Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000103.1

Orthogroup ID

OG0007482

Physical Location & Seq

Genomic Coordinates Reverse (-)

46698 .. 48915

Gene Structure 2218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000103.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

atgttcccgaacgatgccgtctcccctgacacctctatgtttgttgcccccttcatcgacatgtacctccatgttctaagaacccctaaagcaagtcctcacccaaaaccctcccgactgcatcgttatcgagagcttttgttagtgtcgggtctgcttgattgggtcgaattgacgaaatctcagctgcctatgttcgccagaaacaaaggtgggcctgataagtttggggttgtggttaatagctcctatgaattggagtcaaaatatgctgactatttcaagaatgaattggggaagaaggcatgggggatcggcccggtttcactatgcaacaaagatgaagttgaaaaatctgagagaggcaaagctgcttcggttgatgaggataatctgaaatgttttggaagcttggctcaattgccttataaacaacttatcgaaatcgctcatgggcttgatgattctaagcaggcttttgtctgggttattgggaaagtgtttacatatgagaataaggatcatgaagatgaggaaaattggcttgtgtgttttgagaagagaatgagggagagtccaagaggggttgtgataaggggatgggctcctcagattttgatgttggagcataagtttgtaggctggtttggtttgaatctttctacctgttcggcggtgctcgaggtcggtgggggtatcctcgccactgatgggcctttaccggacgagtgtttgaaggctaattgcttggaaagttctgacagaggggtgttgacccaaggtctggctaaatggtttaatttaacgcctccgcgcgacccaacccaaacccgacgacccgacccgactgattctctcaccttcggccatctccggcgacgggacaagccgaaaactactcagatcagcgtcatgctttgccctatggtgttggtttgcacggtggttcactggaaagtggagatcatagcagctacagtcgacgcaatcgggacccggtcggaagttcatttttccggcgacctctcggccgatccttctcggtttcggaatctcctcctcctcctcctaatcatcctcatacctaccttgaatgacgattttttttgtggagtggaagatcaagggttgaagatcagcggtgcacagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

UDPGT

Protein Analysis

383

Amino Acids

42.89

Weight (kDa)

