Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0013909

Physical Location & Seq

Genomic Coordinates Forward (+)

59501821 .. 59506463

Gene Structure 4643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00209210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGATGGGCTCAAACTCAATCCAAATCCCAATCGCTTTGGCCTATCACACCTCCCCTCCTCCTTCTTCTTCTTCTCTTTCACATCTCTCCTCCTCCCTTCCTCTACTTCCTCGCTCGCCTCCTCCTCCCTCTCTACGACGTCGTTTCCACACTCTCCGCCTCGCAATCCGTCGCCGCTCTTCAATTCTCGCCTCCTCCTCCTCCGCGGCCGGCGTCACCAATTCCGCGCCGAGAAATGGAAACTACACCGTCAGCGATTTCATGACCACCAAAGAGCATTTACACGTCGTTAAACCCTCCACAACCGTCGACCAAGCATTGGATTTTCTGGTGGAGAAGAGAATTACCGGTTTTCCTGTGATTGATGATGACTGGAAGCTGGTTGGTGTTGTTTCGGATTATGACTTGTTAGCATTGGACTCCATATCAGGAAATATAGGAGGTGGTAGTCAACATGACACAAACTTATTTCCAGATGTGGACAGTTCTTGGAAGACATTCAATGAAATACAGAAATTGCTTAGCAAAACGAATGGAAAAGTTGTTGGCGACTTGATGACACCTGCTCCACTTGTTGTTCGTGAAACCACCAACCTAGAAGATGCTGCTAGGTTGTTGCTTGCAACAAAATATCGCCGACTGCCAGTTGTAGATAGTGACGGCAAGCTGGTTGGGATCATTACCAGGGGAAATGTTGTTAAAGCTGCCCTTCAGATAAAACGTGGTAGTCAAAAATTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0019725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

247

Amino Acids

26.75

Weight (kDa)

9.83

Isoelectric Point (pI)

