Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0013909

Physical Location & Seq

Genomic Coordinates Forward (+)

57231037 .. 57235789

Gene Structure 4753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014753

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGGCTCAAACTCAATCCAAATCCCAATCGCTTTGGCCTATCACAACTCCCCTCCTTCTTCTTCTCTTTCACCTCTCACCTTCTCCCTTCCTCTACTTCCTCGCTCGCCTCTTCCTCCCTCTCTACGACGTCGTTTCCACACTCTCCGCCTCGCAATCCATCGCCGCTCTTCAATTCTCGCCTCCTCCTCCTCCGCCGCCGGCGTCACCAATTCCGTTCCGAGAAATGGAAACTACACCGTCAGCGATTTCATGACCACCAAAGAGCATTTACACGTCGTTAAACCCTCCACAACCGTCGACCAAGCATTGGATTTTCTGGTGGAGAAGAGAATCACCGGTTTTCCTGTGATTGATGATGACTGGAAGCTGGTTGGTGTAGTTTCGGATTATGACTTGTTAGCATTAGACTCCATTTCAGGAAATATAGGAGGTGTTAGTCAACATGACACAAACTTATTTCCAGATGTGGACAGTTCTTGGAAGACATTCAATGAAATACAGAAATTGCTTAGCAAAACGAATGGAAAAGTTGTTGGCGACTTGATGACACCTGCTCCACTTGTTGTTCGTGAAACCACCAACCTAGAAGATGCTGCTAGGTTGTTGCTTGCAACAAAATATCGCCGACTGCCAGTTGTAGATAGTGATGGCAAGCTGGTTGGGATCATTACAAGGGGAAATGTTGTTAAAGCTGCCCTTCAGATAAAACGTGGTAGTAAAAAATTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0019725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

245

Amino Acids

26.55

Weight (kDa)

9.79

Isoelectric Point (pI)

