Rroxscaffold_7G00209230

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0007482
Physical Location & Seq
Forward (+)
59531761 .. 59533196
1436 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00209230.1

Sequence Viewer

Length: 1356 bp
ATGGATTCAGAACCTCCAGTTGAAATGTACTTCTTCCCATTCGTCGGCGGCGGCCACCAAATCCCGATGATCGACACCGCCCGAGTCTTCGCCGCCCACGGCGCCAAGTCCACCATCCTCTCCACCACTCTCTCCAACGCCCTCCGCTTCCGCAATTCCATCCACCGCGACCAAACCCTCAACCGCCGAATCACCATCCACGTCCTCGACCTCCCAAACGACGCCGCTCCCCCCGACACCTCCATGTCCGCCGCCCCCTTCACCGACACCTCCGTCTTCCAACAACCCTCAAGCAATTCCTCACCCAATACCCTCCCGACTGCATCGTCATCGACATCTTCCACCGCTGGGCCTCTGACCCGATTTCGGCCGCACGAGAAACTGGGTTCCGATTCGGAGCCGTTTGTGGTGCCGGGTCTGCCTGATCGGGTCGAATTGACGAAATCCCAGCTCCCTGTTTTCTCCAGAAACAAAGGTGGGCCTGATAAGATTGGGCAATCGGAAGATAAGAGCTTCGGGGTTGTGGTGAACAGCTTCTATGAATTGGAGTCGAAATATGCTGACTATTTCAAGAAGGAATTGGGGAAGAAGGCGTGGGGGATCGGCCCGGTTTCGCTATGCAACAGGGACGAAGCTGATAAATCTGAGAGGGGACAAGCTGCTTCTGTTGATGAGGAGAACATGAAGTGGTGTTTGAATTGGTTGGATTCTCAAGAACCTAACTCGGTTGTGTACATTAGTTTCGGAAGCTTGGTTCGATTGTCTTATAAGCAACTGATTGAGATCGCTCATGGGCTTGAGAATTCTAAGCAGGGTTTTGTCTGGGTTATTGGGAAAGTGTCTACATCTGAGAATGAGAATCATGAAGATGAGGAAAATTGGCTTGTGGATTTTGAGAAGAGGATGAGGGAGAGTCGAAGAGGGGTTGTGATAAGGGGATGGGCTCCTCAGATTTTGATGCTGGAGCATAAGTCTGTGGGTGGGTTTGTGAGTCACTGTGGGTGGAACTCAACACTGGAGAGTGTCTGCGCCGGTGTGCCGATGATCACGTGGCCGCTCTCGGCGGAGCAGTTCTCGAATGAGAAGCTGATTACTGATTTGTTGGGGATTGGTGTTCAGGTTGGGAGCAAAGAGTGGGCGTCGTGGAATATAGAGAGGAAGGAGTTGATTGGGAGAGAGAAGGTGGAAGTTGCGGTGAGTAGGGTGGTGGGTGGTGGCGATGAGGCGGTGGAGATGAGGAAGAGAGCCAGAGATCTTGCGGAGAAGGCAAAGAGAGCTGTTGAAGAAGGTGGGTCATCATATGCAGAAGTGGATGCTCTGATTTCAGAGCTCAAGTCACTGAAGGAGAAGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00906 ko01100 ko01110 map00906 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

451

Amino Acids

49.92

Weight (kDa)

