Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00001609

Orthogroup ID

OG0013909

Physical Location & Seq

Genomic Coordinates Reverse (-)

78947 .. 82255

Gene Structure 3309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom1609g00040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGACGGGCTCAATCTCAATCCCTGCCGCAATCGCTTTCCCGCATCCCTCTTCTCTGTCTTCTCCTTCAATCATTCCCATTCGTCGATTCCCTCTCCTCGCTCTCTCCAAACGACGCCGTCGCCTCCACTTGCGCCCCCTGGTTCTCGCTTCCTCTGCCGCCGGCGTCGCCGCCAATTCCGTCCCCATAAATGGGGTCTACACCGTCGGCGATTTCATGACTACCAGGGAGCATTTGCACGTCGTCAAGCCCTCCACCCCCGTCAGCCAAGCATTGGATGCTCTTGTTGAGAAGAGAATCACCGGTTTTCCTGTGATTGACGATGACTGGAAACTTGTTGGTGTTGTCTCAGATTACGATTTATTAGCGTTGGACTCCATATCCGGAAATATGAAAGGTGGTGGTCAAAGCGACACAAACTTGTTTCCAGATGTTGATAGTTCTTGGAAAACATTCAATGAGATACAGAAACTGCTTAGCAAGACCAATGGAAAATTTGTTGGTGACTTAATGACACCTGCTCCACTTGTTGTCCGTGAAACCACCAACCTGGAAGATGCTGCTAGGTTGTTGCTTGAAACAAAATATCGCCGACTGCCAGTTGTAGATAGTGAAGGCAAGCTGGTTGGCATCATTACGAGGGGGAATGTTGTTAAAGCTGCCCTGCAGATTAAACGTGCTAGTGAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0019725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045454 GO:0050789 GO:0050794 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS

Protein Analysis

231

Amino Acids

24.93

Weight (kDa)

9.73

Isoelectric Point (pI)

