Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010266

Physical Location & Seq

Genomic Coordinates Forward (+)

16859301 .. 16862361

Gene Structure 3061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G159400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTCTCCTCACGGCGACAAATCGGACGCTGCAGAGGAAGCCTTGGTTGCTGAAACTGAGAAGCGCCCCATTTCCACCATCCTCATCGTCATCGCTATGCAGACTGAAGCTCTTCCTGTGGTGAACAAGTTCAACCTCACAGAGGACCCTGACTCCGTGTTCCCAAAAGGGGTCCCTTGGGTCCGGTATCATGGGTTTTACAAAGATCTTCATATTAATTTAGTTTGGCCTGGAAAAGATTCATCTTTAGGAGTTGATTGTGTAGGCACAGTTTCTGCGTCTCTTGTGGCCTATGCTGCCATTCAAGCGTTACAGCCAGACCTAATTATCAATGCAGGCACTGCTGGTGGCTTTAAGGCCAAAGGAGCAGGCATCGGTGATGTGTATCTCGCATGTGATGTTGCTTACCATGATAGAAGGATACCCATTCCTGTGTTTGATCTATATGGAGTTGGTTTACGACAAGCCTGTGTATCACCCAATCTTCAAAAGGAACTTAACCTAAAGGTTGGTAAACTGTCTACCGGCAACTCTCTAGATATGTCCCCGCAGGATGAAGCATCGATCATTGCAAATGATGCTACAATTAAAGACATGGAGGGTGCTGCTGTTGCCTATGTGGCAGATCTGTTGAAAGTCCCAATCATATTTGTTAAAGCTGTGACTGATGTAGTAGATGGTGAAAAACCAACTGCAGAAGAATTCTTGCAAAATTTGTCTGCAGTAACTGCTGCTCTTGAAGAGAAGATCACCCAAGTTATCGAGTTTATTAACGGAAAGTGCCTCTCTGATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008477 GO:0008652 GO:0008930 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009888 GO:0009987 GO:0010087 GO:0016053 GO:0016787 GO:0016798 GO:0016799 GO:0017144 GO:0019509 GO:0019752 GO:0032502 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0046394 GO:0048856 GO:0071265 GO:0071267 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

B3 PNP_UDP_1

Protein Analysis

266

Amino Acids

28.31

Weight (kDa)

4.69

Isoelectric Point (pI)

