Rh6BG075200

CBS domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0013909
Physical Location & Seq
Reverse (-)
11573288 .. 11578877
5590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG075200.1

Sequence Viewer

Length: 606 bp
ATGATGGGCTCAAACTCAATCCAAATCCCAATCGCTCTGGCCTATCACACCTCCCCTCCTTCTCTTTCACCTCTCACCTTCTCCCTTCCTCTACTTCCTCGCTCGCCTTTACCTCCCTCTCTACGACGTCGTTTCCAGACTCTCCGCCTCGCAATCCATCGCCGCTCTTCAATTCTCGCCTCCTCCTCCTCCTCCGCCGCCGGCGTCACCAATTCCGCGCCGAGAAATGGAAACTACACCGTCAGCGATTTCATGACCACCAAAGAGCATTTACACGTCGTTAAACCCTCCACAACCGTCGACCAAGCATTGGATTTTCTGGTGGAGAAGAGAATTACCGGTTTTCCTGTGATTGATGATGACTGGAAGCTGGTTGGTGTTGTTTCGGATTATGACTTGTTAGCATTGGACTCCATATCAGGAAATATAGGAGGTGGTAGTCAACATGACACAAACTTATTTCCAGATGTGGACAGTTCTTGGAAGACATTCAATGAAATACAGAAATTGCTTAGCAAAACGAATGGAAAAGTTGTTGGCGACTTGATGACACCTGCTCCACTTGTTGTTCGTGAAACCACCAACCTAGAAGATGCTGCTAGGTAA

Protein Analysis

201

Amino Acids

21.85

Weight (kDa)

6.97

Isoelectric Point (pI)

