Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0013909

Physical Location & Seq

Genomic Coordinates Reverse (-)

12400806 .. 12405122

Gene Structure 4317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG082500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGATGGGCTCAAACTCAATCCAAATCCCAATCGCTCTGGCCTATCACACCTCCCCTCCTTCTTCTCTTTCACCTCTCACCTTCTCCCTTCCTCTACTTCCTCGCTCGCCTTTACCTCCCTCTCTACGACGTCGTTTCCAGACTCTCCGCCTCGCAATCCATCGCCGCTCTTCAATTCTCGCCTCCTCCTCCTCCGCGGCCGGCGTCACGAATTCCGCGCCGAGAAATGGAAACTACACCGTCAGCGATTTCATGACCACCAAAGAGCATTTACACGTCGTTAAGCCCTCCACAACCGTCGACCAAGCATTGGATTTTCTGGTGGAGAAGAGAATTACCGGATTTCCTGTGATTGATGATGACTGGAAGCTGGTTGGTGTTGTTTCGGATTATGACTTGTTAGCATTGGACTCCATATCAGGAAATATAGGAGGTGGTAGTCAACATGACACAAACTTATTTCCAGATGTAGACAGTTCTTGGAAGACATTCAATGAAATACAGAAATTGCTTAGCAAAACGAATGGAAAAGTTGTTGGCGACTTGATGACACCTGCTCCACTTGTTGTTCGTGAAACCACCAACCTAGAAGATGCTGCTAGGTTGTTGCTTGCGACAAAATATCGCCGACTGCCAGTTGTAGATAGTGATGGCAAACTGGTTGGGATCATTACAAGGGGAAATGTTGTTAAAGCTGCCCTTCAGATAAAACGTGGTAGTAAAAAATTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0019725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

244

Amino Acids

26.5

Weight (kDa)