50.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	84 - 138	5.9e-13	CBS domain
CBS	PF00571	182 - 236	2.3e-17	CBS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34120
fragaria_vesca	FvH4_2g05710 FvH4_2g05710
malus_domestica	MD05G1085200.v1.1
prunus_persica	Prupe.8G129500_v2.0.a1
pyrus_communis	pycom05g08450 pycom1609g00040
rosa_chinensis	RchiOBHm_Chr6g0256581
rosa_laevigata	RLG00000014753
rosa_multiflora	Rmu_sc0003012.1_g000012
rosa_roxburghii	Rroxscaffold_7G00209210
rosa_rugosa	Rorug05G0564700
rosa_samantha	Rh6AG082500 Rh6BG075200 Rh6CG071800 Rh6DG069000
rosa_wichuraiana	Rw6G007430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	571
AatII	GACGTC	1 cut(s)	142
Acc36I	ACCTGC	1 cut(s)	571
AccB7I	CCANNNNNTGG	1 cut(s)	319
AccBSI	CCGCTC	1 cut(s)	177
AccI	GTMKAC	1 cut(s)	309
AccII	CGCG	2 cut(s)	206, 227
AciI	CCGC	5 cut(s)	157, 175, 204, 206, 225
AclWI	GGATC	1 cut(s)	683
AcoI	YGGCCR	1 cut(s)	207
AcuI	CTGAAG	1 cut(s)	695
AcyI	GRCGYC	2 cut(s)	139, 213
AfiI	CCNNNNNNNGG	2 cut(s)	236, 319
AflIII	ACRYGT	1 cut(s)	283
AgeI	ACCGGT	1 cut(s)	347
AgsI	TTSAA	2 cut(s)	183, 502
AjiI	CACGTC	1 cut(s)	286
AjnI	CCWGG	1 cut(s)	683
AluBI	AGCT	4 cut(s)	379, 667, 704, 740
AluI	AGCT	4 cut(s)	379, 667, 704, 740
AlwI	GGATC	1 cut(s)	683
AoxI	GGCC	2 cut(s)	39, 207
ApeKI	GCWGC	2 cut(s)	605, 704
AsiGI	ACCGGT	1 cut(s)	347
Asp700I	GAANNNNTTC	1 cut(s)	497
AspLEI	GCGC	1 cut(s)	229
AsuHPI	GGTGA	1 cut(s)	208
BanII	GRGCYC	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	500
BbvI	GCAGC	2 cut(s)	592, 691
BceAI	ACGGC	1 cut(s)	676
BciT130I	CCWGG	1 cut(s)	685
BfaI	CTAG	2 cut(s)	596, 609
BfuAI	ACCTGC	1 cut(s)	571
BisI	GCNGC	4 cut(s)	175, 207, 606, 705
BlpI	GCTNAGC	1 cut(s)	521
BlsI	GCNGC	4 cut(s)	176, 208, 607, 706
Bme1390I	CCNGG	1 cut(s)	685
BmgBI	CACGTC	1 cut(s)	286
BmrFI	CCNGG	1 cut(s)	685
BmsI	GCATC	1 cut(s)	592
BpiI	GAAGAC	1 cut(s)	500
Bpu1102I	GCTNAGC	1 cut(s)	521
BsaHI	GRCGYC	2 cut(s)	139, 213
BsaJI	CCNNGG	2 cut(s)	204, 684
BsaWI	WCCGGW	1 cut(s)	347
BsaXI	ACNNNNNCTCC	4 cut(s)	40, 70, 550, 580
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 319
Bse118I	RCCGGY	2 cut(s)	209, 347
Bse1I	ACTGG	2 cut(s)	377, 644
BseBI	CCWGG	1 cut(s)	685
BseDI	CCNNGG	2 cut(s)	204, 684
BseLI	CCNNNNNNNGG	2 cut(s)	236, 319
BseNI	ACTGG	2 cut(s)	377, 644
BseRI	GAGGAG	8 cut(s)	48, 79, 82, 111, 114, 184, 187, 190
BseX3I	CGGCCG	1 cut(s)	207
BseXI	GCAGC	2 cut(s)	592, 691
Bsh1236I	CGCG	2 cut(s)	206, 227
Bsh1285I	CGRYCG	1 cut(s)	210
BshFI	GGCC	2 cut(s)	41, 209
BshTI	ACCGGT	1 cut(s)	347
BsiEI	CGRYCG	1 cut(s)	210
BsiSI	CCGG	2 cut(s)	210, 348
BslI	CCNNNNNNNGG	2 cut(s)	236, 319
BsnI	GGCC	2 cut(s)	41, 209
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	675