5.65

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 237 - 379 4.4e-19 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 768
AasI GACNNNNNNGTC 2 cut(s) 272, 325
AccB1I GGYRCC 2 cut(s) 101, 409
AccBSI CCGCTC 2 cut(s) 227, 1057
AccI GTMKAC 1 cut(s) 842
AccII CGCG 1 cut(s) 168
AclWI GGATC 1 cut(s) 608
AcoI YGGCCR 3 cut(s) 52, 368, 1052
AcsI RAATTY 1 cut(s) 802
AcvI CACGTG 1 cut(s) 1050
AcyI GRCGYC 3 cut(s) 102, 222, 1139
AfaI GTAC 2 cut(s) 29, 734
AfiI CCNNNNNNNGG 3 cut(s) 44, 348, 366
AgsI TTSAA 4 cut(s) 23, 571, 697, 1283
AjiI CACGTC 1 cut(s) 202
AloI GAACNNNNNNTCC 2 cut(s) 738, 770
AluBI AGCT 9 cut(s) 451, 513, 534, 635, 659, 750, 1087, 1277, 1330
AluI AGCT 9 cut(s) 451, 513, 534, 635, 659, 750, 1087, 1277, 1330
Alw21I GWGCWC 1 cut(s) 1332
AlwI GGATC 1 cut(s) 608
Ama87I CYCGRG 1 cut(s) 81
AoxI GGCC 6 cut(s) 52, 350, 368, 479, 604, 1052
ApeKI GCWGC 1 cut(s) 659
ApoI RAATTY 1 cut(s) 802
Asp700I GAANNNNTTC 1 cut(s) 533
AspLEI GCGC 2 cut(s) 104, 1031
AspS9I GGNCC 3 cut(s) 350, 479, 605
AsuC2I CCSGG 2 cut(s) 414, 608
AsuHPI GGTGA 5 cut(s) 184, 253, 294, 538, 1207
AvaI CYCGRG 1 cut(s) 81
BanI GGYRCC 2 cut(s) 101, 409
BanII GRGCYC 2 cut(s) 946, 1332
BauI CACGAG 1 cut(s) 374
BbrPI CACGTG 1 cut(s) 1050
BbsI GAAGAC 2 cut(s) 79, 268
Bbv12I GWGCWC 1 cut(s) 1332
BbvI GCAGC 1 cut(s) 646
BccI CCATC 4 cut(s) 122, 167, 203, 933
BceAI ACGGC 2 cut(s) 115, 385
BcgI CGANNNNNNTGC 2 cut(s) 312, 346
BclI TGATCA 1 cut(s) 1044
BcnI CCSGG 2 cut(s) 414, 608
BfaI CTAG 1 cut(s) 1354
BfoI RGCGCY 1 cut(s) 105
BglII AGATCT 1 cut(s) 1252
BisI GCNGC 8 cut(s) 49, 52, 93, 225, 252, 371, 660, 1055
BlsI GCNGC 8 cut(s) 50, 53, 94, 226, 253, 372, 661, 1056
Bme1390I CCNGG 2 cut(s) 414, 608
BmeT110I CYCGRG 1 cut(s) 81
BmgBI CACGTC 1 cut(s) 202
BmgT120I GGNCC 3 cut(s) 350, 479, 605
BmiI GGNNCC 5 cut(s) 103, 388, 399, 411, 945
BmrFI CCNGG 2 cut(s) 414, 608
BmrI ACTGGG 1 cut(s) 392
BmsI GCATC 3 cut(s) 332, 948, 1303
BmuI ACTGGG 1 cut(s) 392
BpiI GAAGAC 2 cut(s) 79, 268
BplI GAGNNNNNCTC 2 cut(s) 1058, 1090
BpmI CTGGAG 3 cut(s) 448, 983, 1037
BpuEI CTTGAG 4 cut(s) 274, 696, 818, 1316
BpuMI CCSGG 2 cut(s) 414, 608
BsaAI YACGTR 1 cut(s) 1050
BsaBI GATNNNNATC 1 cut(s) 782
BsaHI GRCGYC 3 cut(s) 102, 222, 1139
BsaJI CCNNGG 1 cut(s) 97
BsaXI ACNNNNNCTCC 2 cut(s) 956, 986
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 348, 366
Bse118I RCCGGY 1 cut(s) 1031
Bse1I ACTGG 3 cut(s) 17, 387, 1020
Bse8I GATNNNNATC 1 cut(s) 782
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 6 cut(s) 114, 159, 195, 909, 944, 1318
BseJI GATNNNNATC 1 cut(s) 782
BseLI CCNNNNNNNGG 3 cut(s) 44, 348, 366
BseMII CTCAG 3 cut(s) 636, 840, 962
BseNI ACTGG 3 cut(s) 17, 387, 1020