47.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	81 - 135	5.8e-13	CBS domain
CBS	PF00571	179 - 233	2.3e-17	CBS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34120
fragaria_vesca	FvH4_2g05710 FvH4_2g05710
malus_domestica	MD05G1085200.v1.1
prunus_persica	Prupe.8G129500_v2.0.a1
pyrus_communis	pycom05g08450 pycom1609g00040
rosa_chinensis	RchiOBHm_Chr6g0256581
rosa_laevigata	RLG00000014753
rosa_multiflora	Rmu_sc0003012.1_g000012
rosa_roxburghii	Rroxscaffold_7G00209210
rosa_rugosa	Rorug05G0564700
rosa_samantha	Rh6AG082500 Rh6BG075200 Rh6CG071800 Rh6DG069000
rosa_wichuraiana	Rw6G007430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	562
AatII	GACGTC	1 cut(s)	133
Acc36I	ACCTGC	1 cut(s)	562
AccB7I	CCANNNNNTGG	1 cut(s)	310
AccBSI	CCGCTC	1 cut(s)	168
AccI	GTMKAC	1 cut(s)	300
AciI	CCGC	4 cut(s)	148, 166, 195, 198
AclWI	GGATC	1 cut(s)	674
AcuI	CTGAAG	1 cut(s)	686
AcyI	GRCGYC	2 cut(s)	130, 204
AfiI	CCNNNNNNNGG	2 cut(s)	227, 310
AflIII	ACRYGT	1 cut(s)	274
AgeI	ACCGGT	1 cut(s)	338
AgsI	TTSAA	2 cut(s)	174, 493
AjiI	CACGTC	1 cut(s)	277
AluBI	AGCT	4 cut(s)	370, 658, 695, 731
AluI	AGCT	4 cut(s)	370, 658, 695, 731
AlwI	GGATC	1 cut(s)	674
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	2 cut(s)	596, 695
AsiGI	ACCGGT	1 cut(s)	338
Asp700I	GAANNNNTTC	1 cut(s)	488
AsuHPI	GGTGA	4 cut(s)	63, 70, 199, 328
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	491
BbvI	GCAGC	2 cut(s)	583, 682
BccI	CCATC	2 cut(s)	168, 644
BfaI	CTAG	2 cut(s)	587, 600
BfuAI	ACCTGC	1 cut(s)	562
BisI	GCNGC	4 cut(s)	166, 198, 597, 696
BlpI	GCTNAGC	1 cut(s)	512
BlsI	GCNGC	4 cut(s)	167, 199, 598, 697
BmgBI	CACGTC	1 cut(s)	277
BmsI	GCATC	1 cut(s)	583
BpiI	GAAGAC	1 cut(s)	491
Bpu1102I	GCTNAGC	1 cut(s)	512
BsaHI	GRCGYC	2 cut(s)	130, 204
BsaWI	WCCGGW	1 cut(s)	338
BsaXI	ACNNNNNCTCC	2 cut(s)	541, 571
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 310
Bse118I	RCCGGY	2 cut(s)	200, 338
Bse1I	ACTGG	2 cut(s)	368, 635
BseLI	CCNNNNNNNGG	2 cut(s)	227, 310
BseNI	ACTGG	2 cut(s)	368, 635
BseRI	GAGGAG	3 cut(s)	175, 178, 181
BseXI	GCAGC	2 cut(s)	583, 682
BshFI	GGCC	1 cut(s)	38
BshTI	ACCGGT	1 cut(s)	338
BsiSI	CCGG	2 cut(s)	201, 339
BslI	CCNNNNNNNGG	2 cut(s)	227, 310
BsnI	GGCC	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	1 cut(s)	666
Bsp1720I	GCTNAGC	1 cut(s)	512
BspACI	CCGC	4 cut(s)	148, 166, 195, 198
BspANI	GGCC	1 cut(s)	38
BspHI	TCATGA	1 cut(s)	252
BspMI	ACCTGC	1 cut(s)	562
BspPI	GGATC	1 cut(s)	674
BspQI	GCTCTTC	1 cut(s)	175
BsrBI	CCGCTC	1 cut(s)	168
BsrFI	RCCGGY	2 cut(s)	200, 338
BsrI	ACTGG	2 cut(s)	368, 635
BssAI	RCCGGY	2 cut(s)	200, 338
BssMI	GATC	1 cut(s)	666
BssNI	GRCGYC	2 cut(s)	130, 204
Bst4CI	ACNGT	3 cut(s)	241, 298, 476
Bst6I	CTCTTC	3 cut(s)	117, 175, 323
BstACI	GRCGYC	2 cut(s)	130, 204
BstC8I	GCNNGC	4 cut(s)	107, 202, 612, 656
BstDEI	CTNAG	2 cut(s)	512, 732
BstKTI	GATC	1 cut(s)	669
BstMBI	GATC	1 cut(s)	666
BstV1I	GCAGC	2 cut(s)	583, 682
BstV2I	GAAGAC	1 cut(s)	491
BsuRI	GGCC	1 cut(s)	38
BtgZI	GCGATG	1 cut(s)	146
BtrI	CACGTC	1 cut(s)	277
BveI	ACCTGC	1 cut(s)	562
Cac8I	GCNNGC	4 cut(s)	107, 202, 612, 656
CciI	TCATGA	1 cut(s)	252
Cfr10I	RCCGGY	2 cut(s)	200, 338
CseI	GACGC	1 cut(s)	193
CspAI	ACCGGT	1 cut(s)	338
CviAII	CATG	2 cut(s)	253, 446
CviJI	RGCY	6 cut(s)	6, 38, 370, 658, 695, 731
CviKI_1	RGCY	6 cut(s)	6, 38, 370, 658, 695, 731
DdeI	CTNAG	2 cut(s)	512, 732
DpnI	GATC	1 cut(s)	668
DpnII	GATC	1 cut(s)	666
Eam1104I	CTCTTC	3 cut(s)	117, 175, 323
