Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0013909

Physical Location & Seq

Genomic Coordinates Forward (+)

15282245 .. 15285999

Gene Structure 3755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G129500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGATGGGCTCAATCTCAATCCTTGTCCCCATAACTTTCCCCAATTACTCTCCTCTTTCTTCTTCTGCAACTCCCAGCTCTTCCCTTCTTCCGCTTCGTCGATTCCCTCTCCTCGCTCTCTCCAAACGACGCCGTAGCCTCCAGTTCCGGCCTCTGGTTCTCGCCTCCTCAGCCGCCGGAGTCGCCTCCAATTCCCTCCCCAGAAATGGGACCTTCACCGTCGGCGATTTCATGACCACTAAGGAGTATTTGCACGTCGTCAAGCCCTCCACGACCGTCGACCAAGCATTGGATGCTCTTGTGGAGAAGAGAATTACCGGCTTTCCTGTGATTGACGATGACTGGAAACTCGTTGGTGTTGTTTCAGATTATGACTTGTTAGCGTTAGACTCCATATCTGGAAACATAAAAGGTGGTCAAAGTGACACAAACTTGTTTCCAGATGTTGATAGTTCTTGGAAAACATTCCACGAGATACAGAAACTGCTTAGCAAGACCAACGGCAAAGTTGTTGGTGACGTGATGACACCTGCTCCACTTGTTGTTCGTGAAACCACCAACCTAGAAGATGCTGCTAGGTTGTTGCTTGCAACAAAATATCGCCGACTGCCAGTTGTAGATAGTGAGGGGAAGCTGGTTGGGATCATTACGAGGGGAAACGTTGTTAAAGCTGCCCTACAGATAAAACGTGCTGGTGAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0019725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

235

Amino Acids

25.39

Weight (kDa)

9.66

Isoelectric Point (pI)