Bsp1720I	GCTNAGC	1 cut(s)	521
BspACI	CCGC	5 cut(s)	157, 175, 204, 206, 225
BspANI	GGCC	2 cut(s)	41, 209
BspFNI	CGCG	2 cut(s)	206, 227
BspHI	TCATGA	1 cut(s)	261
BspMI	ACCTGC	1 cut(s)	571
BspPI	GGATC	1 cut(s)	683
BspQI	GCTCTTC	1 cut(s)	184
BsrBI	CCGCTC	1 cut(s)	177
BsrFI	RCCGGY	2 cut(s)	209, 347
BsrI	ACTGG	2 cut(s)	377, 644
BssAI	RCCGGY	2 cut(s)	209, 347
BssECI	CCNNGG	2 cut(s)	204, 684
BssMI	GATC	1 cut(s)	675
BssNI	GRCGYC	2 cut(s)	139, 213
Bst2UI	CCWGG	1 cut(s)	685
Bst4CI	ACNGT	3 cut(s)	250, 307, 485
Bst6I	CTCTTC	2 cut(s)	184, 332
BstACI	GRCGYC	2 cut(s)	139, 213
BstC8I	GCNNGC	4 cut(s)	116, 211, 621, 665
BstDEI	CTNAG	2 cut(s)	521, 741
BstDSI	CCRYGG	1 cut(s)	204
BstFNI	CGCG	2 cut(s)	206, 227
BstHHI	GCGC	1 cut(s)	229
BstKTI	GATC	1 cut(s)	678
BstMBI	GATC	1 cut(s)	675
BstMCI	CGRYCG	1 cut(s)	210
BstNI	CCWGG	1 cut(s)	685
BstSCI	CCNGG	1 cut(s)	683
BstUI	CGCG	2 cut(s)	206, 227
BstV1I	GCAGC	2 cut(s)	592, 691
BstV2I	GAAGAC	1 cut(s)	500
BstZI	CGGCCG	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	41, 209
BtgI	CCRYGG	1 cut(s)	204
BtrI	CACGTC	1 cut(s)	286
BveI	ACCTGC	1 cut(s)	571
Cac8I	GCNNGC	4 cut(s)	116, 211, 621, 665
CciI	TCATGA	1 cut(s)	261
CfoI	GCGC	1 cut(s)	229
Cfr10I	RCCGGY	2 cut(s)	209, 347
Cfr42I	CCGCGG	1 cut(s)	207
CseI	GACGC	1 cut(s)	202
CspAI	ACCGGT	1 cut(s)	347
CviAII	CATG	2 cut(s)	262, 455
CviJI	RGCY	7 cut(s)	9, 41, 209, 379, 667, 704, 740
CviKI_1	RGCY	7 cut(s)	9, 41, 209, 379, 667, 704, 740
DdeI	CTNAG	2 cut(s)	521, 741
DpnI	GATC	1 cut(s)	677
DpnII	GATC	1 cut(s)	675
EaeI	YGGCCR	1 cut(s)	207
EagI	CGGCCG	1 cut(s)	207
Eam1104I	CTCTTC	2 cut(s)	184, 332
EarI	CTCTTC	2 cut(s)	184, 332
EciI	GGCGGA	1 cut(s)	146
EclXI	CGGCCG	1 cut(s)	207
Eco24I	GRGCYC	1 cut(s)	11
Eco52I	CGGCCG	1 cut(s)	207
Eco57I	CTGAAG	1 cut(s)	695
EcoRII	CCWGG	1 cut(s)	683
EcoT38I	GRGCYC	1 cut(s)	11
FaeI	CATG	2 cut(s)	265, 458
FaiI	YATR	5 cut(s)	263, 402, 425, 437, 456
FalI	AAGNNNNNCTT	2 cut(s)	693, 725
FatI	CATG	2 cut(s)	261, 454
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	4 cut(s)	175, 207, 606, 705
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	4 cut(s)	175, 207, 606, 705
FspBI	CTAG	2 cut(s)	596, 609
GlaI	GCGC	1 cut(s)	228
GluI	GCNGC	4 cut(s)	175, 207, 606, 705
HaeIII	GGCC	2 cut(s)	41, 209
HapII	CCGG	2 cut(s)	210, 348
HgaI	GACGC	1 cut(s)	202
HhaI	GCGC	1 cut(s)	229
Hin1I	GRCGYC	2 cut(s)	139, 213
Hin1II	CATG	2 cut(s)	265, 458
Hin6I	GCGC	1 cut(s)	227
HinP1I	GCGC	1 cut(s)	227
HincII	GTYRAC	2 cut(s)	310, 452
HindII	GTYRAC	2 cut(s)	310, 452
HinfI	GANTC	1 cut(s)	419
HpaII	CCGG	2 cut(s)	210, 348
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	3 cut(s)	310, 452, 481
Hpy188I	TCNGA	2 cut(s)	397, 714
Hpy188III	TCNNGA	4 cut(s)	262, 429, 473, 581
