCTTCTCCCGCTGCGTCATGCAGAACGTCGGGAAATTCGCGCCGCAGGAGAAAGTGGGTTCGGATTCGGAGCCGTTCGTGGTGCCGGGTCTGCCGGATCGGGTTGAGCTGACGAAATCTCAGCTGCCGGTTTTTGCTAGAAACAAAAGTGGGCCGGATAAGTTTGGGCAGTTGGAAGACAAGAGCTTCGGGGTTGTGGTGAACAGTTTTTATGAGTTGGAGTCGAAGTATGTTGATTATTTCAAGAAGGATTTGGGGAAGAAGGCGTGGGGGATTGGTCCTGTTTCTCTATGTAACAGAGACGAAGCGGATAAGGTCGAGAGAGGCCAAGCTGCTTCAGTTGATGAGGAGAAACTGAAGTGGTGTTTAGATTGGTTGGATTCTCAAGAGCCCGACTCGGTTGTGTACATTAGTTTCGGAAGCTTGGCTCGATTGAGTTACAAGCAACTGATCGAAATAGCTCATGGAGTTGTGAATTCGACAAATTGTTTCGTGTGGGTTGTTGGGAAAGTGTCTGAGAATGATGGTCAGAGTCATGAAGATGAGGAGAATTGGCTGTTGGATTTTGAGAAGAGAATGAGGGAGAGTGAGAGAGGGGTTGTGATAAGGGGATGGGCGCCTCAGATTTTGATGCTGGAGCATAAGGCTGTTGGTGGGTTTGTGAGTCACTGTGGGTGGAACTCGACAGTGGAGAGTGTATGTGCTGGTGTCCCGATGATCACTTGGCCGCTCTCGGCGGAGCAATTTTCGAATGAGAAGCTGATTACTGATGTGCTGGGGATTGGTGTTCAGGTTGGGAGCAAAGAGTGGGCGTCGTGGAATATGGAGAGGAAGGAAGTGATTGGGAGAGAGAAGGTTGAGGCTGCGGTGAGGAAGGTGGTAGGTGGTGGCGACGAGGCGGTGGAGATGAGGAAGAGGGCCAGAGATCTTGCGGAGAAGGCAAAGAAAGCTGTTGAAGAAGGTGGGTCATCATATGCAGAAGTGGATGCTTTGATTTCAGAGCTCAGGTCACTGAAGAAGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

478

Amino Acids

53.17

Weight (kDa)

5.66

Isoelectric Point (pI)

34.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 267 - 411 2.4e-16 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 272, 326
AatII GACGTC 2 cut(s) 339, 363
AccB1I GGYRCC 3 cut(s) 101, 490, 1024
AccBSI CCGCTC 1 cut(s) 1138
AccII CGCG 2 cut(s) 168, 449
AclWI GGATC 1 cut(s) 513
AcoI YGGCCR 2 cut(s) 52, 1133
AcsI RAATTY 2 cut(s) 443, 883
AcuI CTGAAG 2 cut(s) 729, 785
AcyI GRCGYC 6 cut(s) 102, 222, 336, 360, 1025, 1220
AfaI GTAC 2 cut(s) 29, 815
AfiI CCNNNNNNNGG 2 cut(s) 44, 349
AgsI TTSAA 4 cut(s) 280, 397, 652, 1364
AhdI GACNNNNNGTC 1 cut(s) 389
AjiI CACGTC 1 cut(s) 202
AjuI GAANNNNNNNTTGG 2 cut(s) 950, 982
AluBI AGCT 9 cut(s) 517, 532, 594, 740, 831, 869, 1168, 1358, 1411
AluI AGCT 9 cut(s) 517, 532, 594, 740, 831, 869, 1168, 1358, 1411
Alw21I GWGCWC 1 cut(s) 1413
Alw26I GTCTC 1 cut(s) 702
AlwI GGATC 1 cut(s) 513
Ama87I CYCGRG 1 cut(s) 81
AoxI GGCC 7 cut(s) 52, 78, 351, 560, 733, 1133, 1326
ApeKI GCWGC 4 cut(s) 420, 532, 740, 1271
ApoI RAATTY 2 cut(s) 443, 883
ArsI GACNNNNNNTTYG 2 cut(s) 578, 610
AspLEI GCGC 3 cut(s) 104, 451, 1027
AspS9I GGNCC 5 cut(s) 79, 351, 560, 686, 1326
AsuC2I CCSGG 1 cut(s) 495
AsuHPI GGTGA 4 cut(s) 253, 295, 619, 1288
