Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010266

Physical Location & Seq

Genomic Coordinates Reverse (-)

18113161 .. 18115176

Gene Structure 2016 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G38800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCTCCTCATGGAGATGGATTAAGTGACATCGAAGAACCTGAGGTCGATGCTCAATCGGAGATTCTTCGACCGATCTCCTCAGTCGTCTTCGTCATCGCTATGCAAGCGGAGGCTCTTCCTTTGGTCAACAAGTTCGGACTCTCTGAAACTACTGATTCGCCGCTTGGTAAAGGATTGCCCTGGGTTCTGTATCACGGCGTGCATAAAGATCTTCGAATCAATGTAGTTTGCCCCGGAAGAGATGCAGCTTTAGGGATCGATAGTGTTGGAACTGTTCCAGCTTCTCTCATAACTTTTGCTTCCATCCAAGCATTAAAACCTGACATCATAATCAATGCCGGAACCTGCGGTGGCTTCAAGGTCAAAGGAGCCAACATAGGCGATGTATTCCTTGTATCTGATGTTGTGTTTCATGATAGAAGAATACCAATTCCGATGTTTGATCTGTATGGAGTTGGTCTCCGTCAGGCATTCTCGACACCCAATCTCCTCAAGGAACTCAATTTGAAGATTGGCAGGTTATCTACTGGTGACTCGTTGGATATGTCCACGCAAGATGAAACATTGATCATTGCCAATGATGCTACGCTAAAGGACATGGAGGGTGCTGCCGTGGCGTATGTGGCTGATCTTCTGAAAATACCAGTCGTGTTCCTCAAAGCCGTGACCGATCTAGTGGACGGAGATAAACCTACAGCAGAAGAGTTCTTGCAGAACTTGACAGTTGTGACCGCTGCATTAGAGGGAACTGCTACTAAAGTGATCAACTTCATCAATGGGAGAAACCTTTCGGACCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008477 GO:0008652 GO:0008930 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009888 GO:0009987 GO:0010087 GO:0016020 GO:0016053 GO:0016787 GO:0016798 GO:0016799 GO:0017144 GO:0019509 GO:0019752 GO:0032502 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048856 GO:0071265 GO:0071267 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

B3 PNP_UDP_1

Protein Analysis

267

Amino Acids

28.45

Weight (kDa)

4.65

Isoelectric Point (pI)

