pycom05g08450

CBS domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0013909
Physical Location & Seq
Forward (+)
11048427 .. 11052714
4288 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g08450.3

Sequence Viewer

Length: 702 bp
ATGGTGGGCTCAATCTCAATCCCTACCCCAATCGCTTTCCCCAATTCCACTTCGCTCTCTTCTCCTTCAATCCTTCCACTCCGTCGATTCCCTCTCCTCTCCCTCTGCAACCGACGCCGCCGCCTCCAATTCCGGCCCCTGGTTCTCGTTTCCTCTGCCGCGGGTGTCGCCGCCAGTTCCGTCCCCAGAAATGGGTCCTACACCGTCGGCGACTTCATGACCACCAGGGAGTATCTGCACGTCGTCAAGCCCACCACCACCGTCGACCAAGCATTGGATGCTCTTGTGGAGAAGAGAATCACCGGTTTTCCTGTGATTGACGATGACTGGAAACTCGTTGGTGTTGTTTCAGATTACGACTTGTTAGCGTTGGATTCCATATCCGGAAATATAAAAGGTGGTGGTCAAAGTGACACAAACTTGTTTCCAGATGTTGATAGTTCTTGGAAAACTTTCAATGAGATACAGAAACTGCTTAGCAAGACCAATGGAAAAGTTGTTGGTGACTTGATGACACCTGCTCCGCTTGTTGTTCGTGAAACCACCAACCTGGGAGATGCTGCTAGGTTGTTGCTTGAAACAAAATATCGCCGACTGCCAGTTGTAGATAGTGAAGGCAAGCTGGTTGGGATCATTACGAGGGGGAATGTTGTTAAAGCTGCCCTGCAGATAAAACGTGCTAGTGAAAATAAGCTTAGTTGA

Protein Analysis

234

Amino Acids

25.29

Weight (kDa)

9.63

Isoelectric Point (pI)