AsuII TTCGAA 1 cut(s) 1157
AvaI CYCGRG 1 cut(s) 81
AvaII GGWCC 1 cut(s) 686
BanI GGYRCC 3 cut(s) 101, 490, 1024
BanII GRGCYC 2 cut(s) 801, 1413
BbsI GAAGAC 5 cut(s) 79, 268, 331, 385, 591
Bbv12I GWGCWC 1 cut(s) 1413
BbvI GCAGC 4 cut(s) 407, 519, 727, 1258
BccI CCATC 5 cut(s) 122, 167, 203, 926, 1014
BceAI ACGGC 4 cut(s) 93, 115, 209, 466
BcgI CGANNNNNNTGC 2 cut(s) 313, 347
BclI TGATCA 1 cut(s) 1125
BcnI CCSGG 1 cut(s) 495
BcoDI GTCTC 1 cut(s) 702
BfaI CTAG 1 cut(s) 546
BfoI RGCGCY 2 cut(s) 105, 1028
BglII AGATCT 1 cut(s) 1333
Bme1390I CCNGG 1 cut(s) 495
Bme18I GGWCC 1 cut(s) 686
BmeRI GACNNNNNGTC 1 cut(s) 389
BmeT110I CYCGRG 1 cut(s) 81
BmgBI CACGTC 1 cut(s) 202
BmgT120I GGNCC 5 cut(s) 79, 351, 560, 686, 1326
BmiI GGNNCC 4 cut(s) 103, 480, 492, 1026
BmrFI CCNGG 1 cut(s) 495
BmsI GCATC 3 cut(s) 333, 1029, 1384
BpiI GAAGAC 5 cut(s) 79, 268, 331, 385, 591
BplI GAGNNNNNCTC 2 cut(s) 788, 820
BpmI CTGGAG 1 cut(s) 1064
Bpu10I CCTNAGC 1 cut(s) 1412
Bpu14I TTCGAA 1 cut(s) 1157
BpuEI CTTGAG 1 cut(s) 777
BpuMI CCSGG 1 cut(s) 495
BsaHI GRCGYC 6 cut(s) 102, 222, 336, 360, 1025, 1220
BsaJI CCNNGG 2 cut(s) 97, 373
BsaWI WCCGGW 1 cut(s) 16
BsaXI ACNNNNNCTCC 4 cut(s) 273, 303, 620, 650
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 349
Bse118I RCCGGY 1 cut(s) 535
BseDI CCNNGG 2 cut(s) 97, 373
BseGI GGATG 5 cut(s) 114, 159, 195, 1025, 1399
BseLI CCNNNNNNNGG 2 cut(s) 44, 349
BseMII CTCAG 4 cut(s) 542, 915, 1043, 1426
BseRI GAGGAG 2 cut(s) 770, 968
BseXI GCAGC 4 cut(s) 407, 519, 727, 1258
BseYI CCCAGC 2 cut(s) 348, 1183
Bsh1236I CGCG 2 cut(s) 168, 449
Bsh1285I CGRYCG 1 cut(s) 21
BshFI GGCC 7 cut(s) 54, 80, 353, 562, 735, 1135, 1328
BshNI GGYRCC 3 cut(s) 101, 490, 1024
BsiEI CGRYCG 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 1413
BsiHKCI CYCGRG 1 cut(s) 81
BsiSI CCGG 5 cut(s) 17, 494, 503, 536, 563
BslFI GGGAC 2 cut(s) 212, 1103
BslI CCNNNNNNNGG 2 cut(s) 44, 349
BsmAI GTCTC 1 cut(s) 702
BsmBI CGTCTC 1 cut(s) 702
BsmFI GGGAC 2 cut(s) 212, 1103
BsnI GGCC 7 cut(s) 54, 80, 353, 562, 735, 1135, 1328
BsoBI CYCGRG 1 cut(s) 81
Bsp119I TTCGAA 1 cut(s) 1157
Bsp1286I GDGCHC 2 cut(s) 801, 1413
Bsp1407I TGTACA 1 cut(s) 813
Bsp143I GATC 5 cut(s) 69, 505, 858, 1125, 1333
BspANI GGCC 7 cut(s) 54, 80, 353, 562, 735, 1135, 1328
BspCNI CTCAG 4 cut(s) 541, 916, 1042, 1425
BspFNI CGCG 2 cut(s) 168, 449
