AT4G34840
ERF Family

Phosphorylase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010266
Physical Location & Seq
Forward (+)
16606215 .. 16608292
2078 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G34840.2

Sequence Viewer

Length: 765 bp
ATGGAAGGTGTTATGGGTCAGGTAGAGAAACGGCCGATTTCTACCATCGTCTTCATCGTTGCTATGCAAAAGGAAGCTCAGCCTCTGATCAACAGATTACGCCTCGTTGAAGAAGTTAATACTCCGTTTCCAAAAGAGGTGACTTGGATTATGTTTAAGGGAATGTATAAAGACTTGAACATCAATATAGTGTGTCCTGGAAAAGATTCAACTCTTGGGGTTGAGAGTGTTGGCACAGTTCCTGCATCACTCGTGACTTATGCTTCCATTCTAGCAATTCAACCAGACTTAATCATTAATGCGGGAACCGCTGGTGGCTTTAAGGCCAAAGGAGCATGTATTAGCGATGTTTATGTTGTCTCTACTGTTGCTTTCCATGACAGAAGAATACCTGTTCCTGTCCTTGATATATATGGTGTTGGTATGCGGAACACCTTCCCCACACCCAACCTTATAAAGGAGCTGAACCTAAAGGTGGGAAGATTATCCACTGGCGATTCTATGGATATGTCTCCACATGACGAAGAATCCATCACAGCAAATGATGCTACAGTTAAAGATATGGAGGGAGCAGCAGTGGCCTATGTGGCTGATATCTTTAAAGTGCCTACGATTCTAATAAAAGGTGTGACTGATATTGTGGATGGCAATAGACCAACTTCTGAAGAATTTTTGGAGAACTTAGCTGCAGTCACTGCCAAACTTGATGAGTCACTTACCAAAGTGATTGACTTCATCAGTGGGAAATGTCTCTCAGACCTCTAA

Protein Analysis

254

Amino Acids

27.46

Weight (kDa)

4.89

Isoelectric Point (pI)