41.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013909)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34120
fragaria_vesca FvH4_2g05710 FvH4_2g05710
malus_domestica MD05G1085200.v1.1
prunus_persica Prupe.8G129500_v2.0.a1
pyrus_communis pycom05g08450 pycom1609g00040
rosa_chinensis RchiOBHm_Chr6g0256581
rosa_laevigata RLG00000014753
rosa_multiflora Rmu_sc0003012.1_g000012
rosa_roxburghii Rroxscaffold_7G00209210
rosa_rugosa Rorug05G0564700
rosa_samantha Rh6AG082500 Rh6BG075200 Rh6CG071800 Rh6DG069000
rosa_wichuraiana Rw6G007430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 526
Acc36I ACCTGC 1 cut(s) 526
AccB7I CCANNNNNTGG 1 cut(s) 274
AccI GTMKAC 1 cut(s) 264
AccII CGCG 1 cut(s) 161
AccIII TCCGGA 1 cut(s) 383
AciI CCGC 6 cut(s) 118, 121, 159, 161, 171, 524
AclWI GGATC 1 cut(s) 638
AcyI GRCGYC 1 cut(s) 115
AfiI CCNNNNNNNGG 4 cut(s) 139, 191, 192, 274
AgeI ACCGGT 1 cut(s) 302
AgsI TTSAA 3 cut(s) 69, 457, 578
AjiI CACGTC 1 cut(s) 241
AjnI CCWGG 3 cut(s) 138, 224, 549
AluBI AGCT 3 cut(s) 622, 659, 694
AluI AGCT 3 cut(s) 622, 659, 694
AlwI GGATC 1 cut(s) 638
AlwNI CAGNNNCTG 1 cut(s) 472
Aor13HI TCCGGA 1 cut(s) 383
AoxI GGCC 1 cut(s) 134
ApeKI GCWGC 2 cut(s) 560, 659
AsiGI ACCGGT 1 cut(s) 302
Asp700I GAANNNNTTC 1 cut(s) 452
AspS9I GGNCC 2 cut(s) 135, 195
AsuHPI GGTGA 2 cut(s) 292, 515
AvaII GGWCC 1 cut(s) 195
BanII GRGCYC 1 cut(s) 11
BbvI GCAGC 2 cut(s) 547, 646
BciT130I CCWGG 3 cut(s) 140, 226, 551
BfaI CTAG 2 cut(s) 564, 681
BfmI CTRYAG 1 cut(s) 665
BfuAI ACCTGC 1 cut(s) 526
BisI GCNGC 6 cut(s) 118, 121, 159, 171, 561, 660
BlpI GCTNAGC 1 cut(s) 476
BlsI GCNGC 6 cut(s) 119, 122, 160, 172, 562, 661
Bme1390I CCNGG 3 cut(s) 140, 226, 551
Bme18I GGWCC 1 cut(s) 195
BmgBI CACGTC 1 cut(s) 241
BmgT120I GGNCC 2 cut(s) 135, 195
BmiI GGNNCC 2 cut(s) 137, 196
BmrFI CCNGG 3 cut(s) 140, 226, 551
BmsI GCATC 2 cut(s) 268, 547
Bpu1102I GCTNAGC 1 cut(s) 476
BsaHI GRCGYC 1 cut(s) 115
BsaJI CCNNGG 4 cut(s) 138, 159, 225, 550
BsaWI WCCGGW 2 cut(s) 302, 383
BsaXI ACNNNNNCTCC 2 cut(s) 505, 535
Bsc4I CCNNNNNNNGG 4 cut(s) 139, 191, 192, 274
Bse118I RCCGGY 1 cut(s) 302
Bse1I ACTGG 3 cut(s) 174, 332, 599
BseAI TCCGGA 1 cut(s) 383
BseBI CCWGG 3 cut(s) 140, 226, 551
BseDI CCNNGG 4 cut(s) 138, 159, 225, 550
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 4 cut(s) 139, 191, 192, 274
BseNI ACTGG 3 cut(s) 174, 332, 599
BseRI GAGGAG 1 cut(s) 86
BseXI GCAGC 2 cut(s) 547, 646
BsgI GTGCAG 1 cut(s) 221
Bsh1236I CGCG 1 cut(s) 161
BshFI GGCC 1 cut(s) 136
BshTI ACCGGT 1 cut(s) 302
BsiSI CCGG 3 cut(s) 133, 303, 384
BslFI GGGAC 1 cut(s) 167
BslI CCNNNNNNNGG 4 cut(s) 139, 191, 192, 274
BsmFI GGGAC 1 cut(s) 167
BsnI GGCC 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 11
Bsp13I TCCGGA 1 cut(s) 383
Bsp143I GATC 1 cut(s) 630