EarI	CTCTTC	3 cut(s)	117, 175, 323
EciI	GGCGGA	2 cut(s)	137, 184
Eco24I	GRGCYC	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	686
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	2 cut(s)	256, 449
FaiI	YATR	4 cut(s)	254, 393, 428, 447
FalI	AAGNNNNNCTT	2 cut(s)	684, 716
FatI	CATG	2 cut(s)	252, 445
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	4 cut(s)	166, 198, 597, 696
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	4 cut(s)	166, 198, 597, 696
FspBI	CTAG	2 cut(s)	587, 600
GluI	GCNGC	4 cut(s)	166, 198, 597, 696
HaeIII	GGCC	1 cut(s)	38
HapII	CCGG	2 cut(s)	201, 339
HgaI	GACGC	1 cut(s)	193
Hin1I	GRCGYC	2 cut(s)	130, 204
Hin1II	CATG	2 cut(s)	256, 449
HincII	GTYRAC	2 cut(s)	301, 443
HindII	GTYRAC	2 cut(s)	301, 443
HinfI	GANTC	2 cut(s)	333, 410
HpaII	CCGG	2 cut(s)	201, 339
HphI	GGTGA	4 cut(s)	63, 70, 199, 328
Hpy166II	GTNNAC	3 cut(s)	301, 443, 472
Hpy188I	TCNGA	3 cut(s)	222, 388, 705
Hpy188III	TCNNGA	4 cut(s)	253, 420, 464, 572
Hpy8I	GTNNAC	3 cut(s)	301, 443, 472
Hpy99I	CGWCG	4 cut(s)	132, 135, 281, 302
HpyAV	CCTTC	4 cut(s)	66, 91, 98, 710
HpyCH4III	ACNGT	3 cut(s)	241, 298, 476
HpyCH4IV	ACGT	3 cut(s)	130, 276, 712
HpyCH4V	TGCA	1 cut(s)	614
HpyF3I	CTNAG	2 cut(s)	512, 732
HpySE526I	ACGT	3 cut(s)	130, 276, 712
Hsp92I	GRCGYC	2 cut(s)	130, 204
Hsp92II	CATG	2 cut(s)	256, 449
KroI	GCCGGC	1 cut(s)	200
KroNI	GCCGGC	1 cut(s)	202
Kzo9I	GATC	1 cut(s)	666
LguI	GCTCTTC	1 cut(s)	175
LmnI	GCTCC	1 cut(s)	562
Lsp1109I	GCAGC	2 cut(s)	583, 682
LweI	GCATC	1 cut(s)	583
MaeI	CTAG	2 cut(s)	587, 600
MaeII	ACGT	3 cut(s)	130, 276, 712
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	1 cut(s)	668
MbiI	CCGCTC	1 cut(s)	168
MboI	GATC	1 cut(s)	666
MboII	GAAGA	7 cut(s)	51, 54, 104, 162, 340, 496, 602
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	4 cut(s)	174, 211, 506, 725
MlyI	GAGTC	1 cut(s)	404
MreI	CGCCGGCG	1 cut(s)	200
MroNI	GCCGGC	1 cut(s)	200
MroXI	GAANNNNTTC	1 cut(s)	488
MseI	TTAA	2 cut(s)	282, 690
MspI	CCGG	2 cut(s)	201, 339
NaeI	GCCGGC	1 cut(s)	202
NdeII	GATC	1 cut(s)	666
NgoMIV	GCCGGC	1 cut(s)	200
NlaIII	CATG	2 cut(s)	256, 449
NmuCI	GTSAC	1 cut(s)	205
PagI	TCATGA	1 cut(s)	252
PaqCI	CACCTGC	1 cut(s)	562
PciSI	GCTCTTC	1 cut(s)	175
PdiI	GCCGGC	1 cut(s)	202
PdmI	GAANNNNTTC	1 cut(s)	488
PfeI	GAWTC	1 cut(s)	333
PflMI	CCANNNNNTGG	1 cut(s)	310
PinAI	ACCGGT	1 cut(s)	338
PkrI	GCNGC	4 cut(s)	167, 199, 598, 697
PleI	GAGTC	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	404
SalI	GTCGAC	1 cut(s)	299
SapI	GCTCTTC	1 cut(s)	175
SaqAI	TTAA	2 cut(s)	282, 690
SatI	GCNGC	4 cut(s)	166, 198, 597, 696
Sau3AI	GATC	1 cut(s)	666
SchI	GAGTC	1 cut(s)	404
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	583
SgrAI	CRCCGGYG	1 cut(s)	200
Sse9I	AATT	4 cut(s)	174, 211, 506, 725
SsiI	CCGC	4 cut(s)	148, 166, 195, 198
SspMI	CTAG	2 cut(s)	587, 600
TaaI	ACNGT	3 cut(s)	241, 298, 476
TaiI	ACGT	3 cut(s)	133, 279, 715
TaqI	TCGA	1 cut(s)	300
TasI	AATT	4 cut(s)	174, 211, 506, 725
TauI	GCSGC	2 cut(s)	168, 200
TfiI	GAWTC	1 cut(s)	333
Tru1I	TTAA	2 cut(s)	282, 690
Tru9I	TTAA	2 cut(s)	282, 690
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	2 cut(s)	596, 695
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	2 cut(s)	241, 510
TspGWI	ACGGA	1 cut(s)	205
Van91I	CCANNNNNTGG	1 cut(s)	310
XmiI	GTMKAC	1 cut(s)	300
XmnI	GAANNNNTTC	1 cut(s)	488
XspI	CTAG	2 cut(s)	587, 600
ZraI	GACGTC	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.