BspHI TCATGA 1 cut(s) 943
BspLI GGNNCC 4 cut(s) 103, 480, 492, 1026
BspPI GGATC 1 cut(s) 513
BspT104I TTCGAA 1 cut(s) 1157
BspT107I GGYRCC 3 cut(s) 101, 490, 1024
BsrBI CCGCTC 1 cut(s) 1138
BsrFI RCCGGY 1 cut(s) 535
BsrGI TGTACA 1 cut(s) 813
BssAI RCCGGY 1 cut(s) 535
BssECI CCNNGG 2 cut(s) 97, 373
BssMI GATC 5 cut(s) 69, 505, 858, 1125, 1333
BssNI GRCGYC 6 cut(s) 102, 222, 336, 360, 1025, 1220
Bst4CI ACNGT 3 cut(s) 614, 1079, 1096
Bst6I CTCTTC 2 cut(s) 974, 1316
BstACI GRCGYC 6 cut(s) 102, 222, 336, 360, 1025, 1220
BstAUI TGTACA 1 cut(s) 813
BstBI TTCGAA 1 cut(s) 1157
BstDEI CTNAG 4 cut(s) 528, 924, 1029, 1412
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 5 cut(s) 114, 159, 195, 1025, 1399
BstFNI CGCG 2 cut(s) 168, 449
BstH2I RGCGCY 2 cut(s) 105, 1028
BstHHI GCGC 3 cut(s) 104, 451, 1027
BstKTI GATC 5 cut(s) 72, 508, 861, 1128, 1336
BstMAI GTCTC 1 cut(s) 702
BstMBI GATC 5 cut(s) 69, 505, 858, 1125, 1333
BstMCI CGRYCG 1 cut(s) 21
BstMWI GCNNNNNNNGC 4 cut(s) 101, 499, 1346, 1355
BstSCI CCNGG 1 cut(s) 493
BstUI CGCG 2 cut(s) 168, 449
BstV1I GCAGC 4 cut(s) 407, 519, 727, 1258
BstV2I GAAGAC 5 cut(s) 79, 268, 331, 385, 591
BstX2I RGATCY 1 cut(s) 1333
BstYI RGATCY 1 cut(s) 1333
BsuRI GGCC 7 cut(s) 54, 80, 353, 562, 735, 1135, 1328
BtgI CCRYGG 1 cut(s) 97
BtrI CACGTC 1 cut(s) 202
BtsCI GGATG 5 cut(s) 114, 159, 195, 1025, 1399
BtsIMutI CAGTG 3 cut(s) 1075, 1101, 1418
CciI TCATGA 1 cut(s) 943
CfoI GCGC 3 cut(s) 104, 451, 1027
Cfr10I RCCGGY 1 cut(s) 535
Cfr13I GGNCC 5 cut(s) 79, 351, 560, 686, 1326
CseI GACGC 3 cut(s) 230, 412, 1209
Csp6I GTAC 2 cut(s) 28, 814
CviAII CATG 4 cut(s) 244, 427, 872, 944
CviQI GTAC 2 cut(s) 28, 814
DdeI CTNAG 4 cut(s) 528, 924, 1029, 1412
DinI GGCGCC 2 cut(s) 103, 1026
DpnI GATC 5 cut(s) 71, 507, 860, 1127, 1335
DpnII GATC 5 cut(s) 69, 505, 858, 1125, 1333
DrdI GACNNNNNNGTC 2 cut(s) 272, 326
DriI GACNNNNNGTC 1 cut(s) 389
DseDI GACNNNNNNGTC 2 cut(s) 272, 326
EaeI YGGCCR 2 cut(s) 52, 1133
Eam1104I CTCTTC 2 cut(s) 974, 1316
Eam1105I GACNNNNNGTC 1 cut(s) 389
EarI CTCTTC 2 cut(s) 974, 1316
EciI GGCGGA 3 cut(s) 238, 281, 1160
Ecl136II GAGCTC 1 cut(s) 1411
Eco24I GRGCYC 2 cut(s) 801, 1413
Eco47I GGWCC 1 cut(s) 686
Eco53kI GAGCTC 1 cut(s) 1411
Eco57I CTGAAG 2 cut(s) 729, 785
Eco88I CYCGRG 1 cut(s) 81
EcoICRI GAGCTC 1 cut(s) 1411
EcoRI GAATTC 1 cut(s) 883