45.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34120
fragaria_vesca	FvH4_2g05710 FvH4_2g05710
malus_domestica	MD05G1085200.v1.1
prunus_persica	Prupe.8G129500_v2.0.a1
pyrus_communis	pycom05g08450 pycom1609g00040
rosa_chinensis	RchiOBHm_Chr6g0256581
rosa_laevigata	RLG00000014753
rosa_multiflora	Rmu_sc0003012.1_g000012
rosa_roxburghii	Rroxscaffold_7G00209210
rosa_rugosa	Rorug05G0564700
rosa_samantha	Rh6AG082500 Rh6BG075200 Rh6CG071800 Rh6DG069000
rosa_wichuraiana	Rw6G007430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	538
Acc36I	ACCTGC	1 cut(s)	538
AccB7I	CCANNNNNTGG	1 cut(s)	289
AccI	GTMKAC	1 cut(s)	279
AciI	CCGC	2 cut(s)	92, 174
AclI	AACGTT	1 cut(s)	660
AclWI	GGATC	1 cut(s)	650
AcyI	GRCGYC	1 cut(s)	130
AfiI	CCNNNNNNNGG	4 cut(s)	154, 206, 207, 289
AjiI	CACGTC	2 cut(s)	256, 520
AluBI	AGCT	3 cut(s)	78, 634, 671
AluI	AGCT	3 cut(s)	78, 634, 671
AlwI	GGATC	1 cut(s)	650
AlwNI	CAGNNNCTG	1 cut(s)	484
AoxI	GGCC	1 cut(s)	149
ApeKI	GCWGC	2 cut(s)	572, 671
Asp700I	GAANNNNTTC	1 cut(s)	464
AspS9I	GGNCC	1 cut(s)	210
AsuHPI	GGTGA	2 cut(s)	208, 527
AvaII	GGWCC	1 cut(s)	210
BanII	GRGCYC	1 cut(s)	11
BauI	CACGAG	1 cut(s)	470
BbvCI	CCTCAGC	1 cut(s)	169
BbvI	GCAGC	2 cut(s)	559, 658
BceAI	ACGGC	2 cut(s)	117, 517
BfaI	CTAG	2 cut(s)	563, 576
BfmI	CTRYAG	1 cut(s)	677
BfuAI	ACCTGC	1 cut(s)	538
BisI	GCNGC	3 cut(s)	174, 573, 672
BlpI	GCTNAGC	1 cut(s)	488
BlsI	GCNGC	3 cut(s)	175, 574, 673
Bme18I	GGWCC	1 cut(s)	210
BmgBI	CACGTC	2 cut(s)	256, 520
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	1 cut(s)	211
BmsI	GCATC	2 cut(s)	283, 559
BpmI	CTGGAG	1 cut(s)	125
Bpu10I	CCTNAGC	1 cut(s)	169
Bpu1102I	GCTNAGC	1 cut(s)	488
BsaHI	GRCGYC	1 cut(s)	130
BsaXI	ACNNNNNCTCC	2 cut(s)	517, 547
Bsc4I	CCNNNNNNNGG	4 cut(s)	154, 206, 207, 289
Bse118I	RCCGGY	1 cut(s)	317
Bse1I	ACTGG	3 cut(s)	142, 347, 611
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	4 cut(s)	154, 206, 207, 289
BseMII	CTCAG	1 cut(s)	183
BseNI	ACTGG	3 cut(s)	142, 347, 611
BseRI	GAGGAG	3 cut(s)	42, 101, 157
BseXI	GCAGC	2 cut(s)	559, 658
BseYI	CCCAGC	1 cut(s)	74
Bsh1285I	CGRYCG	1 cut(s)	276
BshFI	GGCC	1 cut(s)	151
BsiEI	CGRYCG	1 cut(s)	276
BsiSI	CCGG	3 cut(s)	148, 177, 318
BslFI	GGGAC	2 cut(s)	11, 223
BslI	CCNNNNNNNGG	4 cut(s)	154, 206, 207, 289
BsmFI	GGGAC	2 cut(s)	11, 223
BsnI	GGCC	1 cut(s)	151
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	642
Bsp1720I	GCTNAGC	1 cut(s)	488
BspACI	CCGC	2 cut(s)	92, 174
BspANI	GGCC	1 cut(s)	151
BspCNI	CTCAG	1 cut(s)	182
BspHI	TCATGA	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	211
BspMI	ACCTGC	1 cut(s)	538
BspPI	GGATC	1 cut(s)	650
BspQI	GCTCTTC	1 cut(s)	85
BsrFI	RCCGGY	1 cut(s)	317
BsrI	ACTGG	3 cut(s)	142, 347, 611
BssAI	RCCGGY	1 cut(s)	317
BssMI	GATC	1 cut(s)	642
BssNI	GRCGYC	1 cut(s)	130
BssSI	CACGAG	1 cut(s)	470
Bst2BI	CACGAG	1 cut(s)	470
Bst4CI	ACNGT	2 cut(s)	220, 277
Bst6I	CTCTTC	2 cut(s)	85, 302
BstACI	GRCGYC	1 cut(s)	130
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstC8I	GCNNGC	1 cut(s)	588
BstDEI	CTNAG	3 cut(s)	169, 240, 488
BstF5I	GGATG	1 cut(s)	298
BstKTI	GATC	1 cut(s)	645
BstMBI	GATC	1 cut(s)	642
BstMCI	CGRYCG	1 cut(s)	276
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 182, 293
BstSFI	CTRYAG	1 cut(s)	677
BstV1I	GCAGC	2 cut(s)	559, 658
BsuRI	GGCC	1 cut(s)	151
BtrI	CACGTC	2 cut(s)	256, 520
BtsCI	GGATG	1 cut(s)	298
BveI	ACCTGC	1 cut(s)	538
Cac8I	GCNNGC	1 cut(s)	588
CaiI	CAGNNNCTG	1 cut(s)	484
CciI	TCATGA	1 cut(s)	231
Cfr10I	RCCGGY	1 cut(s)	317
Cfr13I	GGNCC	1 cut(s)	210
CseI	GACGC	1 cut(s)	138
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	9 cut(s)	9, 78, 138, 151, 173, 265, 321, 634, 671
CviKI_1	RGCY	9 cut(s)	9, 78, 138, 151, 173, 265, 321, 634, 671