40.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34840 AT4G34840 AT4G34840 AT4G34840 AT4G34840 AT4G38800
fragaria_vesca	FvH4_2g02150
malus_domestica	MD10G1116600.v1.1
prunus_persica	Prupe.8G159400_v2.0.a1 Prupe.8G159500_v2.0.a1
pyrus_communis	pycom10g10140
rosa_chinensis	RchiOBHm_Chr6g0245651
rosa_laevigata	RLG00000015296
rosa_multiflora	Rmu_sc0016035.1_g000004
rosa_roxburghii	Rroxscaffold_7G00215150
rosa_rugosa	Rorug05G0515300
rosa_samantha	Rh6AG030000 Rh6BG027400 Rh6CG026700 Rh6DG026100
rosa_wichuraiana	Rw6G002570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	521
AciI	CCGC	1 cut(s)	548
AcsI	RAATTY	2 cut(s)	701, 712
AcuI	CTGAAG	1 cut(s)	126
AfiI	CCNNNNNNNGG	2 cut(s)	142, 169
AgsI	TTSAA	5 cut(s)	133, 305, 488, 634, 740
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	2 cut(s)	110, 659
AluI	AGCT	2 cut(s)	110, 659
Alw26I	GTCTC	2 cut(s)	9, 285
AlwNI	CAGNNNCTG	3 cut(s)	275, 341, 728
AoxI	GGCC	3 cut(s)	227, 288, 357
ApeKI	GCWGC	4 cut(s)	29, 296, 605, 731
ApoI	RAATTY	2 cut(s)	701, 712
AseI	ATTAAT	1 cut(s)	216
Asp700I	GAANNNNTTC	3 cut(s)	111, 128, 238
AspLEI	GCGC	1 cut(s)	66
AspS9I	GGNCC	3 cut(s)	145, 172, 181
AsuHPI	GGTGA	5 cut(s)	133, 389, 468, 692, 742
AvaII	GGWCC	3 cut(s)	145, 172, 181
BbvI	GCAGC	4 cut(s)	16, 283, 592, 718
BccI	CCATC	2 cut(s)	86, 671
BceAI	ACGGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	231
BciVI	GTATCC	1 cut(s)	414
BcoDI	GTCTC	2 cut(s)	9, 285
BfaI	CTAG	1 cut(s)	536
BfmI	CTRYAG	3 cut(s)	30, 693, 720
BfoI	RGCGCY	1 cut(s)	67
BfuI	GTATCC	1 cut(s)	414
BglI	GCCNNNNNGGC	1 cut(s)	620
BglII	AGATCT	2 cut(s)	205, 625
BisI	GCNGC	4 cut(s)	30, 297, 606, 732
BlsI	GCNGC	4 cut(s)	31, 298, 607, 733
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	3 cut(s)	145, 172, 181
BmgT120I	GGNCC	3 cut(s)	145, 172, 181
BmiI	GGNNCC	4 cut(s)	147, 173, 174, 182
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	3 cut(s)	381, 568, 569
Bsa29I	ATCGAT	1 cut(s)	563
BsaBI	GATNNNNATC	1 cut(s)	384
BsaJI	CCNNGG	2 cut(s)	42, 176
BsaWI	WCCGGW	1 cut(s)	183
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 169
Bse118I	RCCGGY	1 cut(s)	524
Bse3DI	GCAATG	1 cut(s)	567
Bse8I	GATNNNNATC	1 cut(s)	384
BseBI	CCWGG	1 cut(s)	231
BseCI	ATCGAT	1 cut(s)	563
BseDI	CCNNGG	2 cut(s)	42, 176
BseGI	GGATG	2 cut(s)	78, 559
BseJI	GATNNNNATC	1 cut(s)	384
BseLI	CCNNNNNNNGG	2 cut(s)	142, 169
BseMI	GCAATG	1 cut(s)	567
BseMII	CTCAG	1 cut(s)	48
BseXI	GCAGC	4 cut(s)	16, 283, 592, 718
BshFI	GGCC	3 cut(s)	229, 290, 359
BshVI	ATCGAT	1 cut(s)	563
BsiSI	CCGG	2 cut(s)	184, 525
BslFI	GGGAC	3 cut(s)	158, 529, 623
BslI	CCNNNNNNNGG	2 cut(s)	142, 169
BsmAI	GTCTC	2 cut(s)	9, 285
BsmBI	CGTCTC	1 cut(s)	285
BsmFI	GGGAC	3 cut(s)	158, 529, 623
BsnI	GGCC	3 cut(s)	229, 290, 359
Bsp143I	GATC	6 cut(s)	205, 439, 564, 625, 747, 790
BspACI	CCGC	1 cut(s)	548
BspANI	GGCC	3 cut(s)	229, 290, 359
BspCNI	CTCAG	1 cut(s)	49
BspDI	ATCGAT	1 cut(s)	563
BspLI	GGNNCC	4 cut(s)	147, 173, 174, 182
BspMAI	CTGCAG	3 cut(s)	34, 697, 724
BspQI	GCTCTTC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	567