BseRI GAGGAG 2 cut(s) 689, 936
BseX3I CGGCCG 1 cut(s) 368
BseXI GCAGC 1 cut(s) 646
BseYI CCCAGC 2 cut(s) 347, 447
Bsh1236I CGCG 1 cut(s) 168
Bsh1285I CGRYCG 1 cut(s) 371
BshFI GGCC 6 cut(s) 54, 352, 370, 481, 606, 1054
BshNI GGYRCC 2 cut(s) 101, 409
BsiEI CGRYCG 1 cut(s) 371
BsiHKAI GWGCWC 1 cut(s) 1332
BsiHKCI CYCGRG 1 cut(s) 81
BsiSI CCGG 3 cut(s) 413, 608, 1032
BslFI GGGAC 2 cut(s) 641, 666
BslI CCNNNNNNNGG 3 cut(s) 44, 348, 366
BsmFI GGGAC 2 cut(s) 641, 666
BsnI GGCC 6 cut(s) 54, 352, 370, 481, 606, 1054
BsoBI CYCGRG 1 cut(s) 81
Bsp1286I GDGCHC 2 cut(s) 946, 1332
Bsp1407I TGTACA 1 cut(s) 732
Bsp143I GATC 6 cut(s) 69, 424, 600, 783, 1044, 1252
BspANI GGCC 6 cut(s) 54, 352, 370, 481, 606, 1054
BspCNI CTCAG 3 cut(s) 637, 841, 961
BspFNI CGCG 1 cut(s) 168
BspHI TCATGA 1 cut(s) 862
BspLI GGNNCC 5 cut(s) 103, 388, 399, 411, 945
BspPI GGATC 1 cut(s) 608
BspT107I GGYRCC 2 cut(s) 101, 409
BsrBI CCGCTC 2 cut(s) 227, 1057
BsrFI RCCGGY 1 cut(s) 1031
BsrGI TGTACA 1 cut(s) 732
BsrI ACTGG 3 cut(s) 17, 387, 1020
BssAI RCCGGY 1 cut(s) 1031
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 6 cut(s) 69, 424, 600, 783, 1044, 1252
BssNI GRCGYC 3 cut(s) 102, 222, 1139
BssSI CACGAG 1 cut(s) 374
Bst2BI CACGAG 1 cut(s) 374
Bst4CI ACNGT 1 cut(s) 998
Bst6I CTCTTC 3 cut(s) 893, 913, 1235
BstACI GRCGYC 3 cut(s) 102, 222, 1139
BstAUI TGTACA 1 cut(s) 732
BstBAI YACGTR 1 cut(s) 1050
BstDEI CTNAG 4 cut(s) 645, 807, 849, 948
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 6 cut(s) 114, 159, 195, 909, 944, 1318
BstFNI CGCG 1 cut(s) 168
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 2 cut(s) 104, 1031
BstKTI GATC 6 cut(s) 72, 427, 603, 786, 1047, 1255
BstMBI GATC 6 cut(s) 69, 424, 600, 783, 1044, 1252
BstMCI CGRYCG 1 cut(s) 371
BstMWI GCNNNNNNNGC 4 cut(s) 101, 418, 1265, 1274
BstSCI CCNGG 2 cut(s) 412, 606
BstUI CGCG 1 cut(s) 168
BstV1I GCAGC 1 cut(s) 646
BstV2I GAAGAC 2 cut(s) 79, 268
BstX2I RGATCY 1 cut(s) 1252
BstYI RGATCY 1 cut(s) 1252
BstZI CGGCCG 1 cut(s) 368
BsuRI GGCC 6 cut(s) 54, 352, 370, 481, 606, 1054
BtgI CCRYGG 1 cut(s) 97
BtgZI GCGATG 1 cut(s) 1233
BtrI CACGTC 1 cut(s) 202
BtsCI GGATG 6 cut(s) 114, 159, 195, 909, 944, 1318
BtsIMutI CAGTG 3 cut(s) 994, 1013, 1337
CciI TCATGA 1 cut(s) 862
CfoI GCGC 2 cut(s) 104, 1031
Cfr10I RCCGGY 1 cut(s) 1031
Cfr13I GGNCC 3 cut(s) 350, 479, 605
CseI GACGC 2 cut(s) 230, 1128
Csp6I GTAC 2 cut(s) 28, 733
CviAII CATG 4 cut(s) 244, 682, 791, 863
CviQI GTAC 2 cut(s) 28, 733
DdeI CTNAG 4 cut(s) 645, 807, 849, 948
DinI GGCGCC 1 cut(s) 103
DpnI GATC 6 cut(s) 71, 426, 602, 785, 1046, 1254
DpnII GATC 6 cut(s) 69, 424, 600, 783, 1044, 1252
DrdI GACNNNNNNGTC 2 cut(s) 272, 325