Bsp1720I GCTNAGC 1 cut(s) 476
BspACI CCGC 6 cut(s) 118, 121, 159, 161, 171, 524
BspANI GGCC 1 cut(s) 136
BspEI TCCGGA 1 cut(s) 383
BspFNI CGCG 1 cut(s) 161
BspHI TCATGA 1 cut(s) 216
BspLI GGNNCC 2 cut(s) 137, 196
BspMAI CTGCAG 1 cut(s) 669
BspMI ACCTGC 1 cut(s) 526
BspPI GGATC 1 cut(s) 638
BsrFI RCCGGY 1 cut(s) 302
BsrI ACTGG 3 cut(s) 174, 332, 599
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 4 cut(s) 138, 159, 225, 550
BssMI GATC 1 cut(s) 630
BssNI GRCGYC 1 cut(s) 115
Bst2UI CCWGG 3 cut(s) 140, 226, 551
Bst4CI ACNGT 2 cut(s) 205, 262
Bst6I CTCTTC 2 cut(s) 64, 287
BstACI GRCGYC 1 cut(s) 115
BstAPI GCANNNNNTGC 1 cut(s) 278
BstC8I GCNNGC 1 cut(s) 620
BstDEI CTNAG 2 cut(s) 476, 695
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 1 cut(s) 283
BstFNI CGCG 1 cut(s) 161
BstKTI GATC 1 cut(s) 633
BstMBI GATC 1 cut(s) 630
BstMWI GCNNNNNNNGC 3 cut(s) 114, 167, 278
BstNI CCWGG 3 cut(s) 140, 226, 551
BstSCI CCNGG 3 cut(s) 138, 224, 549
BstSFI CTRYAG 1 cut(s) 665
BstUI CGCG 1 cut(s) 161
BstV1I GCAGC 2 cut(s) 547, 646
BstXI CCANNNNNNTGG 1 cut(s) 550
BsuRI GGCC 1 cut(s) 136
BtgI CCRYGG 1 cut(s) 159
BtrI CACGTC 1 cut(s) 241
BtsCI GGATG 1 cut(s) 283
BveI ACCTGC 1 cut(s) 526
Cac8I GCNNGC 1 cut(s) 620
CaiI CAGNNNCTG 1 cut(s) 472
CciI TCATGA 1 cut(s) 216
Cfr10I RCCGGY 1 cut(s) 302
Cfr13I GGNCC 2 cut(s) 135, 195
Cfr42I CCGCGG 1 cut(s) 162
CseI GACGC 1 cut(s) 123
CspAI ACCGGT 1 cut(s) 302
CviAII CATG 1 cut(s) 217
CviJI RGCY 6 cut(s) 9, 136, 250, 622, 659, 694
CviKI_1 RGCY 6 cut(s) 9, 136, 250, 622, 659, 694
DdeI CTNAG 2 cut(s) 476, 695
DpnI GATC 1 cut(s) 632
DpnII GATC 1 cut(s) 630
Eam1104I CTCTTC 2 cut(s) 64, 287
EarI CTCTTC 2 cut(s) 64, 287
Eco24I GRGCYC 1 cut(s) 11
Eco47I GGWCC 1 cut(s) 195
EcoO109I RGGNCCY 1 cut(s) 195
EcoRII CCWGG 3 cut(s) 138, 224, 549
EcoT38I GRGCYC 1 cut(s) 11
FaeI CATG 1 cut(s) 220
FaiI YATR 3 cut(s) 218, 380, 392
FaqI GGGAC 1 cut(s) 167
FatI CATG 1 cut(s) 216
FauI CCCGC 1 cut(s) 154
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 6 cut(s) 118, 121, 159, 171, 561, 660
FokI GGATG 1 cut(s) 290
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 6 cut(s) 118, 121, 159, 171, 561, 660
FspBI CTAG 2 cut(s) 564, 681
GluI GCNGC 6 cut(s) 118, 121, 159, 171, 561, 660
HaeIII GGCC 1 cut(s) 136
HapII CCGG 3 cut(s) 133, 303, 384
HgaI GACGC 1 cut(s) 123
Hin1I GRCGYC 1 cut(s) 115
Hin1II CATG 1 cut(s) 220
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HindIII AAGCTT 1 cut(s) 692
HinfI GANTC 3 cut(s) 87, 297, 374
HpaII CCGG 3 cut(s) 133, 303, 384
HphI GGTGA 2 cut(s) 292, 515
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 1 cut(s) 352
Hpy188III TCNNGA 4 cut(s) 217, 384, 428, 536
Hpy8I GTNNAC 1 cut(s) 265
Hpy99I CGWCG 5 cut(s) 87, 117, 209, 245, 266
HpyAV CCTTC 3 cut(s) 75, 83, 608