BsrFI	RCCGGY	1 cut(s)	524
BssAI	RCCGGY	1 cut(s)	524
BssECI	CCNNGG	2 cut(s)	42, 176
BssMI	GATC	6 cut(s)	205, 439, 564, 625, 747, 790
BssT1I	CCWWGG	2 cut(s)	42, 176
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	2 cut(s)	271, 519
Bst6I	CTCTTC	2 cut(s)	117, 735
BstAPI	GCANNNNNTGC	3 cut(s)	341, 578, 728
BstC8I	GCNNGC	2 cut(s)	337, 370
BstDEI	CTNAG	1 cut(s)	57
BstENI	CCTNNNNNAGG	1 cut(s)	140
BstF5I	GGATG	2 cut(s)	78, 559
BstH2I	RGCGCY	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	6 cut(s)	208, 442, 567, 628, 750, 793
BstMAI	GTCTC	2 cut(s)	9, 285
BstMBI	GATC	6 cut(s)	205, 439, 564, 625, 747, 790
BstNI	CCWGG	1 cut(s)	231
BstNSI	RCATGY	1 cut(s)	396
BstSCI	CCNGG	1 cut(s)	229
BstSFI	CTRYAG	3 cut(s)	30, 693, 720
BstV1I	GCAGC	4 cut(s)	16, 283, 592, 718
BstX2I	RGATCY	2 cut(s)	205, 625
BstYI	RGATCY	2 cut(s)	205, 625
Bsu15I	ATCGAT	1 cut(s)	563
BsuI	GTATCC	1 cut(s)	414
BsuRI	GGCC	3 cut(s)	229, 290, 359
BsuTUI	ATCGAT	1 cut(s)	563
BtgZI	GCGATG	1 cut(s)	76
BtsCI	GGATG	2 cut(s)	78, 559
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	339
Cac8I	GCNNGC	2 cut(s)	337, 370
CaiI	CAGNNNCTG	3 cut(s)	275, 341, 728
CfoI	GCGC	1 cut(s)	66
Cfr10I	RCCGGY	1 cut(s)	524
Cfr13I	GGNCC	3 cut(s)	145, 172, 181
ClaI	ATCGAT	1 cut(s)	563
CseI	GACGC	2 cut(s)	35, 267
CviAII	CATG	4 cut(s)	191, 393, 410, 595
CviJI	RGCY	9 cut(s)	41, 110, 229, 290, 316, 351, 359, 467, 659
CviKI_1	RGCY	9 cut(s)	41, 110, 229, 290, 316, 351, 359, 467, 659
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	6 cut(s)	207, 441, 566, 627, 749, 792
DpnII	GATC	6 cut(s)	205, 439, 564, 625, 747, 790
Eam1104I	CTCTTC	2 cut(s)	117, 735
EarI	CTCTTC	2 cut(s)	117, 735
Eco130I	CCWWGG	2 cut(s)	42, 176
Eco47I	GGWCC	3 cut(s)	145, 172, 181
Eco57I	CTGAAG	1 cut(s)	126
EcoNI	CCTNNNNNAGG	1 cut(s)	140
EcoO109I	RGGNCCY	2 cut(s)	145, 172
EcoRI	GAATTC	1 cut(s)	701
EcoRII	CCWGG	1 cut(s)	229
EcoT14I	CCWWGG	2 cut(s)	42, 176
ErhI	CCWWGG	2 cut(s)	42, 176
Esp3I	CGTCTC	1 cut(s)	285
FaeI	CATG	4 cut(s)	194, 396, 413, 598
FaqI	GGGAC	3 cut(s)	158, 529, 623
FatI	CATG	4 cut(s)	190, 392, 409, 594
FauI	CCCGC	1 cut(s)	555
FblI	GTMKAC	1 cut(s)	521
Fnu4HI	GCNGC	4 cut(s)	30, 297, 606, 732
FokI	GGATG	2 cut(s)	65, 566
Fsp4HI	GCNGC	4 cut(s)	30, 297, 606, 732
FspBI	CTAG	1 cut(s)	536
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	4 cut(s)	30, 297, 606, 732
HaeII	RGCGCY	1 cut(s)	67
HaeIII	GGCC	3 cut(s)	229, 290, 359
HapII	CCGG	2 cut(s)	184, 525
HgaI	GACGC	2 cut(s)	35, 267
HhaI	GCGC	1 cut(s)	66
Hin1II	CATG	4 cut(s)	194, 396, 413, 598
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HinfI	GANTC	2 cut(s)	152, 239
HpaII	CCGG	2 cut(s)	184, 525
HphI	GGTGA	5 cut(s)	133, 389, 468, 692, 742
Hpy166II	GTNNAC	4 cut(s)	124, 458, 515, 522
Hpy188I	TCNGA	2 cut(s)	25, 790
Hpy188III	TCNNGA	2 cut(s)	536, 737
Hpy8I	GTNNAC	4 cut(s)	124, 458, 515, 522
HpyAV	CCTTC	1 cut(s)	411
HpyCH4III	ACNGT	2 cut(s)	271, 519
HpyCH4V	TGCA	7 cut(s)	32, 100, 335, 572, 695, 709, 722