EcoT38I GRGCYC 2 cut(s) 801, 1413
EgeI GGCGCC 2 cut(s) 103, 1026
EheI GGCGCC 2 cut(s) 103, 1026
Esp3I CGTCTC 1 cut(s) 702
FaeI CATG 4 cut(s) 247, 430, 875, 947
FaqI GGGAC 2 cut(s) 212, 1103
FatI CATG 4 cut(s) 243, 426, 871, 943
FauI CCCGC 1 cut(s) 425
FauNDI CATATG 1 cut(s) 1381
FbaI TGATCA 1 cut(s) 1125
FokI GGATG 5 cut(s) 101, 146, 182, 1032, 1406
FriOI GRGCYC 2 cut(s) 801, 1413
FspBI CTAG 1 cut(s) 546
GlaI GCGC 3 cut(s) 103, 450, 1026
GsaI CCCAGC 2 cut(s) 352, 1187
GsuI CTGGAG 1 cut(s) 1064
HaeII RGCGCY 2 cut(s) 105, 1028
HaeIII GGCC 7 cut(s) 54, 80, 353, 562, 735, 1135, 1328
HapII CCGG 5 cut(s) 17, 494, 503, 536, 563
HgaI GACGC 3 cut(s) 230, 412, 1209
HhaI GCGC 3 cut(s) 104, 451, 1027
Hin1I GRCGYC 6 cut(s) 102, 222, 336, 360, 1025, 1220
Hin1II CATG 4 cut(s) 247, 430, 875, 947
Hin6I GCGC 3 cut(s) 102, 449, 1025
HinP1I GCGC 3 cut(s) 102, 449, 1025
HindIII AAGCTT 1 cut(s) 829
HpaII CCGG 5 cut(s) 17, 494, 503, 536, 563
HphI GGTGA 4 cut(s) 253, 295, 619, 1288
Hpy166II GTNNAC 3 cut(s) 111, 610, 814
Hpy188III TCNNGA 8 cut(s) 64, 317, 439, 652, 727, 794, 944, 1120
Hpy8I GTNNAC 3 cut(s) 111, 610, 814
Hpy99I CGWCG 6 cut(s) 47, 224, 338, 440, 1225, 1304
HpyAV CCTTC 9 cut(s) 49, 268, 649, 664, 1234, 1255, 1276, 1339, 1361
HpyCH4III ACNGT 3 cut(s) 614, 1079, 1096
HpyCH4IV ACGT 4 cut(s) 201, 336, 360, 435
HpyCH4V TGCA 4 cut(s) 153, 324, 430, 1385
HpyF10VI GCNNNNNNNGC 4 cut(s) 101, 499, 1346, 1355
HpyF3I CTNAG 4 cut(s) 528, 924, 1029, 1412
HpySE526I ACGT 4 cut(s) 201, 336, 360, 435
Hsp92I GRCGYC 6 cut(s) 102, 222, 336, 360, 1025, 1220
Hsp92II CATG 4 cut(s) 247, 430, 875, 947
HspAI GCGC 3 cut(s) 102, 449, 1025
KasI GGCGCC 2 cut(s) 101, 1024
Ksp22I TGATCA 1 cut(s) 1125
Kzo9I GATC 5 cut(s) 69, 505, 858, 1125, 1333
LmnI GCTCC 4 cut(s) 478, 1045, 1147, 1206
Lsp1109I GCAGC 4 cut(s) 407, 519, 727, 1258
LweI GCATC 3 cut(s) 333, 1029, 1384
MaeI CTAG 1 cut(s) 546
MaeII ACGT 4 cut(s) 201, 336, 360, 435
MaeIII GTNAC 4 cut(s) 701, 845, 1073, 1416
MalI GATC 5 cut(s) 71, 507, 860, 1127, 1335
MbiI CCGCTC 1 cut(s) 1138
MboI GATC 5 cut(s) 69, 505, 858, 1125, 1333
MflI RGATCY 1 cut(s) 1333
MhlI GDGCHC 2 cut(s) 801, 1413
MluCI AATT 5 cut(s) 443, 883, 892, 958, 1151
Mly113I GGCGCC 2 cut(s) 102, 1025
MlyI GAGTC 6 cut(s) 93, 362, 638, 797, 949, 1081
MmeI TCCRAC 5 cut(s) 159, 561, 606, 765, 948
MslI CAYNNNNRTG 2 cut(s) 242, 948