6.17

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007482)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g05690 FvH4_2g05700
malus_domestica	MD05G1085400.v1.1 MD05G1085600.v1.1
prunus_persica	Prupe.8G129600_v2.0.a1 Prupe.8G129700_v2.0.a1
pyrus_communis	pycom05g08480 pycom05g08490
rosa_chinensis	RchiOBHm_Chr5g0039721 RchiOBHm_Chr6g0256571
rosa_laevigata	RLG00000014758 RLG00000014761
rosa_multiflora	Rmu_sc0000103.1_g000010 Rmu_sc0003012.1_g000017 Rmu_sc0003012.1_g000019 Rmu_ssc0000052.1_g000002
rosa_roxburghii	Rroxscaffold_7G00209220 Rroxscaffold_7G00209230
rosa_rugosa	Rorug05G0181400 Rorug05G0564700 Rorug05G0564700
rosa_samantha	Rh6BG074800 Rh6CG071700
rosa_wichuraiana	Rw6G007400 Rw6G007420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	429
AccB7I	CCANNNNNTGG	1 cut(s)	784
AccI	GTMKAC	1 cut(s)	981
AccII	CGCG	2 cut(s)	814, 816
AciI	CCGC	3 cut(s)	674, 812, 1140
AclWI	GGATC	3 cut(s)	320, 528, 1028
AcoI	YGGCCR	2 cut(s)	865, 1029
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	3 cut(s)	711, 784, 880
AflIII	ACRYGT	1 cut(s)	60
AgsI	TTSAA	6 cut(s)	283, 350, 655, 736, 1093, 1132
AhdI	GACNNNNNGTC	1 cut(s)	780
AluBI	AGCT	6 cut(s)	136, 187, 246, 371, 411, 974
AluI	AGCT	6 cut(s)	136, 187, 246, 371, 411, 974
Alw21I	GWGCWC	2 cut(s)	681, 1147
Alw26I	GTCTC	1 cut(s)	25
Alw44I	GTGCAC	1 cut(s)	1143
AlwI	GGATC	3 cut(s)	320, 528, 1028
Ama87I	CYCGRG	1 cut(s)	680
AoxI	GGCC	5 cut(s)	215, 316, 713, 865, 1029
ApaLI	GTGCAC	1 cut(s)	1143
ApeKI	GCWGC	3 cut(s)	187, 371, 971
AspLEI	GCGC	1 cut(s)	816
AspS9I	GGNCC	4 cut(s)	215, 317, 713, 993
AsuC2I	CCSGG	2 cut(s)	320, 997
AsuHPI	GGTGA	2 cut(s)	92, 850
AvaI	CYCGRG	1 cut(s)	680
AvaII	GGWCC	1 cut(s)	993
BaeGI	GKGCMC	1 cut(s)	1147
BanII	GRGCYC	1 cut(s)	607
Bbv12I	GWGCWC	2 cut(s)	681, 1147
BbvI	GCAGC	3 cut(s)	174, 358, 983
BccI	CCATC	3 cut(s)	594, 704, 876
BceAI	ACGGC	1 cut(s)	2
BcgI	CGANNNNNNTGC	2 cut(s)	110, 144
BciVI	GTATCC	1 cut(s)	707
BcnI	CCSGG	2 cut(s)	320, 997
BcoDI	GTCTC	1 cut(s)	25
BfmI	CTRYAG	1 cut(s)	975
BfuI	GTATCC	1 cut(s)	707
BisI	GCNGC	3 cut(s)	188, 372, 972
BlsI	GCNGC	3 cut(s)	189, 373, 973
Bme1390I	CCNGG	2 cut(s)	320, 997
Bme18I	GGWCC	1 cut(s)	993
BmeRI	GACNNNNNGTC	1 cut(s)	780
BmeT110I	CYCGRG	1 cut(s)	680
BmgT120I	GGNCC	4 cut(s)	215, 317, 713, 993
BmiI	GGNNCC	3 cut(s)	606, 994, 995
BmrFI	CCNGG	2 cut(s)	320, 997
BmsI	GCATC	2 cut(s)	4, 130
BpuMI	CCSGG	2 cut(s)	320, 997
BsaJI	CCNNGG	1 cut(s)	778
BsaWI	WCCGGW	1 cut(s)	721
