Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007482

Physical Location & Seq

Genomic Coordinates Reverse (-)

34419600 .. 34420318

Gene Structure 719 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31828

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGATACAGAATGTCAACCATTTTGGGCCGCACGAGAAATTGGGCTCCGATTTAGAGCTTTTGTTAGTGCCGGGTCTACTTGATTGGGTCGAATTGACGAAATCTCAGCTGCCTATGTTCGCTAGAAACAAAGGTGGGCCTGATAAGTTTGGGCAATTGGAGGATAAGAGCTTTGGGGTTGTGGTTAATAGCTCCTATGAATTGGAGTCAAAATATGCTGACTATTTCAAGAATGAATTGGGGAAGAAGGCATGGGGGATCGGCCCGGTTTCACTATGCAACAAAGATGAAGTTGAAAAATCTGAGAGAGGCAAAGCTGCTTCGGTTGATGAGGATAATCTGAAATGGTGTTTGAATTGTTTTGGAAGCTTGGCTCAATTGCCTTATAAACAACTTATCGAAATCGCTCATGGGCTTGATGATTCTAAGCAGGCTTTTGTCTGGGTTATTGGGAAAGTGTTTACATATGAGAATAAGGATCATGAATATGAGGAAAATTGGCTTGTGGGTTTTGAGATGAGAATGAGGGAGAGTCCAAGAGGGGTTGTGATAAGGGGATGGGCTCCTCAGATTTTGATGTTGGAGCATAAGTTTGTAGGATGGTTTGTGAGTTACTATAGGTGGAACTCGACATTGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

225

Amino Acids

26.17

Weight (kDa)

5.68

Isoelectric Point (pI)