DseDI GACNNNNNNGTC 2 cut(s) 272, 325
EaeI YGGCCR 3 cut(s) 52, 368, 1052
EagI CGGCCG 1 cut(s) 368
Eam1104I CTCTTC 3 cut(s) 893, 913, 1235
EarI CTCTTC 3 cut(s) 893, 913, 1235
EciI GGCGGA 2 cut(s) 238, 1079
Ecl136II GAGCTC 1 cut(s) 1330
EclXI CGGCCG 1 cut(s) 368
Eco24I GRGCYC 2 cut(s) 946, 1332
Eco52I CGGCCG 1 cut(s) 368
Eco53kI GAGCTC 1 cut(s) 1330
Eco72I CACGTG 1 cut(s) 1050
Eco88I CYCGRG 1 cut(s) 81
EcoICRI GAGCTC 1 cut(s) 1330
EcoRI GAATTC 1 cut(s) 802
EcoT38I GRGCYC 2 cut(s) 946, 1332
EgeI GGCGCC 1 cut(s) 103
EheI GGCGCC 1 cut(s) 103
FaeI CATG 4 cut(s) 247, 685, 794, 866
FaqI GGGAC 2 cut(s) 641, 666
FatI CATG 4 cut(s) 243, 681, 790, 862
FauNDI CATATG 1 cut(s) 1300
FbaI TGATCA 1 cut(s) 1044
FblI GTMKAC 1 cut(s) 842
Fnu4HI GCNGC 8 cut(s) 49, 52, 93, 225, 252, 371, 660, 1055
FokI GGATG 6 cut(s) 101, 146, 182, 916, 951, 1325
FriOI GRGCYC 2 cut(s) 946, 1332
Fsp4HI GCNGC 8 cut(s) 49, 52, 93, 225, 252, 371, 660, 1055
FspBI CTAG 1 cut(s) 1354
GlaI GCGC 2 cut(s) 103, 1030
GluI GCNGC 8 cut(s) 49, 52, 93, 225, 252, 371, 660, 1055
GsaI CCCAGC 2 cut(s) 351, 451
GsuI CTGGAG 3 cut(s) 448, 983, 1037
HaeII RGCGCY 1 cut(s) 105
HaeIII GGCC 6 cut(s) 54, 352, 370, 481, 606, 1054
HapII CCGG 3 cut(s) 413, 608, 1032
HgaI GACGC 2 cut(s) 230, 1128
HhaI GCGC 2 cut(s) 104, 1031
Hin1I GRCGYC 3 cut(s) 102, 222, 1139
Hin1II CATG 4 cut(s) 247, 685, 794, 866
Hin6I GCGC 2 cut(s) 102, 1029
HinP1I GCGC 2 cut(s) 102, 1029
HindIII AAGCTT 1 cut(s) 748
HinfI GANTC 9 cut(s) 5, 84, 189, 392, 548, 707, 859, 913, 991
HpaII CCGG 3 cut(s) 413, 608, 1032
HphI GGTGA 5 cut(s) 184, 253, 294, 538, 1207
Hpy166II GTNNAC 4 cut(s) 111, 529, 733, 843
Hpy188III TCNNGA 7 cut(s) 64, 316, 465, 571, 713, 863, 1075
Hpy8I GTNNAC 4 cut(s) 111, 529, 733, 843
Hpy99I CGWCG 3 cut(s) 47, 224, 1144
HpyAV CCTTC 8 cut(s) 268, 568, 583, 1153, 1174, 1258, 1280, 1336
HpyCH4III ACNGT 1 cut(s) 998
HpyCH4IV ACGT 2 cut(s) 201, 1049
HpyCH4V TGCA 3 cut(s) 323, 621, 1304
HpyF10VI GCNNNNNNNGC 4 cut(s) 101, 418, 1265, 1274
HpyF3I CTNAG 4 cut(s) 645, 807, 849, 948
HpySE526I ACGT 2 cut(s) 201, 1049
Hsp92I GRCGYC 3 cut(s) 102, 222, 1139
Hsp92II CATG 4 cut(s) 247, 685, 794, 866
HspAI GCGC 2 cut(s) 102, 1029
KasI GGCGCC 1 cut(s) 101
Ksp22I TGATCA 1 cut(s) 1044
Kzo9I GATC 6 cut(s) 69, 424, 600, 783, 1044, 1252
LmnI GCTCC 7 cut(s) 232, 397, 456, 949, 964, 1066, 1125
Lsp1109I GCAGC 1 cut(s) 646
LweI GCATC 3 cut(s) 332, 948, 1303
MaeI CTAG 1 cut(s) 1354
MaeII ACGT 2 cut(s) 201, 1049
MaeIII GTNAC 2 cut(s) 992, 1335
MalI GATC 6 cut(s) 71, 426, 602, 785, 1046, 1254
MbiI CCGCTC 2 cut(s) 227, 1057
MboI GATC 6 cut(s) 69, 424, 600, 783, 1044, 1252
MflI RGATCY 1 cut(s) 1252