43.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBS	PF00571	69 - 123	3.3e-13	CBS domain
CBS	PF00571	167 - 221	9e-18	CBS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34120
fragaria_vesca	FvH4_2g05710 FvH4_2g05710
malus_domestica	MD05G1085200.v1.1
prunus_persica	Prupe.8G129500_v2.0.a1
pyrus_communis	pycom05g08450 pycom1609g00040
rosa_chinensis	RchiOBHm_Chr6g0256581
rosa_laevigata	RLG00000014753
rosa_multiflora	Rmu_sc0003012.1_g000012
rosa_roxburghii	Rroxscaffold_7G00209210
rosa_rugosa	Rorug05G0564700
rosa_samantha	Rh6AG082500 Rh6BG075200 Rh6CG071800 Rh6DG069000
rosa_wichuraiana	Rw6G007430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	526
Acc36I	ACCTGC	1 cut(s)	526
AccB7I	CCANNNNNTGG	1 cut(s)	274
AccI	GTMKAC	1 cut(s)	198
AccIII	TCCGGA	1 cut(s)	383
AciI	CCGC	4 cut(s)	27, 41, 159, 171
AcsI	RAATTY	1 cut(s)	494
AcyI	GRCGYC	2 cut(s)	115, 165
AfiI	CCNNNNNNNGG	3 cut(s)	191, 192, 274
AgeI	ACCGGT	1 cut(s)	302
AgsI	TTSAA	3 cut(s)	69, 457, 578
AjiI	CACGTC	1 cut(s)	241
AjnI	CCWGG	3 cut(s)	138, 224, 549
AluBI	AGCT	2 cut(s)	622, 659
AluI	AGCT	2 cut(s)	622, 659
Alw26I	GTCTC	1 cut(s)	352
AlwNI	CAGNNNCTG	1 cut(s)	472
Aor13HI	TCCGGA	1 cut(s)	383
ApeKI	GCWGC	2 cut(s)	560, 659
ApoI	RAATTY	1 cut(s)	494
AsiGI	ACCGGT	1 cut(s)	302
Asp700I	GAANNNNTTC	1 cut(s)	452
AspLEI	GCGC	1 cut(s)	135
AsuHPI	GGTGA	2 cut(s)	292, 515
BanII	GRGCYC	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	51
BbvI	GCAGC	2 cut(s)	547, 646
BceAI	ACGGC	1 cut(s)	102
BciT130I	CCWGG	3 cut(s)	140, 226, 551
BcoDI	GTCTC	1 cut(s)	352
BfaI	CTAG	2 cut(s)	564, 681
BfmI	CTRYAG	1 cut(s)	665
BfuAI	ACCTGC	1 cut(s)	526
BisI	GCNGC	5 cut(s)	27, 159, 171, 561, 660
BlpI	GCTNAGC	1 cut(s)	476
BlsI	GCNGC	5 cut(s)	28, 160, 172, 562, 661
Bme1390I	CCNGG	3 cut(s)	140, 226, 551
BmgBI	CACGTC	1 cut(s)	241
BmrFI	CCNGG	3 cut(s)	140, 226, 551
BmsI	GCATC	4 cut(s)	52, 268, 547, 639
BpiI	GAAGAC	1 cut(s)	51
Bpu1102I	GCTNAGC	1 cut(s)	476
BsaHI	GRCGYC	2 cut(s)	115, 165
BsaJI	CCNNGG	2 cut(s)	138, 225
BsaWI	WCCGGW	2 cut(s)	302, 383
BsaXI	ACNNNNNCTCC	2 cut(s)	505, 535
Bsc4I	CCNNNNNNNGG	3 cut(s)	191, 192, 274
Bse118I	RCCGGY	2 cut(s)	161, 302
Bse1I	ACTGG	2 cut(s)	332, 599
BseAI	TCCGGA	1 cut(s)	383
BseBI	CCWGG	3 cut(s)	140, 226, 551
BseDI	CCNNGG	2 cut(s)	138, 225
BseGI	GGATG	2 cut(s)	43, 283
BseLI	CCNNNNNNNGG	3 cut(s)	191, 192, 274
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	2 cut(s)	332, 599
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	2 cut(s)	547, 646
BshTI	ACCGGT	1 cut(s)	302
BsiSI	CCGG	3 cut(s)	162, 303, 384
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	3 cut(s)	191, 192, 274
BsmAI	GTCTC	1 cut(s)	352
BsmFI	GGGAC	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp13I	TCCGGA	1 cut(s)	383
Bsp1720I	GCTNAGC	1 cut(s)	476
BspACI	CCGC	4 cut(s)	27, 41, 159, 171
BspCNI	CTCAG	1 cut(s)	362
BspEI	TCCGGA	1 cut(s)	383
BspHI	TCATGA	1 cut(s)	216
BspMAI	CTGCAG	1 cut(s)	669
BspMI	ACCTGC	1 cut(s)	526
BsrFI	RCCGGY	2 cut(s)	161, 302
BsrI	ACTGG	2 cut(s)	332, 599
BssAI	RCCGGY	2 cut(s)	161, 302
BssECI	CCNNGG	2 cut(s)	138, 225
BssNI	GRCGYC	2 cut(s)	115, 165
Bst2UI	CCWGG	3 cut(s)	140, 226, 551
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	2 cut(s)	55, 287
BstACI	GRCGYC	2 cut(s)	115, 165
BstAPI	GCANNNNNTGC	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	163, 620
BstDEI	CTNAG	2 cut(s)	349, 476
BstF5I	GGATG	2 cut(s)	43, 283
BstHHI	GCGC	1 cut(s)	135
BstMAI	GTCTC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 155, 167, 278
BstNI	CCWGG	3 cut(s)	140, 226, 551
BstSCI	CCNGG	3 cut(s)	138, 224, 549
BstSFI	CTRYAG	1 cut(s)	665
BstV1I	GCAGC	2 cut(s)	547, 646
BstV2I	GAAGAC	1 cut(s)	51
BstXI	CCANNNNNNTGG	1 cut(s)	550
BtrI	CACGTC	1 cut(s)	241
BtsCI	GGATG	2 cut(s)	43, 283
BveI	ACCTGC	1 cut(s)	526
Cac8I	GCNNGC	2 cut(s)	163, 620
CaiI	CAGNNNCTG	1 cut(s)	472
CciI	TCATGA	1 cut(s)	216
CfoI	GCGC	1 cut(s)	135
Cfr10I	RCCGGY	2 cut(s)	161, 302
CseI	GACGC	2 cut(s)	123, 154
CspAI	ACCGGT	1 cut(s)	302
CviAII	CATG	1 cut(s)	217
CviJI	RGCY	5 cut(s)	9, 250, 267, 622, 659