BsaXI	ACNNNNNCTCC	2 cut(s)	617, 647
Bsc4I	CCNNNNNNNGG	3 cut(s)	711, 784, 880
Bse1I	ACTGG	1 cut(s)	956
BseDI	CCNNGG	1 cut(s)	778
BseGI	GGATG	2 cut(s)	605, 1074
BseLI	CCNNNNNNNGG	3 cut(s)	711, 784, 880
BseMII	CTCAG	4 cut(s)	197, 348, 623, 914
BseNI	ACTGG	1 cut(s)	956
BseRI	GAGGAG	5 cut(s)	597, 1046, 1049, 1052, 1055
BseSI	GKGCMC	1 cut(s)	1147
BseX3I	CGGCCG	1 cut(s)	1029
BseXI	GCAGC	3 cut(s)	174, 358, 983
Bsh1236I	CGCG	2 cut(s)	814, 816
Bsh1285I	CGRYCG	2 cut(s)	1001, 1032
BshFI	GGCC	5 cut(s)	217, 318, 715, 867, 1031
BsiEI	CGRYCG	2 cut(s)	1001, 1032
BsiHKAI	GWGCWC	2 cut(s)	681, 1147
BsiHKCI	CYCGRG	1 cut(s)	680
BsiSI	CCGG	5 cut(s)	320, 722, 874, 997, 1017
BslFI	GGGAC	2 cut(s)	896, 1006
BslI	CCNNNNNNNGG	3 cut(s)	711, 784, 880
BsmAI	GTCTC	1 cut(s)	25
BsmBI	CGTCTC	1 cut(s)	25
BsmFI	GGGAC	2 cut(s)	896, 1006
BsnI	GGCC	5 cut(s)	217, 318, 715, 867, 1031
BsoBI	CYCGRG	1 cut(s)	680
Bsp1286I	GDGCHC	3 cut(s)	607, 681, 1147
Bsp143I	GATC	7 cut(s)	312, 520, 903, 963, 1033, 1120, 1134
BspACI	CCGC	3 cut(s)	674, 812, 1140
BspANI	GGCC	5 cut(s)	217, 318, 715, 867, 1031
BspCNI	CTCAG	4 cut(s)	196, 349, 622, 913
BspFNI	CGCG	2 cut(s)	814, 816
BspHI	TCATGA	1 cut(s)	523
BspLI	GGNNCC	3 cut(s)	606, 994, 995
BspPI	GGATC	3 cut(s)	320, 528, 1028
BsrI	ACTGG	1 cut(s)	956
BssECI	CCNNGG	1 cut(s)	778
BssMI	GATC	7 cut(s)	312, 520, 903, 963, 1033, 1120, 1134
BssT1I	CCWWGG	1 cut(s)	778
Bst4CI	ACNGT	3 cut(s)	943, 979, 1149
Bst6I	CTCTTC	1 cut(s)	554
BstC8I	GCNNGC	1 cut(s)	474
BstDEI	CTNAG	6 cut(s)	77, 183, 357, 468, 609, 900
BstF5I	GGATG	2 cut(s)	605, 1074
BstFNI	CGCG	2 cut(s)	814, 816
BstHHI	GCGC	1 cut(s)	816
BstKTI	GATC	7 cut(s)	315, 523, 906, 966, 1036, 1123, 1137
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	7 cut(s)	312, 520, 903, 963, 1033, 1120, 1134
BstMCI	CGRYCG	2 cut(s)	1001, 1032
BstNSI	RCATGY	1 cut(s)	64
BstSCI	CCNGG	2 cut(s)	318, 995
BstSFI	CTRYAG	1 cut(s)	975
BstSLI	GKGCMC	1 cut(s)	1147
BstUI	CGCG	2 cut(s)	814, 816
BstV1I	GCAGC	3 cut(s)	174, 358, 983
BstZI	CGGCCG	1 cut(s)	1029
BsuI	GTATCC	1 cut(s)	707
BsuRI	GGCC	5 cut(s)	217, 318, 715, 867, 1031
BtsCI	GGATG	2 cut(s)	605, 1074
BtsIMutI	CAGTG	2 cut(s)	705, 949
Cac8I	GCNNGC	1 cut(s)	474
CciI	TCATGA	1 cut(s)	523
CfoI	GCGC	1 cut(s)	816
Cfr13I	GGNCC	4 cut(s)	215, 317, 713, 993
CseI	GACGC	2 cut(s)	898, 992
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	6 cut(s)	61, 71, 306, 452, 524, 913
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	6 cut(s)	77, 183, 357, 468, 609, 900