MhlI GDGCHC 2 cut(s) 946, 1332
MluCI AATT 8 cut(s) 154, 295, 434, 542, 578, 697, 802, 877
Mly113I GGCGCC 1 cut(s) 102
MlyI GAGTC 4 cut(s) 93, 557, 922, 1000
MmeI TCCRAC 3 cut(s) 159, 304, 684
MroXI GAANNNNTTC 1 cut(s) 533
MslI CAYNNNNRTG 2 cut(s) 242, 867
MspA1I CMGCKG 1 cut(s) 347
MspI CCGG 3 cut(s) 413, 608, 1032
MspR9I CCNGG 2 cut(s) 414, 608
MvnI CGCG 1 cut(s) 168
MwoI GCNNNNNNNGC 4 cut(s) 101, 418, 1265, 1274
NarI GGCGCC 1 cut(s) 102
NciI CCSGG 2 cut(s) 414, 608
NdeI CATATG 1 cut(s) 1300
NdeII GATC 6 cut(s) 69, 424, 600, 783, 1044, 1252
NlaIII CATG 4 cut(s) 247, 685, 794, 866
NlaIV GGNNCC 5 cut(s) 103, 388, 399, 411, 945
NmeAIII GCCGAG 1 cut(s) 1040
NmuCI GTSAC 2 cut(s) 992, 1335
PagI TCATGA 1 cut(s) 862
PdmI GAANNNNTTC 1 cut(s) 533
PfeI GAWTC 5 cut(s) 5, 189, 392, 707, 859
PkrI GCNGC 8 cut(s) 50, 53, 94, 226, 253, 372, 661, 1056
PleI GAGTC 4 cut(s) 92, 556, 921, 999
PluTI GGCGCC 1 cut(s) 105
PmaCI CACGTG 1 cut(s) 1050
PmlI CACGTG 1 cut(s) 1050
PpsI GAGTC 4 cut(s) 92, 556, 921, 999
Ppu21I YACGTR 1 cut(s) 1050
PsiI TTATAA 1 cut(s) 768
Psp124BI GAGCTC 1 cut(s) 1332
PspCI CACGTG 1 cut(s) 1050
PspFI CCCAGC 2 cut(s) 347, 447
PspN4I GGNNCC 5 cut(s) 103, 388, 399, 411, 945
PspPI GGNCC 3 cut(s) 350, 479, 605
PsuI RGATCY 1 cut(s) 1252
RsaI GTAC 2 cut(s) 29, 734
RsaNI GTAC 2 cut(s) 28, 733
RseI CAYNNNNRTG 2 cut(s) 242, 867
SacI GAGCTC 1 cut(s) 1332
SatI GCNGC 8 cut(s) 49, 52, 93, 225, 252, 371, 660, 1055
Sau3AI GATC 6 cut(s) 69, 424, 600, 783, 1044, 1252
Sau96I GGNCC 3 cut(s) 350, 479, 605
SchI GAGTC 4 cut(s) 93, 557, 922, 1000
ScrFI CCNGG 2 cut(s) 414, 608
SduI GDGCHC 2 cut(s) 946, 1332
SfaNI GCATC 3 cut(s) 332, 948, 1303
SfoI GGCGCC 1 cut(s) 103
SgrAI CRCCGGYG 1 cut(s) 1031
SmiMI CAYNNNNRTG 2 cut(s) 242, 867
SmlI CTYRAG 4 cut(s) 289, 711, 797, 1331
SmoI CTYRAG 4 cut(s) 289, 711, 797, 1331
Sse9I AATT 8 cut(s) 154, 295, 434, 542, 578, 697, 802, 877
SspDI GGCGCC 1 cut(s) 101
SspMI CTAG 1 cut(s) 1354
SstI GAGCTC 1 cut(s) 1332
StyD4I CCNGG 2 cut(s) 412, 606
TaaI ACNGT 1 cut(s) 998
TaiI ACGT 2 cut(s) 204, 1052
TaqI TCGA 8 cut(s) 72, 207, 332, 432, 551, 757, 916, 1076
TasI AATT 8 cut(s) 154, 295, 434, 542, 578, 697, 802, 877
TatI WGTACW 2 cut(s) 27, 732
TauI GCSGC 7 cut(s) 51, 54, 95, 227, 254, 373, 1057
TfiI GAWTC 5 cut(s) 5, 189, 392, 707, 859
TscAI CASTG 3 cut(s) 1001, 1020, 1344
TseFI GTSAC 2 cut(s) 992, 1335
TseI GCWGC 1 cut(s) 659
Tsp45I GTSAC 2 cut(s) 992, 1335
TspDTI ATGAA 3 cut(s) 555, 698, 879
TspGWI ACGGA 1 cut(s) 262
TspRI CASTG 3 cut(s) 1001, 1020, 1344
XapI RAATTY 1 cut(s) 802
XmiI GTMKAC 1 cut(s) 842
XmnI GAANNNNTTC 1 cut(s) 533
XspI CTAG 1 cut(s) 1354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.