CviKI_1	RGCY	5 cut(s)	9, 250, 267, 622, 659
DdeI	CTNAG	2 cut(s)	349, 476
Eam1104I	CTCTTC	2 cut(s)	55, 287
EarI	CTCTTC	2 cut(s)	55, 287
Eco24I	GRGCYC	1 cut(s)	11
EcoRII	CCWGG	3 cut(s)	138, 224, 549
EcoT38I	GRGCYC	1 cut(s)	11
FaeI	CATG	1 cut(s)	220
FaiI	YATR	4 cut(s)	188, 218, 380, 392
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	1 cut(s)	216
FauI	CCCGC	1 cut(s)	48
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	5 cut(s)	27, 159, 171, 561, 660
FokI	GGATG	2 cut(s)	30, 290
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	5 cut(s)	27, 159, 171, 561, 660
FspBI	CTAG	2 cut(s)	564, 681
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	5 cut(s)	27, 159, 171, 561, 660
HapII	CCGG	3 cut(s)	162, 303, 384
HgaI	GACGC	2 cut(s)	123, 154
HhaI	GCGC	1 cut(s)	135
Hin1I	GRCGYC	2 cut(s)	115, 165
Hin1II	CATG	1 cut(s)	220
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HinfI	GANTC	3 cut(s)	87, 297, 374
HpaII	CCGG	3 cut(s)	162, 303, 384
HphI	GGTGA	2 cut(s)	292, 515
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	1 cut(s)	352
Hpy188III	TCNNGA	3 cut(s)	217, 384, 428
Hpy8I	GTNNAC	1 cut(s)	199
Hpy99I	CGWCG	6 cut(s)	87, 117, 123, 170, 209, 245
HpyAV	CCTTC	2 cut(s)	75, 608
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	2 cut(s)	240, 676
HpyCH4V	TGCA	2 cut(s)	238, 667
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 155, 167, 278
HpyF3I	CTNAG	2 cut(s)	349, 476
HpySE526I	ACGT	2 cut(s)	240, 676
Hsp92I	GRCGYC	2 cut(s)	115, 165
Hsp92II	CATG	1 cut(s)	220
HspAI	GCGC	1 cut(s)	133
Kpn2I	TCCGGA	1 cut(s)	383
KroI	GCCGGC	1 cut(s)	161
KroNI	GCCGGC	1 cut(s)	163
LmnI	GCTCC	2 cut(s)	229, 526
Lsp1109I	GCAGC	2 cut(s)	547, 646
LweI	GCATC	4 cut(s)	52, 268, 547, 639
MaeI	CTAG	2 cut(s)	564, 681
MaeII	ACGT	2 cut(s)	240, 676
MaeIII	GTNAC	1 cut(s)	503
MboII	GAAGA	4 cut(s)	42, 51, 304, 566
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	2 cut(s)	175, 494
MlyI	GAGTC	1 cut(s)	368
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	7 cut(s)	58, 102, 107, 134, 163, 262, 633
MreI	CGCCGGCG	1 cut(s)	161
MroI	TCCGGA	1 cut(s)	383
MroNI	GCCGGC	1 cut(s)	161
MroXI	GAANNNNTTC	1 cut(s)	452
MseI	TTAA	3 cut(s)	509, 654, 672
MspI	CCGG	3 cut(s)	162, 303, 384
MspR9I	CCNGG	3 cut(s)	140, 226, 551
MvaI	CCWGG	3 cut(s)	140, 226, 551
MwoI	GCNNNNNNNGC	4 cut(s)	32, 155, 167, 278
NaeI	GCCGGC	1 cut(s)	163
NgoMIV	GCCGGC	1 cut(s)	161
NlaIII	CATG	1 cut(s)	220
NmuCI	GTSAC	1 cut(s)	503
PagI	TCATGA	1 cut(s)	216
PaqCI	CACCTGC	1 cut(s)	526
PdiI	GCCGGC	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	452
PfeI	GAWTC	2 cut(s)	87, 297
PflFI	GACNNNGTC	1 cut(s)	117
PflMI	CCANNNNNTGG	1 cut(s)	274
PinAI	ACCGGT	1 cut(s)	302
PkrI	GCNGC	5 cut(s)	28, 160, 172, 562, 661
PleI	GAGTC	1 cut(s)	368
PpsI	GAGTC	1 cut(s)	368
Psp6I	CCWGG	3 cut(s)	138, 224, 549
PspGI	CCWGG	3 cut(s)	138, 224, 549
PstI	CTGCAG	1 cut(s)	669
PstNI	CAGNNNCTG	1 cut(s)	472
PsyI	GACNNNGTC	1 cut(s)	117
SaqAI	TTAA	3 cut(s)	509, 654, 672
SatI	GCNGC	5 cut(s)	27, 159, 171, 561, 660
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	3 cut(s)	140, 226, 551
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	8 cut(s)	243, 400, 520, 552, 569, 624, 661, 679
SfaNI	GCATC	4 cut(s)	52, 268, 547, 639
SfcI	CTRYAG	1 cut(s)	665
SgrAI	CRCCGGYG	1 cut(s)	161
Sse9I	AATT	2 cut(s)	175, 494
SsiI	CCGC	4 cut(s)	27, 41, 159, 171
SspMI	CTAG	2 cut(s)	564, 681
StyD4I	CCNGG	3 cut(s)	138, 224, 549
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	2 cut(s)	243, 679
TaqI	TCGA	1 cut(s)	85
TasI	AATT	2 cut(s)	175, 494
TauI	GCSGC	3 cut(s)	29, 161, 173
TfiI	GAWTC	2 cut(s)	87, 297
Tru1I	TTAA	3 cut(s)	509, 654, 672
Tru9I	TTAA	3 cut(s)	509, 654, 672
TseFI	GTSAC	1 cut(s)	503
TseI	GCWGC	2 cut(s)	560, 659
Tsp45I	GTSAC	1 cut(s)	503
TspDTI	ATGAA	2 cut(s)	205, 407
TspGWI	ACGGA	2 cut(s)	169, 524
Tth111I	GACNNNGTC	1 cut(s)	117
Van91I	CCANNNNNTGG	1 cut(s)	274
XapI	RAATTY	1 cut(s)	494
XmiI	GTMKAC	1 cut(s)	198
XmnI	GAANNNNTTC	1 cut(s)	452
XspI	CTAG	2 cut(s)	564, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.