31.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 1 - 222 3.2e-27 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34840 AT4G34840 AT4G34840 AT4G34840 AT4G34840 AT4G38800
fragaria_vesca FvH4_2g02150
malus_domestica MD10G1116600.v1.1
prunus_persica Prupe.8G159400_v2.0.a1 Prupe.8G159500_v2.0.a1
pyrus_communis pycom10g10140
rosa_chinensis RchiOBHm_Chr6g0245651
rosa_laevigata RLG00000015296
rosa_multiflora Rmu_sc0016035.1_g000004
rosa_roxburghii Rroxscaffold_7G00215150
rosa_rugosa Rorug05G0515300
rosa_samantha Rh6AG030000 Rh6BG027400 Rh6CG026700 Rh6DG026100
rosa_wichuraiana Rw6G002570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 455
AciI CCGC 3 cut(s) 302, 309, 427
AcoI YGGCCR 1 cut(s) 32
AcsI RAATTY 1 cut(s) 668
AcuI CTGAAG 1 cut(s) 684
AfiI CCNNNNNNNGG 2 cut(s) 457, 475
AgsI TTSAA 4 cut(s) 110, 178, 210, 281
AjnI CCWGG 1 cut(s) 196
AluBI AGCT 3 cut(s) 77, 463, 686
AluI AGCT 3 cut(s) 77, 463, 686
Alw26I GTCTC 3 cut(s) 364, 516, 755
AlwNI CAGNNNCTG 3 cut(s) 85, 242, 695
AoxI GGCC 3 cut(s) 32, 324, 579
ApeKI GCWGC 2 cut(s) 572, 686
ApoI RAATTY 1 cut(s) 668
AseI ATTAAT 1 cut(s) 297
Asp700I GAANNNNTTC 2 cut(s) 205, 434
AsuHPI GGTGA 1 cut(s) 151
BauI CACGAG 1 cut(s) 251
BbsI GAAGAC 1 cut(s) 43
BbvI GCAGC 2 cut(s) 584, 673
BccI CCATC 3 cut(s) 53, 539, 638
BceAI ACGGC 1 cut(s) 47
BciT130I CCWGG 1 cut(s) 198
BclI TGATCA 1 cut(s) 87
BcoDI GTCTC 3 cut(s) 364, 516, 755
BfaI CTAG 1 cut(s) 272
BfmI CTRYAG 2 cut(s) 549, 687
BglI GCCNNNNNGGC 1 cut(s) 587
BisI GCNGC 2 cut(s) 573, 687
BlpI GCTNAGC 1 cut(s) 78
BlsI GCNGC 2 cut(s) 574, 688
Bme1390I CCNGG 1 cut(s) 198
BmiI GGNNCC 1 cut(s) 307
BmrFI CCNGG 1 cut(s) 198
BmsI GCATC 2 cut(s) 254, 535
BpiI GAAGAC 1 cut(s) 43
Bpu1102I GCTNAGC 1 cut(s) 78
BsaXI ACNNNNNCTCC 2 cut(s) 561, 591
Bsc4I CCNNNNNNNGG 2 cut(s) 457, 475
Bse1I ACTGG 1 cut(s) 496
BseBI CCWGG 1 cut(s) 198
BseGI GGATG 1 cut(s) 649
BseLI CCNNNNNNNGG 2 cut(s) 457, 475
BseMII CTCAG 1 cut(s) 92
BseNI ACTGG 1 cut(s) 496
BseX3I CGGCCG 1 cut(s) 32
BseXI GCAGC 2 cut(s) 584, 673
Bsh1285I CGRYCG 1 cut(s) 35
BshFI GGCC 3 cut(s) 34, 326, 581
BsiEI CGRYCG 1 cut(s) 35
BslI CCNNNNNNNGG 2 cut(s) 457, 475
BsmAI GTCTC 3 cut(s) 364, 516, 755
BsnI GGCC 3 cut(s) 34, 326, 581
Bsp143I GATC 1 cut(s) 87
Bsp1720I GCTNAGC 1 cut(s) 78
BspACI CCGC 3 cut(s) 302, 309, 427
BspANI GGCC 3 cut(s) 34, 326, 581
BspCNI CTCAG 1 cut(s) 91
BspLI GGNNCC 1 cut(s) 307
BspMAI CTGCAG 1 cut(s) 691
BsrI ACTGG 1 cut(s) 496
BssMI GATC 1 cut(s) 87
BssSI CACGAG 1 cut(s) 251
Bst2BI CACGAG 1 cut(s) 251
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 3 cut(s) 238, 367, 553
BstAPI GCANNNNNTGC 2 cut(s) 545, 695
BstDEI CTNAG 3 cut(s) 78, 682, 754
BstENI CCTNNNNNAGG 1 cut(s) 455
BstF5I GGATG 1 cut(s) 649
BstKTI GATC 1 cut(s) 90
BstMAI GTCTC 3 cut(s) 364, 516, 755
BstMBI GATC 1 cut(s) 87
BstMCI CGRYCG 1 cut(s) 35
BstMWI GCNNNNNNNGC 6 cut(s) 308, 332, 545, 578, 587, 695
BstNI CCWGG 1 cut(s) 198
BstNSI RCATGY 1 cut(s) 339
BstSCI CCNGG 1 cut(s) 196
BstSFI CTRYAG 2 cut(s) 549, 687
BstV1I GCAGC 2 cut(s) 584, 673
BstV2I GAAGAC 1 cut(s) 43
BstZI CGGCCG 1 cut(s) 32
BsuRI GGCC 3 cut(s) 34, 326, 581
BtgZI GCGATG 1 cut(s) 360
BtsCI GGATG 1 cut(s) 649
BtsI GCAGTG 2 cut(s) 582, 693
BtsIMutI CAGTG 4 cut(s) 489, 582, 693, 745
CaiI CAGNNNCTG 3 cut(s) 85, 242, 695
CviAII CATG 3 cut(s) 336, 377, 518
CviJI RGCY 9 cut(s) 34, 77, 82, 318, 326, 463, 581, 590, 686