Hpy8I	GTNNAC	3 cut(s)	310, 452, 481
Hpy99I	CGWCG	5 cut(s)	141, 144, 174, 290, 311
HpyAV	CCTTC	3 cut(s)	72, 107, 719
HpyCH4III	ACNGT	3 cut(s)	250, 307, 485
HpyCH4IV	ACGT	3 cut(s)	139, 285, 721
HpyCH4V	TGCA	1 cut(s)	623
HpyF3I	CTNAG	2 cut(s)	521, 741
HpySE526I	ACGT	3 cut(s)	139, 285, 721
Hsp92I	GRCGYC	2 cut(s)	139, 213
Hsp92II	CATG	2 cut(s)	265, 458
HspAI	GCGC	1 cut(s)	227
KroI	GCCGGC	1 cut(s)	209
KroNI	GCCGGC	1 cut(s)	211
KspI	CCGCGG	1 cut(s)	207
Kzo9I	GATC	1 cut(s)	675
LguI	GCTCTTC	1 cut(s)	184
LmnI	GCTCC	1 cut(s)	571
Lsp1109I	GCAGC	2 cut(s)	592, 691
LweI	GCATC	1 cut(s)	592
MaeI	CTAG	2 cut(s)	596, 609
MaeII	ACGT	3 cut(s)	139, 285, 721
MaeIII	GTNAC	2 cut(s)	214, 656
MalI	GATC	1 cut(s)	677
MbiI	CCGCTC	1 cut(s)	177
MboI	GATC	1 cut(s)	675
MboII	GAAGA	7 cut(s)	57, 60, 63, 171, 349, 505, 611
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	5 cut(s)	183, 220, 342, 515, 734
MlyI	GAGTC	1 cut(s)	413
MroNI	GCCGGC	1 cut(s)	209
MroXI	GAANNNNTTC	1 cut(s)	497
MseI	TTAA	2 cut(s)	291, 699
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	2 cut(s)	210, 348
MspR9I	CCNGG	1 cut(s)	685
MvaI	CCWGG	1 cut(s)	685
MvnI	CGCG	2 cut(s)	206, 227
NaeI	GCCGGC	1 cut(s)	211
NdeII	GATC	1 cut(s)	675
NgoMIV	GCCGGC	1 cut(s)	209
NlaIII	CATG	2 cut(s)	265, 458
NmeAIII	GCCGAG	1 cut(s)	255
NmuCI	GTSAC	2 cut(s)	214, 656
PagI	TCATGA	1 cut(s)	261
PaqCI	CACCTGC	1 cut(s)	571
PciSI	GCTCTTC	1 cut(s)	184
PdiI	GCCGGC	1 cut(s)	211
PdmI	GAANNNNTTC	1 cut(s)	497
PflMI	CCANNNNNTGG	1 cut(s)	319
PinAI	ACCGGT	1 cut(s)	347
PkrI	GCNGC	4 cut(s)	176, 208, 607, 706
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
Psp6I	CCWGG	1 cut(s)	683
PspGI	CCWGG	1 cut(s)	683
SacII	CCGCGG	1 cut(s)	207
SalI	GTCGAC	1 cut(s)	308
SapI	GCTCTTC	1 cut(s)	184
SaqAI	TTAA	2 cut(s)	291, 699
SatI	GCNGC	4 cut(s)	175, 207, 606, 705
Sau3AI	GATC	1 cut(s)	675
SchI	GAGTC	1 cut(s)	413
ScrFI	CCNGG	1 cut(s)	685
SduI	GDGCHC	1 cut(s)	11
SfaNI	GCATC	1 cut(s)	592
Sfr303I	CCGCGG	1 cut(s)	207
SgrBI	CCGCGG	1 cut(s)	207
Sse9I	AATT	5 cut(s)	183, 220, 342, 515, 734
SsiI	CCGC	5 cut(s)	157, 175, 204, 206, 225
SspMI	CTAG	2 cut(s)	596, 609
StyD4I	CCNGG	1 cut(s)	683
TaaI	ACNGT	3 cut(s)	250, 307, 485
TaiI	ACGT	3 cut(s)	142, 288, 724
TaqI	TCGA	1 cut(s)	309
TasI	AATT	5 cut(s)	183, 220, 342, 515, 734
TauI	GCSGC	2 cut(s)	177, 209
Tru1I	TTAA	2 cut(s)	291, 699
Tru9I	TTAA	2 cut(s)	291, 699
TseFI	GTSAC	2 cut(s)	214, 656
TseI	GCWGC	2 cut(s)	605, 704
Tsp45I	GTSAC	2 cut(s)	214, 656
TspDTI	ATGAA	2 cut(s)	250, 519
TspGWI	ACGGA	1 cut(s)	158
Van91I	CCANNNNNTGG	1 cut(s)	319
XmiI	GTMKAC	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	497
XspI	CTAG	2 cut(s)	596, 609
ZraI	GACGTC	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.