MspA1I CMGCKG 3 cut(s) 348, 420, 532
MspI CCGG 5 cut(s) 17, 494, 503, 536, 563
MspR9I CCNGG 1 cut(s) 495
MvnI CGCG 2 cut(s) 168, 449
MwoI GCNNNNNNNGC 4 cut(s) 101, 499, 1346, 1355
NarI GGCGCC 2 cut(s) 102, 1025
NciI CCSGG 1 cut(s) 495
NdeI CATATG 1 cut(s) 1381
NdeII GATC 5 cut(s) 69, 505, 858, 1125, 1333
NlaIII CATG 4 cut(s) 247, 430, 875, 947
NlaIV GGNNCC 4 cut(s) 103, 480, 492, 1026
NmeAIII GCCGAG 1 cut(s) 1121
NmuCI GTSAC 2 cut(s) 1073, 1416
NspV TTCGAA 1 cut(s) 1157
PagI TCATGA 1 cut(s) 943
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PfeI GAWTC 5 cut(s) 5, 378, 387, 473, 788
PflFI GACNNNGTC 1 cut(s) 224
PleI GAGTC 6 cut(s) 92, 362, 637, 797, 948, 1080
PluTI GGCGCC 2 cut(s) 105, 1028
PpsI GAGTC 6 cut(s) 92, 362, 637, 797, 948, 1080
Psp124BI GAGCTC 1 cut(s) 1413
PspFI CCCAGC 2 cut(s) 348, 1183
PspN4I GGNNCC 4 cut(s) 103, 480, 492, 1026
PspPI GGNCC 5 cut(s) 79, 351, 560, 686, 1326
PsuI RGATCY 1 cut(s) 1333
PsyI GACNNNGTC 1 cut(s) 224
PvuII CAGCTG 1 cut(s) 532
RsaI GTAC 2 cut(s) 29, 815
RsaNI GTAC 2 cut(s) 28, 814
RseI CAYNNNNRTG 2 cut(s) 242, 948
SacI GAGCTC 1 cut(s) 1413
Sau3AI GATC 5 cut(s) 69, 505, 858, 1125, 1333
Sau96I GGNCC 5 cut(s) 79, 351, 560, 686, 1326
SchI GAGTC 6 cut(s) 93, 362, 638, 797, 949, 1081
ScrFI CCNGG 1 cut(s) 495
SduI GDGCHC 2 cut(s) 801, 1413
SfaNI GCATC 3 cut(s) 333, 1029, 1384
SfoI GGCGCC 2 cut(s) 103, 1026
SfuI TTCGAA 1 cut(s) 1157
SinI GGWCC 1 cut(s) 686
SmiMI CAYNNNNRTG 2 cut(s) 242, 948
SmlI CTYRAG 1 cut(s) 792
SmoI CTYRAG 1 cut(s) 792
Sse9I AATT 5 cut(s) 443, 883, 892, 958, 1151
SspDI GGCGCC 2 cut(s) 101, 1024
SspMI CTAG 1 cut(s) 546
SstI GAGCTC 1 cut(s) 1413
StyD4I CCNGG 1 cut(s) 493
TaaI ACNGT 3 cut(s) 614, 1079, 1096
TaiI ACGT 4 cut(s) 204, 339, 363, 438
TasI AATT 5 cut(s) 443, 883, 892, 958, 1151
TatI WGTACW 2 cut(s) 27, 813
TauI GCSGC 6 cut(s) 51, 54, 95, 254, 454, 1138
TfiI GAWTC 5 cut(s) 5, 378, 387, 473, 788
TscAI CASTG 3 cut(s) 1082, 1101, 1425
TseFI GTSAC 2 cut(s) 1073, 1416
TseI GCWGC 4 cut(s) 420, 532, 740, 1271
Tsp45I GTSAC 2 cut(s) 1073, 1416
TspDTI ATGAA 1 cut(s) 960
TspGWI ACGGA 2 cut(s) 262, 414
TspRI CASTG 3 cut(s) 1082, 1101, 1425
Tth111I GACNNNGTC 1 cut(s) 224
VpaK11BI GGWCC 1 cut(s) 686
XapI RAATTY 2 cut(s) 443, 883
XspI CTAG 1 cut(s) 546
ZraI GACGTC 2 cut(s) 337, 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.