Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016035.1

Orthogroup ID

OG0010266

Physical Location & Seq

Genomic Coordinates Forward (+)

15287 .. 17597

Gene Structure 2311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016035.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atgattaaactatcaactgccaagcagttgctcttttctcggaaatttaactacctcaaaatcttcatatgctatgtttcctacatggtgacttgggttgattgtgtaggcacagttcctgcatctcttgtgacctatgcttccattcaagcattacagccagacctaattatcaatgcaggcactgctggtggctctaaggacaaaggagcatgcattggtgacatttatctcgcatctgatgttgcttaccatgatagaaggatacctattcctgtttttgatttatacggagttggcttgcgactcgcctacgcaacacccagtcttcaaaaggaacttgagctaaaggttggcaagctgtctactggcaactctttggatatgtctccacaggatgaagcatcaatagttgcaaatgatgctaccgttaaagacatggagggtgcagccgttgcctatgtggcagatctgttgaaagtcccagcaatatttgttaaagctgtgactgatatagtcgatggtgaaaaaccaaccgcagaagaattcatgcaaaatttggttgcagtaactgctgcacttgaacaggcgatcaccaaagttattgattttattaacggaaagtgcctctccgaactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008477 GO:0008652 GO:0008930 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009888 GO:0009987 GO:0010087 GO:0016053 GO:0016787 GO:0016798 GO:0016799 GO:0017144 GO:0019509 GO:0019752 GO:0032502 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0046394 GO:0048856 GO:0071265 GO:0071267 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

B3 PNP_UDP_1

Protein Analysis

213

Amino Acids

22.95

Weight (kDa)

4.92

Isoelectric Point (pI)