50.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBS PF00571 81 - 135 4.1e-13 CBS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013909)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34120
fragaria_vesca FvH4_2g05710 FvH4_2g05710
malus_domestica MD05G1085200.v1.1
prunus_persica Prupe.8G129500_v2.0.a1
pyrus_communis pycom05g08450 pycom1609g00040
rosa_chinensis RchiOBHm_Chr6g0256581
rosa_laevigata RLG00000014753
rosa_multiflora Rmu_sc0003012.1_g000012
rosa_roxburghii Rroxscaffold_7G00209210
rosa_rugosa Rorug05G0564700
rosa_samantha Rh6AG082500 Rh6BG075200 Rh6CG071800 Rh6DG069000
rosa_wichuraiana Rw6G007430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 562
AatII GACGTC 1 cut(s) 130
Acc36I ACCTGC 1 cut(s) 562
AccB7I CCANNNNNTGG 1 cut(s) 310
AccBSI CCGCTC 1 cut(s) 165
AccI GTMKAC 1 cut(s) 300
AccII CGCG 1 cut(s) 218
AciI CCGC 5 cut(s) 145, 163, 195, 198, 216
AcyI GRCGYC 2 cut(s) 127, 204
AfiI CCNNNNNNNGG 2 cut(s) 227, 310
AflIII ACRYGT 1 cut(s) 274
AgeI ACCGGT 1 cut(s) 338
AgsI TTSAA 2 cut(s) 171, 493
AjiI CACGTC 1 cut(s) 277
AluBI AGCT 1 cut(s) 370
AluI AGCT 1 cut(s) 370
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 596
AsiGI ACCGGT 1 cut(s) 338
Asp700I GAANNNNTTC 1 cut(s) 488
AspLEI GCGC 1 cut(s) 220
AsuHPI GGTGA 3 cut(s) 60, 67, 199
BanII GRGCYC 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 491
BbvI GCAGC 1 cut(s) 583
BccI CCATC 1 cut(s) 165
BfaI CTAG 2 cut(s) 587, 600
BfuAI ACCTGC 1 cut(s) 562
BisI GCNGC 3 cut(s) 163, 198, 597
BlpI GCTNAGC 1 cut(s) 512
BlsI GCNGC 3 cut(s) 164, 199, 598
BmgBI CACGTC 1 cut(s) 277
BmsI GCATC 1 cut(s) 583
BpiI GAAGAC 1 cut(s) 491
Bpu1102I GCTNAGC 1 cut(s) 512
BsaHI GRCGYC 2 cut(s) 127, 204
BsaWI WCCGGW 1 cut(s) 338
BsaXI ACNNNNNCTCC 4 cut(s) 40, 70, 541, 571
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 310
Bse118I RCCGGY 2 cut(s) 200, 338
Bse1I ACTGG 1 cut(s) 368
BseLI CCNNNNNNNGG 2 cut(s) 227, 310
BseNI ACTGG 1 cut(s) 368
BseRI GAGGAG 4 cut(s) 172, 175, 178, 181
BseXI GCAGC 1 cut(s) 583
Bsh1236I CGCG 1 cut(s) 218
BshFI GGCC 1 cut(s) 41
BshTI ACCGGT 1 cut(s) 338
BsiSI CCGG 2 cut(s) 201, 339
BslI CCNNNNNNNGG 2 cut(s) 227, 310
BsnI GGCC 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 11
Bsp1720I GCTNAGC 1 cut(s) 512
BspACI CCGC 5 cut(s) 145, 163, 195, 198, 216
BspANI GGCC 1 cut(s) 41
BspFNI CGCG 1 cut(s) 218
BspHI TCATGA 1 cut(s) 252
BspMI ACCTGC 1 cut(s) 562
BspQI GCTCTTC 1 cut(s) 172
BsrBI CCGCTC 1 cut(s) 165
BsrFI RCCGGY 2 cut(s) 200, 338
BsrI ACTGG 1 cut(s) 368
BssAI RCCGGY 2 cut(s) 200, 338
BssNI GRCGYC 2 cut(s) 127, 204
Bst4CI ACNGT 3 cut(s) 241, 298, 476
Bst6I CTCTTC 2 cut(s) 172, 323
BstACI GRCGYC 2 cut(s) 127, 204
BstC8I GCNNGC 2 cut(s) 104, 202
BstDEI CTNAG 1 cut(s) 512
BstFNI CGCG 1 cut(s) 218
BstHHI GCGC 1 cut(s) 220
BstUI CGCG 1 cut(s) 218
BstV1I GCAGC 1 cut(s) 583
BstV2I GAAGAC 1 cut(s) 491
BsuRI GGCC 1 cut(s) 41
BtgZI GCGATG 1 cut(s) 143
BtrI CACGTC 1 cut(s) 277
BveI ACCTGC 1 cut(s) 562
Cac8I GCNNGC 2 cut(s) 104, 202
CciI TCATGA 1 cut(s) 252
CfoI GCGC 1 cut(s) 220
Cfr10I RCCGGY 2 cut(s) 200, 338
CseI GACGC 1 cut(s) 193
CspAI ACCGGT 1 cut(s) 338
CviAII CATG 2 cut(s) 253, 446
CviJI RGCY 3 cut(s) 9, 41, 370