DpnI	GATC	7 cut(s)	314, 522, 905, 965, 1035, 1122, 1136
DpnII	GATC	7 cut(s)	312, 520, 903, 963, 1033, 1120, 1134
DriI	GACNNNNNGTC	1 cut(s)	780
EaeI	YGGCCR	2 cut(s)	865, 1029
EagI	CGGCCG	1 cut(s)	1029
Eam1104I	CTCTTC	1 cut(s)	554
Eam1105I	GACNNNNNGTC	1 cut(s)	780
EarI	CTCTTC	1 cut(s)	554
EclXI	CGGCCG	1 cut(s)	1029
Eco130I	CCWWGG	1 cut(s)	778
Eco24I	GRGCYC	1 cut(s)	607
Eco47I	GGWCC	1 cut(s)	993
Eco52I	CGGCCG	1 cut(s)	1029
Eco88I	CYCGRG	1 cut(s)	680
EcoO109I	RGGNCCY	1 cut(s)	993
EcoT14I	CCWWGG	1 cut(s)	778
EcoT38I	GRGCYC	1 cut(s)	607
ErhI	CCWWGG	1 cut(s)	778
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	6 cut(s)	64, 74, 309, 455, 527, 916
FaqI	GGGAC	2 cut(s)	896, 1006
FatI	CATG	6 cut(s)	60, 70, 305, 451, 523, 912
FauNDI	CATATG	1 cut(s)	508
FblI	GTMKAC	1 cut(s)	981
Fnu4HI	GCNGC	3 cut(s)	188, 372, 972
FokI	GGATG	2 cut(s)	612, 1061
FriOI	GRGCYC	1 cut(s)	607
Fsp4HI	GCNGC	3 cut(s)	188, 372, 972
GlaI	GCGC	1 cut(s)	815
GluI	GCNGC	3 cut(s)	188, 372, 972
HaeIII	GGCC	5 cut(s)	217, 318, 715, 867, 1031
HapII	CCGG	5 cut(s)	320, 722, 874, 997, 1017
HgaI	GACGC	2 cut(s)	898, 992
HhaI	GCGC	1 cut(s)	816
Hin1II	CATG	6 cut(s)	64, 74, 309, 455, 527, 916
Hin6I	GCGC	1 cut(s)	814
HinP1I	GCGC	1 cut(s)	814
HincII	GTYRAC	2 cut(s)	774, 982
HindII	GTYRAC	2 cut(s)	774, 982
HindIII	AAGCTT	1 cut(s)	409
HinfI	GANTC	6 cut(s)	260, 464, 574, 655, 851, 1051
HpaII	CCGG	5 cut(s)	320, 722, 874, 997, 1017
HphI	GGTGA	2 cut(s)	92, 850
Hpy166II	GTNNAC	5 cut(s)	504, 774, 949, 982, 1145
Hpy188I	TCNGA	7 cut(s)	358, 396, 612, 760, 903, 1003, 1050
Hpy188III	TCNNGA	6 cut(s)	7, 114, 131, 283, 524, 991
Hpy8I	GTNNAC	5 cut(s)	504, 774, 949, 982, 1145
Hpy99I	CGWCG	3 cut(s)	837, 882, 986
HpyAV	CCTTC	5 cut(s)	61, 295, 730, 871, 1047
HpyCH4III	ACNGT	3 cut(s)	943, 979, 1149
HpyCH4V	TGCA	4 cut(s)	121, 333, 939, 1145
HpyF3I	CTNAG	6 cut(s)	77, 183, 357, 468, 609, 900
Hsp92II	CATG	6 cut(s)	64, 74, 309, 455, 527, 916
HspAI	GCGC	1 cut(s)	814
KflI	GGGWCCC	1 cut(s)	993
Kzo9I	GATC	7 cut(s)	312, 520, 903, 963, 1033, 1120, 1134
LmnI	GCTCC	3 cut(s)	251, 610, 625
Lsp1109I	GCAGC	3 cut(s)	174, 358, 983
LweI	GCATC	2 cut(s)	4, 130
MalI	GATC	7 cut(s)	314, 522, 905, 965, 1035, 1122, 1136
MboI	GATC	7 cut(s)	312, 520, 903, 963, 1033, 1120, 1134
MboII	GAAGA	5 cut(s)	310, 539, 571, 1130, 1144
MfeI	CAATTG	1 cut(s)	419
MhlI	GDGCHC	3 cut(s)	607, 681, 1147
MluCI	AATT	7 cut(s)	170, 254, 290, 419, 538, 742, 799
MlyI	GAGTC	2 cut(s)	269, 583
MmeI	TCCRAC	2 cut(s)	603, 981