9.79

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	81 - 135	5.8e-13	CBS domain
CBS	PF00571	179 - 233	2.3e-17	CBS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34120
fragaria_vesca	FvH4_2g05710 FvH4_2g05710
malus_domestica	MD05G1085200.v1.1
prunus_persica	Prupe.8G129500_v2.0.a1
pyrus_communis	pycom05g08450 pycom1609g00040
rosa_chinensis	RchiOBHm_Chr6g0256581
rosa_laevigata	RLG00000014753
rosa_multiflora	Rmu_sc0003012.1_g000012
rosa_roxburghii	Rroxscaffold_7G00209210
rosa_rugosa	Rorug05G0564700
rosa_samantha	Rh6AG082500 Rh6BG075200 Rh6CG071800 Rh6DG069000
rosa_wichuraiana	Rw6G007430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	562
AatII	GACGTC	1 cut(s)	133
Acc36I	ACCTGC	1 cut(s)	562
AccB7I	CCANNNNNTGG	1 cut(s)	310
AccBSI	CCGCTC	1 cut(s)	168
AccI	GTMKAC	2 cut(s)	300, 471
AccII	CGCG	2 cut(s)	197, 218
AciI	CCGC	5 cut(s)	148, 166, 195, 197, 216
AclWI	GGATC	1 cut(s)	674
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	686
AcyI	GRCGYC	2 cut(s)	130, 204
AfiI	CCNNNNNNNGG	2 cut(s)	227, 310
AflIII	ACRYGT	1 cut(s)	274
AgsI	TTSAA	2 cut(s)	174, 493
AjiI	CACGTC	1 cut(s)	277
AluBI	AGCT	3 cut(s)	370, 695, 731
AluI	AGCT	3 cut(s)	370, 695, 731
AlwI	GGATC	1 cut(s)	674
AoxI	GGCC	2 cut(s)	39, 198
ApeKI	GCWGC	2 cut(s)	596, 695
ApoI	RAATTY	1 cut(s)	211
Asp700I	GAANNNNTTC	1 cut(s)	488
AspLEI	GCGC	1 cut(s)	220
AsuHPI	GGTGA	2 cut(s)	63, 70
BanII	GRGCYC	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	491
BbvI	GCAGC	2 cut(s)	583, 682
BccI	CCATC	2 cut(s)	168, 644
BfaI	CTAG	2 cut(s)	587, 600
BfuAI	ACCTGC	1 cut(s)	562
BisI	GCNGC	4 cut(s)	166, 198, 597, 696
BlpI	GCTNAGC	1 cut(s)	512
BlsI	GCNGC	4 cut(s)	167, 199, 598, 697
BmgBI	CACGTC	1 cut(s)	277
BmsI	GCATC	1 cut(s)	583
BpiI	GAAGAC	1 cut(s)	491
Bpu1102I	GCTNAGC	1 cut(s)	512
BsaHI	GRCGYC	2 cut(s)	130, 204
BsaJI	CCNNGG	1 cut(s)	195
BsaWI	WCCGGW	1 cut(s)	338
BsaXI	ACNNNNNCTCC	4 cut(s)	40, 70, 541, 571
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 310
Bse118I	RCCGGY	1 cut(s)	200
Bse1I	ACTGG	3 cut(s)	368, 635, 663
BseDI	CCNNGG	1 cut(s)	195
BseLI	CCNNNNNNNGG	2 cut(s)	227, 310
BseNI	ACTGG	3 cut(s)	368, 635, 663
BseRI	GAGGAG	3 cut(s)	175, 178, 181
BseX3I	CGGCCG	1 cut(s)	198
BseXI	GCAGC	2 cut(s)	583, 682
Bsh1236I	CGCG	2 cut(s)	197, 218
Bsh1285I	CGRYCG	1 cut(s)	201
BshFI	GGCC	2 cut(s)	41, 200
BsiEI	CGRYCG	1 cut(s)	201
BsiSI	CCGG	2 cut(s)	201, 339
BslI	CCNNNNNNNGG	2 cut(s)	227, 310
BsnI	GGCC	2 cut(s)	41, 200
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	666
Bsp1720I	GCTNAGC	1 cut(s)	512
BspACI	CCGC	5 cut(s)	148, 166, 195, 197, 216
BspANI	GGCC	2 cut(s)	41, 200
BspFNI	CGCG	2 cut(s)	197, 218
BspHI	TCATGA	1 cut(s)	252
BspMI	ACCTGC	1 cut(s)	562
BspPI	GGATC	1 cut(s)	674
BspQI	GCTCTTC	1 cut(s)	175
BsrBI	CCGCTC	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	200
BsrI	ACTGG	3 cut(s)	368, 635, 663
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	1 cut(s)	666
BssNI	GRCGYC	2 cut(s)	130, 204
Bst4CI	ACNGT	3 cut(s)	241, 298, 476
Bst6I	CTCTTC	2 cut(s)	175, 323
BstACI	GRCGYC	2 cut(s)	130, 204
BstC8I	GCNNGC	3 cut(s)	107, 202, 612
BstDEI	CTNAG	2 cut(s)	512, 732
BstDSI	CCRYGG	1 cut(s)	195
BstFNI	CGCG	2 cut(s)	197, 218
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	1 cut(s)	669
BstMBI	GATC	1 cut(s)	666
BstMCI	CGRYCG	1 cut(s)	201
BstUI	CGCG	2 cut(s)	197, 218
BstV1I	GCAGC	2 cut(s)	583, 682
BstV2I	GAAGAC	1 cut(s)	491
BstZI	CGGCCG	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	41, 200
BtgI	CCRYGG	1 cut(s)	195
BtgZI	GCGATG	1 cut(s)	146
BtrI	CACGTC	1 cut(s)	277
BveI	ACCTGC	1 cut(s)	562
Cac8I	GCNNGC	3 cut(s)	107, 202, 612
CciI	TCATGA	1 cut(s)	252
CfoI	GCGC	1 cut(s)	220
Cfr10I	RCCGGY	1 cut(s)	200
Cfr42I	CCGCGG	1 cut(s)	198
CseI	GACGC	1 cut(s)	193
CviAII	CATG	2 cut(s)	253, 446
CviJI	RGCY	7 cut(s)	9, 41, 200, 286, 370, 695, 731
CviKI_1	RGCY	7 cut(s)	9, 41, 200, 286, 370, 695, 731