CviKI_1 RGCY 3 cut(s) 9, 41, 370
DdeI CTNAG 1 cut(s) 512
Eam1104I CTCTTC 2 cut(s) 172, 323
EarI CTCTTC 2 cut(s) 172, 323
EciI GGCGGA 2 cut(s) 134, 184
Eco24I GRGCYC 1 cut(s) 11
EcoT38I GRGCYC 1 cut(s) 11
FaeI CATG 2 cut(s) 256, 449
FaiI YATR 5 cut(s) 254, 393, 416, 428, 447
FatI CATG 2 cut(s) 252, 445
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 3 cut(s) 163, 198, 597
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 3 cut(s) 163, 198, 597
FspBI CTAG 2 cut(s) 587, 600
GlaI GCGC 1 cut(s) 219
GluI GCNGC 3 cut(s) 163, 198, 597
HaeIII GGCC 1 cut(s) 41
HapII CCGG 2 cut(s) 201, 339
HgaI GACGC 1 cut(s) 193
HhaI GCGC 1 cut(s) 220
Hin1I GRCGYC 2 cut(s) 127, 204
Hin1II CATG 2 cut(s) 256, 449
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HincII GTYRAC 2 cut(s) 301, 443
HindII GTYRAC 2 cut(s) 301, 443
HinfI GANTC 2 cut(s) 139, 410
HpaII CCGG 2 cut(s) 201, 339
HphI GGTGA 3 cut(s) 60, 67, 199
Hpy166II GTNNAC 3 cut(s) 301, 443, 472
Hpy188I TCNGA 1 cut(s) 388
Hpy188III TCNNGA 5 cut(s) 136, 253, 420, 464, 572
Hpy8I GTNNAC 3 cut(s) 301, 443, 472
Hpy99I CGWCG 4 cut(s) 129, 132, 281, 302
HpyAV CCTTC 3 cut(s) 69, 88, 95
HpyCH4III ACNGT 3 cut(s) 241, 298, 476
HpyCH4IV ACGT 2 cut(s) 127, 276
HpyF3I CTNAG 1 cut(s) 512
HpySE526I ACGT 2 cut(s) 127, 276
Hsp92I GRCGYC 2 cut(s) 127, 204
Hsp92II CATG 2 cut(s) 256, 449
HspAI GCGC 1 cut(s) 218
KroI GCCGGC 1 cut(s) 200
KroNI GCCGGC 1 cut(s) 202
LguI GCTCTTC 1 cut(s) 172
LmnI GCTCC 1 cut(s) 562
Lsp1109I GCAGC 1 cut(s) 583
LweI GCATC 1 cut(s) 583
MaeI CTAG 2 cut(s) 587, 600
MaeII ACGT 2 cut(s) 127, 276
MaeIII GTNAC 1 cut(s) 205
MbiI CCGCTC 1 cut(s) 165
MboII GAAGA 4 cut(s) 159, 340, 496, 602
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 4 cut(s) 171, 211, 333, 506
MlyI GAGTC 2 cut(s) 133, 404
MreI CGCCGGCG 1 cut(s) 200
MroNI GCCGGC 1 cut(s) 200
MroXI GAANNNNTTC 1 cut(s) 488
MseI TTAA 1 cut(s) 282
MspI CCGG 2 cut(s) 201, 339
MvnI CGCG 1 cut(s) 218
NaeI GCCGGC 1 cut(s) 202
NgoMIV GCCGGC 1 cut(s) 200
NlaIII CATG 2 cut(s) 256, 449
NmeAIII GCCGAG 1 cut(s) 246
NmuCI GTSAC 1 cut(s) 205
PagI TCATGA 1 cut(s) 252
PaqCI CACCTGC 1 cut(s) 562
PciSI GCTCTTC 1 cut(s) 172
PdiI GCCGGC 1 cut(s) 202
PdmI GAANNNNTTC 1 cut(s) 488
PflMI CCANNNNNTGG 1 cut(s) 310
PinAI ACCGGT 1 cut(s) 338
PkrI GCNGC 3 cut(s) 164, 199, 598
PleI GAGTC 2 cut(s) 133, 404
PpsI GAGTC 2 cut(s) 133, 404
SalI GTCGAC 1 cut(s) 299
SapI GCTCTTC 1 cut(s) 172
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 3 cut(s) 163, 198, 597
SchI GAGTC 2 cut(s) 133, 404
SduI GDGCHC 1 cut(s) 11
SfaNI GCATC 1 cut(s) 583
SgrAI CRCCGGYG 1 cut(s) 200
Sse9I AATT 4 cut(s) 171, 211, 333, 506
SsiI CCGC 5 cut(s) 145, 163, 195, 198, 216
SspMI CTAG 2 cut(s) 587, 600
TaaI ACNGT 3 cut(s) 241, 298, 476
TaiI ACGT 2 cut(s) 130, 279
TaqI TCGA 1 cut(s) 300
TasI AATT 4 cut(s) 171, 211, 333, 506
TauI GCSGC 2 cut(s) 165, 200
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 1 cut(s) 596
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 2 cut(s) 241, 510
Van91I CCANNNNNTGG 1 cut(s) 310
XmiI GTMKAC 1 cut(s) 300
XmnI GAANNNNTTC 1 cut(s) 488
XspI CTAG 2 cut(s) 587, 600
ZraI GACGTC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.