24.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34840 AT4G34840 AT4G34840 AT4G34840 AT4G34840 AT4G38800
fragaria_vesca	FvH4_2g02150
malus_domestica	MD10G1116600.v1.1
prunus_persica	Prupe.8G159400_v2.0.a1 Prupe.8G159500_v2.0.a1
pyrus_communis	pycom10g10140
rosa_chinensis	RchiOBHm_Chr6g0245651
rosa_laevigata	RLG00000015296
rosa_multiflora	Rmu_sc0016035.1_g000004
rosa_roxburghii	Rroxscaffold_7G00215150
rosa_rugosa	Rorug05G0515300
rosa_samantha	Rh6AG030000 Rh6BG027400 Rh6CG026700 Rh6DG026100
rosa_wichuraiana	Rw6G002570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	365
AciI	CCGC	1 cut(s)	537
AcsI	RAATTY	3 cut(s)	44, 545, 556
AgsI	TTSAA	4 cut(s)	149, 332, 478, 584
AluBI	AGCT	3 cut(s)	346, 361, 503
AluI	AGCT	3 cut(s)	346, 361, 503
Alw26I	GTCTC	1 cut(s)	393
AlwNI	CAGNNNCTG	3 cut(s)	119, 185, 572
ApeKI	GCWGC	2 cut(s)	449, 575
ApoI	RAATTY	3 cut(s)	44, 545, 556
AsuHPI	GGTGA	4 cut(s)	100, 233, 536, 586
BbsI	GAAGAC	1 cut(s)	320
BbvI	GCAGC	2 cut(s)	461, 562
BccI	CCATC	1 cut(s)	515
BceAI	ACGGC	1 cut(s)	437
BciVI	GTATCC	1 cut(s)	258
BcoDI	GTCTC	1 cut(s)	393
BfuI	GTATCC	1 cut(s)	258
BglI	GCCNNNNNGGC	1 cut(s)	464
BglII	AGATCT	1 cut(s)	469
BisI	GCNGC	2 cut(s)	450, 576
BlsI	GCNGC	2 cut(s)	451, 577
BmrI	ACTGGG	1 cut(s)	318
BmsI	GCATC	4 cut(s)	131, 245, 412, 413
BmuI	ACTGGG	1 cut(s)	318
BpiI	GAAGAC	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	362
Bse1I	ACTGG	2 cut(s)	324, 373
BseGI	GGATG	1 cut(s)	403
BseNI	ACTGG	2 cut(s)	324, 373
BseXI	GCAGC	2 cut(s)	461, 562
BseYI	CCCAGC	1 cut(s)	484
BsgI	GTGCAG	2 cut(s)	468, 561
BslFI	GGGAC	1 cut(s)	467
BsmAI	GTCTC	1 cut(s)	393
BsmFI	GGGAC	1 cut(s)	467
Bsp143I	GATC	2 cut(s)	469, 591
BspACI	CCGC	1 cut(s)	537
BsrI	ACTGG	2 cut(s)	324, 373
BssMI	GATC	2 cut(s)	469, 591
Bst4CI	ACNGT	2 cut(s)	115, 430
BstAPI	GCANNNNNTGC	4 cut(s)	185, 422, 455, 572
BstC8I	GCNNGC	4 cut(s)	181, 214, 302, 359
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	403
BstKTI	GATC	2 cut(s)	472, 594
BstMAI	GTCTC	1 cut(s)	393
BstMBI	GATC	2 cut(s)	469, 591
BstMWI	GCNNNNNNNGC	5 cut(s)	185, 422, 455, 464, 572
BstNSI	RCATGY	1 cut(s)	216
BstV1I	GCAGC	2 cut(s)	461, 562
BstV2I	GAAGAC	1 cut(s)	320
BstX2I	RGATCY	1 cut(s)	469
BstYI	RGATCY	1 cut(s)	469
BsuI	GTATCC	1 cut(s)	258
BtsCI	GGATG	1 cut(s)	403
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	4 cut(s)	181, 214, 302, 359
CaiI	CAGNNNCTG	3 cut(s)	119, 185, 572
CviAII	CATG	5 cut(s)	85, 213, 254, 439, 550
CviJI	RGCY	7 cut(s)	160, 195, 300, 346, 361, 452, 503
CviKI_1	RGCY	7 cut(s)	160, 195, 300, 346, 361, 452, 503
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	2 cut(s)	471, 593
DpnII	GATC	2 cut(s)	469, 591
EcoRI	GAATTC	1 cut(s)	545
EcoT22I	ATGCAT	1 cut(s)	218
FaeI	CATG	5 cut(s)	88, 216, 257, 442, 553
FaqI	GGGAC	1 cut(s)	467
FatI	CATG	5 cut(s)	84, 212, 253, 438, 549
FauNDI	CATATG	1 cut(s)	68
FblI	GTMKAC	1 cut(s)	365
Fnu4HI	GCNGC	2 cut(s)	450, 576
FokI	GGATG	1 cut(s)	410
Fsp4HI	GCNGC	2 cut(s)	450, 576
GluI	GCNGC	2 cut(s)	450, 576
GsaI	CCCAGC	1 cut(s)	488
Hin1II	CATG	5 cut(s)	88, 216, 257, 442, 553
HinfI	GANTC	1 cut(s)	306
HphI	GGTGA	4 cut(s)	100, 233, 536, 586
Hpy166II	GTNNAC	1 cut(s)	366
Hpy188I	TCNGA	3 cut(s)	42, 241, 634
Hpy8I	GTNNAC	1 cut(s)	366
HpyAV	CCTTC	1 cut(s)	255
HpyCH4III	ACNGT	2 cut(s)	115, 430
HpyCH4V	TGCA	8 cut(s)	122, 179, 216, 416, 449, 553, 566, 578
HpyF10VI	GCNNNNNNNGC	5 cut(s)	185, 422, 455, 464, 572
HpyF3I	CTNAG	1 cut(s)	198
Hsp92II	CATG	5 cut(s)	88, 216, 257, 442, 553
Kzo9I	GATC	2 cut(s)	469, 591
LmnI	GCTCC	1 cut(s)	209
Lsp1109I	GCAGC	2 cut(s)	461, 562
LweI	GCATC	4 cut(s)	131, 245, 412, 413
MaeIII	GTNAC	5 cut(s)	88, 130, 221, 505, 568
MalI	GATC	2 cut(s)	471, 593
MboI	GATC	2 cut(s)	469, 591
MboII	GAAGA	3 cut(s)	55, 320, 554
MflI	RGATCY	1 cut(s)	469
MluCI	AATT	4 cut(s)	44, 168, 545, 556
MlyI	GAGTC	1 cut(s)	300
MnlI	CCTC	3 cut(s)	65, 436, 638
Mph1103I	ATGCAT	1 cut(s)	218
MseI	TTAA	5 cut(s)	6, 48, 432, 498, 615
MwoI	GCNNNNNNNGC	5 cut(s)	185, 422, 455, 464, 572
NdeI	CATATG	1 cut(s)	68
NdeII	GATC	2 cut(s)	469, 591
NlaIII	CATG	5 cut(s)	88, 216, 257, 442, 553
NmuCI	GTSAC	4 cut(s)	88, 130, 221, 505
NsiI	ATGCAT	1 cut(s)	218
NspI	RCATGY	1 cut(s)	216
PaeI	GCATGC	1 cut(s)	216
PkrI	GCNGC	2 cut(s)	451, 577
PleI	GAGTC	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	300
PspFI	CCCAGC	1 cut(s)	484
PsrI	GAACNNNNNNTAC	2 cut(s)	99, 131
PstNI	CAGNNNCTG	3 cut(s)	119, 185, 572
PsuI	RGATCY	1 cut(s)	469
SaqAI	TTAA	5 cut(s)	6, 48, 432, 498, 615
SatI	GCNGC	2 cut(s)	450, 576
Sau3AI	GATC	2 cut(s)	469, 591
SchI	GAGTC	1 cut(s)	300
SetI	ASST	8 cut(s)	57, 137, 168, 271, 348, 354, 363, 505
SfaNI	GCATC	4 cut(s)	131, 245, 412, 413
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
SphI	GCATGC	1 cut(s)	216
Sse9I	AATT	4 cut(s)	44, 168, 545, 556
SsiI	CCGC	1 cut(s)	537
SspI	AATATT	1 cut(s)	492
TaaI	ACNGT	2 cut(s)	115, 430
TaqI	TCGA	1 cut(s)	519
TasI	AATT	4 cut(s)	44, 168, 545, 556
Tru1I	TTAA	5 cut(s)	6, 48, 432, 498, 615
Tru9I	TTAA	5 cut(s)	6, 48, 432, 498, 615
TscAI	CASTG	1 cut(s)	190
TseFI	GTSAC	4 cut(s)	88, 130, 221, 505
TseI	GCWGC	2 cut(s)	449, 575
Tsp45I	GTSAC	4 cut(s)	88, 130, 221, 505
TspDTI	ATGAA	3 cut(s)	55, 414, 538
TspGWI	ACGGA	2 cut(s)	306, 633
TspRI	CASTG	1 cut(s)	190
XapI	RAATTY	3 cut(s)	44, 545, 556
XceI	RCATGY	1 cut(s)	216
XmiI	GTMKAC	1 cut(s)	365
Zsp2I	ATGCAT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.