28.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007482)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05690 FvH4_2g05700
malus_domestica	MD05G1085400.v1.1 MD05G1085600.v1.1
prunus_persica	Prupe.8G129600_v2.0.a1 Prupe.8G129700_v2.0.a1
pyrus_communis	pycom05g08480 pycom05g08490
rosa_chinensis	RchiOBHm_Chr5g0039721 RchiOBHm_Chr6g0256571
rosa_laevigata	RLG00000014758 RLG00000014761
rosa_multiflora	Rmu_sc0000103.1_g000010 Rmu_sc0003012.1_g000017 Rmu_sc0003012.1_g000019 Rmu_ssc0000052.1_g000002
rosa_roxburghii	Rroxscaffold_7G00209220 Rroxscaffold_7G00209230
rosa_rugosa	Rorug05G0181400 Rorug05G0564700 Rorug05G0564700
rosa_samantha	Rh6BG074800 Rh6CG071700
rosa_wichuraiana	Rw6G007400 Rw6G007420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	387
AccI	GTMKAC	1 cut(s)	76
AciI	CCGC	1 cut(s)	29
AclWI	GGATC	2 cut(s)	266, 486
AgsI	TTSAA	3 cut(s)	229, 296, 355
AjuI	GAANNNNNNNTTGG	2 cut(s)	617, 649
AluBI	AGCT	6 cut(s)	58, 109, 171, 192, 317, 369
AluI	AGCT	6 cut(s)	58, 109, 171, 192, 317, 369
AlwI	GGATC	2 cut(s)	266, 486
AoxI	GGCC	3 cut(s)	26, 137, 262
ApeKI	GCWGC	2 cut(s)	109, 317
AspS9I	GGNCC	3 cut(s)	26, 137, 263
AsuC2I	CCSGG	2 cut(s)	72, 266
BanII	GRGCYC	2 cut(s)	47, 565
BauI	CACGAG	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	96, 304
BccI	CCATC	2 cut(s)	552, 594
BcnI	CCSGG	2 cut(s)	72, 266
BfaI	CTAG	1 cut(s)	123
BfmI	CTRYAG	1 cut(s)	616
BisI	GCNGC	3 cut(s)	29, 110, 318
BlsI	GCNGC	3 cut(s)	30, 111, 319
Bme1390I	CCNGG	2 cut(s)	72, 266
BmgT120I	GGNCC	3 cut(s)	26, 137, 263
BmiI	GGNNCC	2 cut(s)	46, 564
BmrFI	CCNGG	2 cut(s)	72, 266
BpuMI	CCSGG	2 cut(s)	72, 266
BsaXI	ACNNNNNCTCC	2 cut(s)	575, 605
BseGI	GGATG	2 cut(s)	563, 605
BseMII	CTCAG	3 cut(s)	119, 294, 581
BseRI	GAGGAG	1 cut(s)	555
BseXI	GCAGC	2 cut(s)	96, 304
BshFI	GGCC	3 cut(s)	28, 139, 264
BsiSI	CCGG	2 cut(s)	71, 266
BsnI	GGCC	3 cut(s)	28, 139, 264
Bsp1286I	GDGCHC	2 cut(s)	47, 565
Bsp143I	GATC	2 cut(s)	258, 478
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	3 cut(s)	28, 139, 264
BspCNI	CTCAG	3 cut(s)	118, 295, 580
BspHI	TCATGA	1 cut(s)	481
BspLI	GGNNCC	2 cut(s)	46, 564
BspPI	GGATC	2 cut(s)	266, 486
BssMI	GATC	2 cut(s)	258, 478
BssSI	CACGAG	1 cut(s)	32
Bst2BI	CACGAG	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	4 cut(s)	105, 303, 426, 567
BstF5I	GGATG	2 cut(s)	563, 605
BstKTI	GATC	2 cut(s)	261, 481
BstMBI	GATC	2 cut(s)	258, 478
BstSCI	CCNGG	2 cut(s)	70, 264
BstSFI	CTRYAG	1 cut(s)	616
BstV1I	GCAGC	2 cut(s)	96, 304
BsuRI	GGCC	3 cut(s)	28, 139, 264
BtsCI	GGATG	2 cut(s)	563, 605
Cac8I	GCNNGC	1 cut(s)	432
CciI	TCATGA	1 cut(s)	481
Cfr13I	GGNCC	3 cut(s)	26, 137, 263
CviAII	CATG	3 cut(s)	252, 410, 482
DdeI	CTNAG	4 cut(s)	105, 303, 426, 567
DpnI	GATC	2 cut(s)	260, 480
DpnII	GATC	2 cut(s)	258, 478
Eco24I	GRGCYC	2 cut(s)	47, 565
EcoT38I	GRGCYC	2 cut(s)	47, 565
FaeI	CATG	3 cut(s)	255, 413, 485
FatI	CATG	3 cut(s)	251, 409, 481
FauNDI	CATATG	1 cut(s)	466
FblI	GTMKAC	1 cut(s)	76
Fnu4HI	GCNGC	3 cut(s)	29, 110, 318
FokI	GGATG	2 cut(s)	570, 612
FriOI	GRGCYC	2 cut(s)	47, 565
Fsp4HI	GCNGC	3 cut(s)	29, 110, 318
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	3 cut(s)	29, 110, 318
HaeIII	GGCC	3 cut(s)	28, 139, 264
HapII	CCGG	2 cut(s)	71, 266
Hin1II	CATG	3 cut(s)	255, 413, 485
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HindIII	AAGCTT	1 cut(s)	367
HinfI	GANTC	3 cut(s)	206, 422, 532
HpaII	CCGG	2 cut(s)	71, 266
Hpy166II	GTNNAC	3 cut(s)	16, 77, 462
Hpy188I	TCNGA	4 cut(s)	49, 304, 342, 570
Hpy188III	TCNNGA	2 cut(s)	229, 482
Hpy8I	GTNNAC	3 cut(s)	16, 77, 462
HpyAV	CCTTC	1 cut(s)	241
HpyCH4V	TGCA	1 cut(s)	279
HpyF3I	CTNAG	4 cut(s)	105, 303, 426, 567
Hsp92II	CATG	3 cut(s)	255, 413, 485
Kzo9I	GATC	2 cut(s)	258, 478
LmnI	GCTCC	4 cut(s)	50, 197, 568, 583
LpnPI	CCDG	5 cut(s)	84, 153, 279, 416, 427
Lsp1109I	GCAGC	2 cut(s)	96, 304
MaeI	CTAG	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	611
MalI	GATC	2 cut(s)	260, 480
MboI	GATC	2 cut(s)	258, 478
MboII	GAAGA	1 cut(s)	256
MfeI	CAATTG	2 cut(s)	155, 377
MhlI	GDGCHC	2 cut(s)	47, 565
MluCI	AATT	8 cut(s)	38, 92, 155, 200, 236, 355, 377, 496
MlyI	GAGTC	2 cut(s)	215, 541
MmeI	TCCRAC	1 cut(s)	561
MnlI	CCTC	7 cut(s)	154, 302, 325, 484, 519, 533, 576
MseI	TTAA	1 cut(s)	186
MslI	CAYNNNNRTG	1 cut(s)	486
MspA1I	CMGCKG	1 cut(s)	109
MspI	CCGG	2 cut(s)	71, 266
MspR9I	CCNGG	2 cut(s)	72, 266
MunI	CAATTG	2 cut(s)	155, 377
NciI	CCSGG	2 cut(s)	72, 266
NdeI	CATATG	1 cut(s)	466
NdeII	GATC	2 cut(s)	258, 478
NlaIII	CATG	3 cut(s)	255, 413, 485
NlaIV	GGNNCC	2 cut(s)	46, 564
PagI	TCATGA	1 cut(s)	481
PfeI	GAWTC	1 cut(s)	422
PkrI	GCNGC	3 cut(s)	30, 111, 319
PleI	GAGTC	2 cut(s)	214, 540
PpsI	GAGTC	2 cut(s)	214, 540
PsiI	TTATAA	1 cut(s)	387
PspN4I	GGNNCC	2 cut(s)	46, 564
PspPI	GGNCC	3 cut(s)	26, 137, 263
PvuII	CAGCTG	1 cut(s)	109
RseI	CAYNNNNRTG	1 cut(s)	486
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	3 cut(s)	29, 110, 318
Sau3AI	GATC	2 cut(s)	258, 478
Sau96I	GGNCC	3 cut(s)	26, 137, 263
SchI	GAGTC	2 cut(s)	215, 541
ScrFI	CCNGG	2 cut(s)	72, 266
SduI	GDGCHC	2 cut(s)	47, 565
SetI	ASST	8 cut(s)	60, 111, 136, 173, 194, 319, 371, 623
SfcI	CTRYAG	1 cut(s)	616
SmiMI	CAYNNNNRTG	1 cut(s)	486
Sse9I	AATT	8 cut(s)	38, 92, 155, 200, 236, 355, 377, 496
SsiI	CCGC	1 cut(s)	29
SspMI	CTAG	1 cut(s)	123
StyD4I	CCNGG	2 cut(s)	70, 264
TaqI	TCGA	3 cut(s)	90, 399, 629
TasI	AATT	8 cut(s)	38, 92, 155, 200, 236, 355, 377, 496
TauI	GCSGC	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TseI	GCWGC	2 cut(s)	109, 317
TspDTI	ATGAA	4 cut(s)	213, 249, 303, 498
XmiI	GTMKAC	1 cut(s)	76
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.