DdeI	CTNAG	3 cut(s)	169, 240, 488
DpnI	GATC	1 cut(s)	644
DpnII	GATC	1 cut(s)	642
Eam1104I	CTCTTC	2 cut(s)	85, 302
EarI	CTCTTC	2 cut(s)	85, 302
Eco24I	GRGCYC	1 cut(s)	11
Eco47I	GGWCC	1 cut(s)	210
EcoO109I	RGGNCCY	1 cut(s)	210
EcoT38I	GRGCYC	1 cut(s)	11
FaeI	CATG	1 cut(s)	235
FaiI	YATR	5 cut(s)	32, 233, 372, 395, 407
FaqI	GGGAC	2 cut(s)	11, 223
FatI	CATG	1 cut(s)	231
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	3 cut(s)	174, 573, 672
FokI	GGATG	1 cut(s)	305
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	3 cut(s)	174, 573, 672
FspBI	CTAG	2 cut(s)	563, 576
GluI	GCNGC	3 cut(s)	174, 573, 672
GsaI	CCCAGC	1 cut(s)	78
GsuI	CTGGAG	1 cut(s)	125
HaeIII	GGCC	1 cut(s)	151
HapII	CCGG	3 cut(s)	148, 177, 318
HgaI	GACGC	1 cut(s)	138
Hin1I	GRCGYC	1 cut(s)	130
Hin1II	CATG	1 cut(s)	235
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	3 cut(s)	102, 180, 389
HpaII	CCGG	3 cut(s)	148, 177, 318
HphI	GGTGA	2 cut(s)	208, 527
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	1 cut(s)	367
Hpy188III	TCNNGA	4 cut(s)	232, 399, 440, 548
Hpy8I	GTNNAC	1 cut(s)	280
Hpy99I	CGWCG	5 cut(s)	102, 132, 224, 260, 281
HpyAV	CCTTC	2 cut(s)	95, 223
HpyCH4III	ACNGT	2 cut(s)	220, 277
HpyCH4IV	ACGT	4 cut(s)	255, 519, 660, 688
HpyCH4V	TGCA	3 cut(s)	68, 253, 590
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 182, 293
HpyF3I	CTNAG	3 cut(s)	169, 240, 488
HpySE526I	ACGT	4 cut(s)	255, 519, 660, 688
Hsp92I	GRCGYC	1 cut(s)	130
Hsp92II	CATG	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	642
LguI	GCTCTTC	1 cut(s)	85
LmnI	GCTCC	1 cut(s)	538
Lsp1109I	GCAGC	2 cut(s)	559, 658
LweI	GCATC	2 cut(s)	283, 559
MaeI	CTAG	2 cut(s)	563, 576
MaeII	ACGT	4 cut(s)	255, 519, 660, 688
MaeIII	GTNAC	2 cut(s)	422, 515
MalI	GATC	1 cut(s)	644
MboI	GATC	1 cut(s)	642
MboII	GAAGA	6 cut(s)	51, 54, 72, 80, 319, 578
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	3 cut(s)	43, 190, 312
MlyI	GAGTC	2 cut(s)	189, 383
MroXI	GAANNNNTTC	1 cut(s)	464
MseI	TTAA	1 cut(s)	666
MspI	CCGG	3 cut(s)	148, 177, 318
MwoI	GCNNNNNNNGC	3 cut(s)	170, 182, 293
NdeII	GATC	1 cut(s)	642
NlaIII	CATG	1 cut(s)	235
NlaIV	GGNNCC	1 cut(s)	211
NmuCI	GTSAC	2 cut(s)	422, 515
PagI	TCATGA	1 cut(s)	231
PaqCI	CACCTGC	1 cut(s)	538
PciSI	GCTCTTC	1 cut(s)	85
PdmI	GAANNNNTTC	1 cut(s)	464
PfeI	GAWTC	1 cut(s)	102
PflMI	CCANNNNNTGG	1 cut(s)	289
PkrI	GCNGC	3 cut(s)	175, 574, 673
PleI	GAGTC	2 cut(s)	188, 383
PpsI	GAGTC	2 cut(s)	188, 383
PpuMI	RGGWCCY	1 cut(s)	210
Psp1406I	AACGTT	1 cut(s)	660
Psp5II	RGGWCCY	1 cut(s)	210
PspFI	CCCAGC	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	211
PspPI	GGNCC	1 cut(s)	210
PspPPI	RGGWCCY	1 cut(s)	210
PstNI	CAGNNNCTG	1 cut(s)	484
SalI	GTCGAC	1 cut(s)	278
SapI	GCTCTTC	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	666
SatI	GCNGC	3 cut(s)	174, 573, 672
Sau3AI	GATC	1 cut(s)	642
Sau96I	GGNCC	1 cut(s)	210
SchI	GAGTC	2 cut(s)	189, 383
SduI	GDGCHC	1 cut(s)	11
SfaNI	GCATC	2 cut(s)	283, 559
SfcI	CTRYAG	1 cut(s)	677
SinI	GGWCC	1 cut(s)	210
Sse9I	AATT	3 cut(s)	43, 190, 312
SsiI	CCGC	2 cut(s)	92, 174
SspMI	CTAG	2 cut(s)	563, 576
TaaI	ACNGT	2 cut(s)	220, 277
TaiI	ACGT	4 cut(s)	258, 522, 663, 691
TaqI	TCGA	2 cut(s)	100, 279
TasI	AATT	3 cut(s)	43, 190, 312
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	1 cut(s)	102
Tru1I	TTAA	1 cut(s)	666
Tru9I	TTAA	1 cut(s)	666
TseFI	GTSAC	2 cut(s)	422, 515
TseI	GCWGC	2 cut(s)	572, 671
Tsp45I	GTSAC	2 cut(s)	422, 515
TspDTI	ATGAA	1 cut(s)	220
Van91I	CCANNNNNTGG	1 cut(s)	289
VpaK11BI	GGWCC	1 cut(s)	210
XmiI	GTMKAC	1 cut(s)	279
XmnI	GAANNNNTTC	1 cut(s)	464
XspI	CTAG	2 cut(s)	563, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.