MseI	TTAA	3 cut(s)	240, 798, 803
MslI	CAYNNNNRTG	3 cut(s)	35, 59, 528
MspA1I	CMGCKG	2 cut(s)	187, 1140
MspI	CCGG	5 cut(s)	320, 722, 874, 997, 1017
MspR9I	CCNGG	2 cut(s)	320, 997
MunI	CAATTG	1 cut(s)	419
MvnI	CGCG	2 cut(s)	814, 816
NciI	CCSGG	2 cut(s)	320, 997
NdeI	CATATG	1 cut(s)	508
NdeII	GATC	7 cut(s)	312, 520, 903, 963, 1033, 1120, 1134
NlaIII	CATG	6 cut(s)	64, 74, 309, 455, 527, 916
NlaIV	GGNNCC	3 cut(s)	606, 994, 995
NmeAIII	GCCGAG	1 cut(s)	1007
NspI	RCATGY	1 cut(s)	64
PaeR7I	CTCGAG	1 cut(s)	680
PagI	TCATGA	1 cut(s)	523
PciI	ACATGT	1 cut(s)	60
PfeI	GAWTC	4 cut(s)	464, 655, 851, 1051
PflFI	GACNNNGTC	1 cut(s)	997
PflMI	CCANNNNNTGG	1 cut(s)	784
PkrI	GCNGC	3 cut(s)	189, 373, 973
PleI	GAGTC	2 cut(s)	268, 582
PpsI	GAGTC	2 cut(s)	268, 582
PpuMI	RGGWCCY	1 cut(s)	993
PscI	ACATGT	1 cut(s)	60
PsiI	TTATAA	1 cut(s)	429
Psp5II	RGGWCCY	1 cut(s)	993
PspN4I	GGNNCC	3 cut(s)	606, 994, 995
PspPI	GGNCC	4 cut(s)	215, 317, 713, 993
PspPPI	RGGWCCY	1 cut(s)	993
PspXI	VCTCGAGB	1 cut(s)	680
PsyI	GACNNNGTC	1 cut(s)	997
PvuII	CAGCTG	1 cut(s)	187
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
RseI	CAYNNNNRTG	3 cut(s)	35, 59, 528
SalI	GTCGAC	1 cut(s)	980
SaqAI	TTAA	3 cut(s)	240, 798, 803
SatI	GCNGC	3 cut(s)	188, 372, 972
Sau3AI	GATC	7 cut(s)	312, 520, 903, 963, 1033, 1120, 1134
Sau96I	GGNCC	4 cut(s)	215, 317, 713, 993
SchI	GAGTC	2 cut(s)	269, 583
ScrFI	CCNGG	2 cut(s)	320, 997
SduI	GDGCHC	3 cut(s)	607, 681, 1147
SfaNI	GCATC	2 cut(s)	4, 130
SfcI	CTRYAG	1 cut(s)	975
Sfr274I	CTCGAG	1 cut(s)	680
SinI	GGWCC	1 cut(s)	993
SlaI	CTCGAG	1 cut(s)	680
SmiMI	CAYNNNNRTG	3 cut(s)	35, 59, 528
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
Sse9I	AATT	7 cut(s)	170, 254, 290, 419, 538, 742, 799
SsiI	CCGC	3 cut(s)	674, 812, 1140
StyD4I	CCNGG	2 cut(s)	318, 995
StyI	CCWWGG	1 cut(s)	778
TaaI	ACNGT	3 cut(s)	943, 979, 1149
TaqI	TCGA	6 cut(s)	57, 130, 168, 441, 681, 981
TasI	AATT	7 cut(s)	170, 254, 290, 419, 538, 742, 799
TfiI	GAWTC	4 cut(s)	464, 655, 851, 1051
Tru1I	TTAA	3 cut(s)	240, 798, 803
Tru9I	TTAA	3 cut(s)	240, 798, 803
TscAI	CASTG	2 cut(s)	712, 956
TseI	GCWGC	3 cut(s)	187, 371, 971
TspDTI	ATGAA	6 cut(s)	43, 267, 303, 357, 540, 998
TspRI	CASTG	2 cut(s)	712, 956
Tth111I	GACNNNGTC	1 cut(s)	997
Van91I	CCANNNNNTGG	1 cut(s)	784
VneI	GTGCAC	1 cut(s)	1143
VpaK11BI	GGWCC	1 cut(s)	993
XceI	RCATGY	1 cut(s)	64
XhoI	CTCGAG	1 cut(s)	680
XmiI	GTMKAC	1 cut(s)	981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.