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	4 cut(s)	194, 396, 413, 598
HspAI	GCGC	1 cut(s)	64
KflI	GGGWCCC	1 cut(s)	172
Kzo9I	GATC	6 cut(s)	205, 439, 564, 625, 747, 790
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	365
Lsp1109I	GCAGC	4 cut(s)	16, 283, 592, 718
LweI	GCATC	3 cut(s)	381, 568, 569
MaeI	CTAG	1 cut(s)	536
MaeIII	GTNAC	3 cut(s)	309, 661, 724
MalI	GATC	6 cut(s)	207, 441, 566, 627, 749, 792
MboI	GATC	6 cut(s)	205, 439, 564, 625, 747, 790
MboII	GAAGA	6 cut(s)	104, 200, 476, 710, 752, 757
MflI	RGATCY	2 cut(s)	205, 625
MluCI	AATT	5 cut(s)	217, 324, 585, 701, 712
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	7 cut(s)	18, 28, 92, 136, 146, 592, 794
MroXI	GAANNNNTTC	3 cut(s)	111, 128, 238
MseI	TTAA	6 cut(s)	216, 354, 498, 588, 654, 771
MslI	CAYNNNNRTG	2 cut(s)	95, 431
MspI	CCGG	2 cut(s)	184, 525
MspR9I	CCNGG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	231
NdeII	GATC	6 cut(s)	205, 439, 564, 625, 747, 790
NlaIII	CATG	4 cut(s)	194, 396, 413, 598
NlaIV	GGNNCC	4 cut(s)	147, 173, 174, 182
NmuCI	GTSAC	1 cut(s)	661
NspI	RCATGY	1 cut(s)	396
PciSI	GCTCTTC	1 cut(s)	117
PdmI	GAANNNNTTC	3 cut(s)	111, 128, 238
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	4 cut(s)	31, 298, 607, 733
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
PpuMI	RGGWCCY	2 cut(s)	145, 172
PshBI	ATTAAT	1 cut(s)	216
Psp5II	RGGWCCY	2 cut(s)	145, 172
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	4 cut(s)	147, 173, 174, 182
PspPI	GGNCC	3 cut(s)	145, 172, 181
PspPPI	RGGWCCY	2 cut(s)	145, 172
PstI	CTGCAG	3 cut(s)	34, 697, 724
PstNI	CAGNNNCTG	3 cut(s)	275, 341, 728
PsuI	RGATCY	2 cut(s)	205, 625
RseI	CAYNNNNRTG	2 cut(s)	95, 431
SapI	GCTCTTC	1 cut(s)	117
SaqAI	TTAA	6 cut(s)	216, 354, 498, 588, 654, 771
SatI	GCNGC	4 cut(s)	30, 297, 606, 732
Sau3AI	GATC	6 cut(s)	205, 439, 564, 625, 747, 790
Sau96I	GGNCC	3 cut(s)	145, 172, 181
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	231
SetI	ASST	6 cut(s)	112, 138, 324, 504, 510, 661
SfaNI	GCATC	3 cut(s)	381, 568, 569
SfcI	CTRYAG	3 cut(s)	30, 693, 720
SinI	GGWCC	3 cut(s)	145, 172, 181
SmiMI	CAYNNNNRTG	2 cut(s)	95, 431
Sse9I	AATT	5 cut(s)	217, 324, 585, 701, 712
SsiI	CCGC	1 cut(s)	548
SspMI	CTAG	1 cut(s)	536
StyD4I	CCNGG	1 cut(s)	229
StyI	CCWWGG	2 cut(s)	42, 176
TaaI	ACNGT	2 cut(s)	271, 519
TaqI	TCGA	2 cut(s)	563, 762
TasI	AATT	5 cut(s)	217, 324, 585, 701, 712
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	6 cut(s)	216, 354, 498, 588, 654, 771
Tru9I	TTAA	6 cut(s)	216, 354, 498, 588, 654, 771
TscAI	CASTG	1 cut(s)	346
TseFI	GTSAC	1 cut(s)	661
TseI	GCWGC	4 cut(s)	29, 296, 605, 731
Tsp45I	GTSAC	1 cut(s)	661
TspDTI	ATGAA	3 cut(s)	200, 231, 570
TspGWI	ACGGA	2 cut(s)	145, 789
TspRI	CASTG	1 cut(s)	346
VpaK11BI	GGWCC	3 cut(s)	145, 172, 181
VspI	ATTAAT	1 cut(s)	216
XagI	CCTNNNNNAGG	1 cut(s)	140
XapI	RAATTY	2 cut(s)	701, 712
XbaI	TCTAGA	1 cut(s)	535
XceI	RCATGY	1 cut(s)	396
XmiI	GTMKAC	1 cut(s)	521
XmnI	GAANNNNTTC	3 cut(s)	111, 128, 238
XspI	CTAG	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.