DdeI	CTNAG	2 cut(s)	512, 732
DpnI	GATC	1 cut(s)	668
DpnII	GATC	1 cut(s)	666
EaeI	YGGCCR	1 cut(s)	198
EagI	CGGCCG	1 cut(s)	198
Eam1104I	CTCTTC	2 cut(s)	175, 323
EarI	CTCTTC	2 cut(s)	175, 323
EciI	GGCGGA	1 cut(s)	137
EclXI	CGGCCG	1 cut(s)	198
Eco24I	GRGCYC	1 cut(s)	11
Eco52I	CGGCCG	1 cut(s)	198
Eco57I	CTGAAG	1 cut(s)	686
EcoRI	GAATTC	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	11
FaeI	CATG	2 cut(s)	256, 449
FaiI	YATR	5 cut(s)	254, 393, 416, 428, 447
FalI	AAGNNNNNCTT	2 cut(s)	684, 716
FatI	CATG	2 cut(s)	252, 445
FblI	GTMKAC	2 cut(s)	300, 471
Fnu4HI	GCNGC	4 cut(s)	166, 198, 597, 696
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	4 cut(s)	166, 198, 597, 696
FspBI	CTAG	2 cut(s)	587, 600
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	4 cut(s)	166, 198, 597, 696
HaeIII	GGCC	2 cut(s)	41, 200
HapII	CCGG	2 cut(s)	201, 339
HgaI	GACGC	1 cut(s)	193
HhaI	GCGC	1 cut(s)	220
Hin1I	GRCGYC	2 cut(s)	130, 204
Hin1II	CATG	2 cut(s)	256, 449
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HincII	GTYRAC	2 cut(s)	301, 443
HindII	GTYRAC	2 cut(s)	301, 443
HinfI	GANTC	2 cut(s)	142, 410
HpaII	CCGG	2 cut(s)	201, 339
HphI	GGTGA	2 cut(s)	63, 70
Hpy166II	GTNNAC	3 cut(s)	301, 443, 472
Hpy188I	TCNGA	2 cut(s)	388, 705
Hpy188III	TCNNGA	6 cut(s)	139, 208, 253, 420, 464, 572
Hpy8I	GTNNAC	3 cut(s)	301, 443, 472
Hpy99I	CGWCG	4 cut(s)	132, 135, 281, 302
HpyAV	CCTTC	4 cut(s)	69, 91, 98, 710
HpyCH4III	ACNGT	3 cut(s)	241, 298, 476
HpyCH4IV	ACGT	3 cut(s)	130, 276, 712
HpyF3I	CTNAG	2 cut(s)	512, 732
HpySE526I	ACGT	3 cut(s)	130, 276, 712
Hsp92I	GRCGYC	2 cut(s)	130, 204
Hsp92II	CATG	2 cut(s)	256, 449
HspAI	GCGC	1 cut(s)	218
KroI	GCCGGC	1 cut(s)	200
KroNI	GCCGGC	1 cut(s)	202
KspI	CCGCGG	1 cut(s)	198
Kzo9I	GATC	1 cut(s)	666
LguI	GCTCTTC	1 cut(s)	175
LmnI	GCTCC	1 cut(s)	562
Lsp1109I	GCAGC	2 cut(s)	583, 682
LweI	GCATC	1 cut(s)	583
MaeI	CTAG	2 cut(s)	587, 600
MaeII	ACGT	3 cut(s)	130, 276, 712
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	1 cut(s)	668
MbiI	CCGCTC	1 cut(s)	168
MboI	GATC	1 cut(s)	666
MboII	GAAGA	5 cut(s)	54, 162, 340, 496, 602
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	5 cut(s)	174, 211, 333, 506, 725
MlyI	GAGTC	2 cut(s)	136, 404
MroNI	GCCGGC	1 cut(s)	200
MroXI	GAANNNNTTC	1 cut(s)	488
MseI	TTAA	2 cut(s)	282, 690
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	2 cut(s)	201, 339
MvnI	CGCG	2 cut(s)	197, 218
NaeI	GCCGGC	1 cut(s)	202
NdeII	GATC	1 cut(s)	666
NgoMIV	GCCGGC	1 cut(s)	200
NlaIII	CATG	2 cut(s)	256, 449
NmeAIII	GCCGAG	1 cut(s)	246
NmuCI	GTSAC	1 cut(s)	205
PagI	TCATGA	1 cut(s)	252
PaqCI	CACCTGC	1 cut(s)	562
PciSI	GCTCTTC	1 cut(s)	175
PdiI	GCCGGC	1 cut(s)	202
PdmI	GAANNNNTTC	1 cut(s)	488
PflMI	CCANNNNNTGG	1 cut(s)	310
PkrI	GCNGC	4 cut(s)	167, 199, 598, 697
PleI	GAGTC	2 cut(s)	136, 404
PpsI	GAGTC	2 cut(s)	136, 404
SacII	CCGCGG	1 cut(s)	198
SalI	GTCGAC	1 cut(s)	299
SapI	GCTCTTC	1 cut(s)	175
SaqAI	TTAA	2 cut(s)	282, 690
SatI	GCNGC	4 cut(s)	166, 198, 597, 696
Sau3AI	GATC	1 cut(s)	666
SchI	GAGTC	2 cut(s)	136, 404
SduI	GDGCHC	1 cut(s)	11
SfaNI	GCATC	1 cut(s)	583
Sfr303I	CCGCGG	1 cut(s)	198
SgrBI	CCGCGG	1 cut(s)	198
Sse9I	AATT	5 cut(s)	174, 211, 333, 506, 725
SsiI	CCGC	5 cut(s)	148, 166, 195, 197, 216
SspMI	CTAG	2 cut(s)	587, 600
TaaI	ACNGT	3 cut(s)	241, 298, 476
TaiI	ACGT	3 cut(s)	133, 279, 715
TaqI	TCGA	1 cut(s)	300
TasI	AATT	5 cut(s)	174, 211, 333, 506, 725
TauI	GCSGC	2 cut(s)	168, 200
Tru1I	TTAA	2 cut(s)	282, 690
Tru9I	TTAA	2 cut(s)	282, 690
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	2 cut(s)	596, 695
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	2 cut(s)	241, 510
Van91I	CCANNNNNTGG	1 cut(s)	310
XapI	RAATTY	1 cut(s)	211
XmiI	GTMKAC	2 cut(s)	300, 471
XmnI	GAANNNNTTC	1 cut(s)	488
XspI	CTAG	2 cut(s)	587, 600
ZraI	GACGTC	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.