HpyCH4III ACNGT 2 cut(s) 205, 262
HpyCH4IV ACGT 2 cut(s) 240, 676
HpyCH4V TGCA 3 cut(s) 108, 238, 667
HpyF10VI GCNNNNNNNGC 3 cut(s) 114, 167, 278
HpyF3I CTNAG 2 cut(s) 476, 695
HpySE526I ACGT 2 cut(s) 240, 676
Hsp92I GRCGYC 1 cut(s) 115
Hsp92II CATG 1 cut(s) 220
Kpn2I TCCGGA 1 cut(s) 383
KspI CCGCGG 1 cut(s) 162
Kzo9I GATC 1 cut(s) 630
LmnI GCTCC 1 cut(s) 526
Lsp1109I GCAGC 2 cut(s) 547, 646
LweI GCATC 2 cut(s) 268, 547
MaeI CTAG 2 cut(s) 564, 681
MaeII ACGT 2 cut(s) 240, 676
MaeIII GTNAC 2 cut(s) 410, 503
MalI GATC 1 cut(s) 632
MboI GATC 1 cut(s) 630
MboII GAAGA 2 cut(s) 51, 304
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 2 cut(s) 43, 128
MmeI TCCRAC 1 cut(s) 351
MnlI CCTC 6 cut(s) 102, 107, 113, 134, 163, 633
MroI TCCGGA 1 cut(s) 383
MroXI GAANNNNTTC 1 cut(s) 452
MseI TTAA 1 cut(s) 654
MspA1I CMGCKG 1 cut(s) 161
MspI CCGG 3 cut(s) 133, 303, 384
MspR9I CCNGG 3 cut(s) 140, 226, 551
MvaI CCWGG 3 cut(s) 140, 226, 551
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 3 cut(s) 114, 167, 278
NdeII GATC 1 cut(s) 630
NlaIII CATG 1 cut(s) 220
NlaIV GGNNCC 2 cut(s) 137, 196
NmuCI GTSAC 2 cut(s) 410, 503
PagI TCATGA 1 cut(s) 216
PaqCI CACCTGC 1 cut(s) 526
PdmI GAANNNNTTC 1 cut(s) 452
PfeI GAWTC 3 cut(s) 87, 297, 374
PflMI CCANNNNNTGG 1 cut(s) 274
PinAI ACCGGT 1 cut(s) 302
PkrI GCNGC 6 cut(s) 119, 122, 160, 172, 562, 661
PpuMI RGGWCCY 1 cut(s) 195
Psp5II RGGWCCY 1 cut(s) 195
Psp6I CCWGG 3 cut(s) 138, 224, 549
PspGI CCWGG 3 cut(s) 138, 224, 549
PspN4I GGNNCC 2 cut(s) 137, 196
PspPI GGNCC 2 cut(s) 135, 195
PspPPI RGGWCCY 1 cut(s) 195
PstI CTGCAG 1 cut(s) 669
PstNI CAGNNNCTG 1 cut(s) 472
SacII CCGCGG 1 cut(s) 162
SalI GTCGAC 1 cut(s) 263
SaqAI TTAA 1 cut(s) 654
SatI GCNGC 6 cut(s) 118, 121, 159, 171, 561, 660
Sau3AI GATC 1 cut(s) 630
Sau96I GGNCC 2 cut(s) 135, 195
ScrFI CCNGG 3 cut(s) 140, 226, 551
SduI GDGCHC 1 cut(s) 11
SetI ASST 9 cut(s) 243, 400, 520, 552, 569, 624, 661, 679, 696
SfaNI GCATC 2 cut(s) 268, 547
SfcI CTRYAG 1 cut(s) 665
Sfr303I CCGCGG 1 cut(s) 162
SgrBI CCGCGG 1 cut(s) 162
SinI GGWCC 1 cut(s) 195
Sse9I AATT 2 cut(s) 43, 128
SsiI CCGC 6 cut(s) 118, 121, 159, 161, 171, 524
SspMI CTAG 2 cut(s) 564, 681
StyD4I CCNGG 3 cut(s) 138, 224, 549
TaaI ACNGT 2 cut(s) 205, 262
TaiI ACGT 2 cut(s) 243, 679
TaqI TCGA 2 cut(s) 85, 264
TasI AATT 2 cut(s) 43, 128
TauI GCSGC 4 cut(s) 120, 123, 161, 173
TfiI GAWTC 3 cut(s) 87, 297, 374
Tru1I TTAA 1 cut(s) 654
Tru9I TTAA 1 cut(s) 654
TseFI GTSAC 2 cut(s) 410, 503
TseI GCWGC 2 cut(s) 560, 659
Tsp45I GTSAC 2 cut(s) 410, 503
TspDTI ATGAA 1 cut(s) 205
TspGWI ACGGA 2 cut(s) 71, 169
Van91I CCANNNNNTGG 1 cut(s) 274
VpaK11BI GGWCC 1 cut(s) 195
XmiI GTMKAC 1 cut(s) 264
XmnI GAANNNNTTC 1 cut(s) 452
XspI CTAG 2 cut(s) 564, 681
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.