CviKI_1 RGCY 9 cut(s) 34, 77, 82, 318, 326, 463, 581, 590, 686
DdeI CTNAG 3 cut(s) 78, 682, 754
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
DraI TTTAAA 1 cut(s) 601
EaeI YGGCCR 1 cut(s) 32
EagI CGGCCG 1 cut(s) 32
EclXI CGGCCG 1 cut(s) 32
Eco32I GATATC 1 cut(s) 595
Eco52I CGGCCG 1 cut(s) 32
Eco57I CTGAAG 1 cut(s) 684
EcoNI CCTNNNNNAGG 1 cut(s) 455
EcoRII CCWGG 1 cut(s) 196
EcoRV GATATC 1 cut(s) 595
FaeI CATG 3 cut(s) 339, 380, 521
FatI CATG 3 cut(s) 335, 376, 517
FauI CCCGC 1 cut(s) 295
FbaI TGATCA 1 cut(s) 87
Fnu4HI GCNGC 2 cut(s) 573, 687
FokI GGATG 1 cut(s) 656
Fsp4HI GCNGC 2 cut(s) 573, 687
FspBI CTAG 1 cut(s) 272
GluI GCNGC 2 cut(s) 573, 687
HaeIII GGCC 3 cut(s) 34, 326, 581
Hin1II CATG 3 cut(s) 339, 380, 521
HinfI GANTC 5 cut(s) 206, 497, 527, 613, 710
HphI GGTGA 1 cut(s) 151
Hpy188I TCNGA 3 cut(s) 87, 664, 757
Hpy188III TCNNGA 1 cut(s) 253
HpyAV CCTTC 1 cut(s) 445
HpyCH4III ACNGT 3 cut(s) 238, 367, 553
HpyCH4V TGCA 3 cut(s) 67, 245, 689
HpyF10VI GCNNNNNNNGC 6 cut(s) 308, 332, 545, 578, 587, 695
HpyF3I CTNAG 3 cut(s) 78, 682, 754
Hsp92II CATG 3 cut(s) 339, 380, 521
Ksp22I TGATCA 1 cut(s) 87
Kzo9I GATC 1 cut(s) 87
LmnI GCTCC 3 cut(s) 332, 460, 569
LpnPI CCDG 9 cut(s) 5, 183, 210, 255, 297, 297, 405, 411, 477
Lsp1109I GCAGC 2 cut(s) 584, 673
LweI GCATC 2 cut(s) 254, 535
MaeI CTAG 1 cut(s) 272
MaeIII GTNAC 5 cut(s) 139, 253, 628, 691, 711
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MboII GAAGA 6 cut(s) 43, 122, 396, 492, 536, 677
MluCI AATT 2 cut(s) 276, 668
MlyI GAGTC 1 cut(s) 719
MnlI CCTC 4 cut(s) 93, 113, 130, 559
MroXI GAANNNNTTC 2 cut(s) 205, 434
MseI TTAA 7 cut(s) 117, 156, 290, 297, 321, 555, 600
MspA1I CMGCKG 1 cut(s) 311
MspR9I CCNGG 1 cut(s) 198
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 6 cut(s) 308, 332, 545, 578, 587, 695
NdeII GATC 1 cut(s) 87
NlaIII CATG 3 cut(s) 339, 380, 521
NlaIV GGNNCC 1 cut(s) 307
NmuCI GTSAC 5 cut(s) 139, 253, 628, 691, 711
NspI RCATGY 1 cut(s) 339
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PdmI GAANNNNTTC 2 cut(s) 205, 434
PfeI GAWTC 4 cut(s) 206, 497, 527, 613
PfoI TCCNGGA 1 cut(s) 196
PkrI GCNGC 2 cut(s) 574, 688
PleI GAGTC 1 cut(s) 718
PpsI GAGTC 1 cut(s) 718
PshBI ATTAAT 1 cut(s) 297
PsiI TTATAA 1 cut(s) 455
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspN4I GGNNCC 1 cut(s) 307
PstI CTGCAG 1 cut(s) 691
PstNI CAGNNNCTG 3 cut(s) 85, 242, 695
SaqAI TTAA 7 cut(s) 117, 156, 290, 297, 321, 555, 600
SatI GCNGC 2 cut(s) 573, 687
Sau3AI GATC 1 cut(s) 87
SchI GAGTC 1 cut(s) 719
ScrFI CCNGG 1 cut(s) 198
SfaNI GCATC 2 cut(s) 254, 535
SfcI CTRYAG 2 cut(s) 549, 687
Sse9I AATT 2 cut(s) 276, 668
SsiI CCGC 3 cut(s) 302, 309, 427
SspMI CTAG 1 cut(s) 272
StyD4I CCNGG 1 cut(s) 196
TaaI ACNGT 3 cut(s) 238, 367, 553
TasI AATT 2 cut(s) 276, 668
TfiI GAWTC 4 cut(s) 206, 497, 527, 613
Tru1I TTAA 7 cut(s) 117, 156, 290, 297, 321, 555, 600
Tru9I TTAA 7 cut(s) 117, 156, 290, 297, 321, 555, 600
TscAI CASTG 4 cut(s) 496, 582, 700, 745
TseFI GTSAC 5 cut(s) 139, 253, 628, 691, 711
TseI GCWGC 2 cut(s) 572, 686
Tsp45I GTSAC 5 cut(s) 139, 253, 628, 691, 711
TspDTI ATGAA 2 cut(s) 43, 724
TspGWI ACGGA 1 cut(s) 114
TspRI CASTG 4 cut(s) 496, 582, 700, 745
VspI ATTAAT 1 cut(s) 297
XagI CCTNNNNNAGG 1 cut(s) 455
XapI RAATTY 1 cut(s) 668
XceI RCATGY 1 cut(s) 339
XmnI GAANNNNTTC 2 cut(s) 205, 434
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.