30.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PNP_UDP_1	PF01048	29 - 256	9.9e-28	Phosphorylase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34840 AT4G34840 AT4G34840 AT4G34840 AT4G34840 AT4G38800
fragaria_vesca	FvH4_2g02150
malus_domestica	MD10G1116600.v1.1
prunus_persica	Prupe.8G159400_v2.0.a1 Prupe.8G159500_v2.0.a1
pyrus_communis	pycom10g10140
rosa_chinensis	RchiOBHm_Chr6g0245651
rosa_laevigata	RLG00000015296
rosa_multiflora	Rmu_sc0016035.1_g000004
rosa_roxburghii	Rroxscaffold_7G00215150
rosa_rugosa	Rorug05G0515300
rosa_samantha	Rh6AG030000 Rh6BG027400 Rh6CG026700 Rh6DG026100
rosa_wichuraiana	Rw6G002570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	356, 510
AciI	CCGC	4 cut(s)	110, 164, 351, 735
AclWI	GGATC	1 cut(s)	266
AdeI	CACNNNGTG	1 cut(s)	202
AgsI	TTSAA	2 cut(s)	361, 511
AjnI	CCWGG	1 cut(s)	182
AluBI	AGCT	2 cut(s)	251, 284
AluI	AGCT	2 cut(s)	251, 284
Alw26I	GTCTC	1 cut(s)	467
AlwI	GGATC	1 cut(s)	266
ApeKI	GCWGC	3 cut(s)	248, 611, 737
Asp700I	GAANNNNTTC	1 cut(s)	790
AspS9I	GGNCC	1 cut(s)	796
AsuC2I	CCSGG	1 cut(s)	237
AsuHPI	GGTGA	1 cut(s)	545
AsuII	TTCGAA	1 cut(s)	217
AvaII	GGWCC	1 cut(s)	796
AxyI	CCTNAGG	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	82
BbvI	GCAGC	3 cut(s)	260, 598, 724
BccI	CCATC	2 cut(s)	11, 314
BceAI	ACGGC	3 cut(s)	214, 599, 650
BciT130I	CCWGG	1 cut(s)	184
BclI	TGATCA	2 cut(s)	570, 765
BcnI	CCSGG	1 cut(s)	237
BcoDI	GTCTC	1 cut(s)	467
BfaI	CTAG	1 cut(s)	677
BfmI	CTRYAG	1 cut(s)	696
BfuAI	ACCTGC	2 cut(s)	356, 510
BglII	AGATCT	1 cut(s)	211
BisI	GCNGC	4 cut(s)	164, 249, 612, 738
BlsI	GCNGC	4 cut(s)	165, 250, 613, 739
Bme1390I	CCNGG	2 cut(s)	184, 237
Bme18I	GGWCC	1 cut(s)	796
BmgT120I	GGNCC	1 cut(s)	796
BmiI	GGNNCC	3 cut(s)	6, 346, 373
BmrFI	CCNGG	2 cut(s)	184, 237
BmsI	GCATC	3 cut(s)	40, 235, 574
BpiI	GAAGAC	1 cut(s)	82
BplI	GAGNNNNNCTC	2 cut(s)	447, 479
Bpu14I	TTCGAA	1 cut(s)	217
BpuEI	CTTGAG	1 cut(s)	479
BpuMI	CCSGG	1 cut(s)	237
Bsa29I	ATCGAT	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	467
BsaJI	CCNNGG	4 cut(s)	182, 183, 235, 615
BsaXI	ACNNNNNCTCC	2 cut(s)	474, 504
Bse1I	ACTGG	2 cut(s)	535, 647
Bse21I	CCTNAGG	1 cut(s)	42
Bse3DI	GCAATG	1 cut(s)	573
BseBI	CCWGG	1 cut(s)	184
BseCI	ATCGAT	1 cut(s)	261
BseDI	CCNNGG	4 cut(s)	182, 183, 235, 615
BseGI	GGATG	1 cut(s)	306
BseMI	GCAATG	1 cut(s)	573
BseMII	CTCAG	2 cut(s)	33, 96
BseNI	ACTGG	2 cut(s)	535, 647
BseRI	GAGGAG	2 cut(s)	70, 482
BseXI	GCAGC	3 cut(s)	260, 598, 724
Bsh1285I	CGRYCG	1 cut(s)	74
BshVI	ATCGAT	1 cut(s)	261
BsiEI	CGRYCG	1 cut(s)	74
BsiSI	CCGG	2 cut(s)	237, 342
BsmAI	GTCTC	1 cut(s)	467
BsmI	GAATGC	1 cut(s)	473
Bso31I	GGTCTC	1 cut(s)	467
Bsp119I	TTCGAA	1 cut(s)	217
Bsp143I	GATC	8 cut(s)	75, 211, 258, 445, 570, 631, 673, 765
BspACI	CCGC	4 cut(s)	110, 164, 351, 735
BspCNI	CTCAG	2 cut(s)	34, 95
BspDI	ATCGAT	1 cut(s)	261
BspHI	TCATGA	1 cut(s)	415
BspLI	GGNNCC	3 cut(s)	6, 346, 373
BspMI	ACCTGC	2 cut(s)	356, 510
BspPI	GGATC	1 cut(s)	266
BspQI	GCTCTTC	1 cut(s)	123
BspT104I	TTCGAA	1 cut(s)	217
BspTNI	GGTCTC	1 cut(s)	467
BsrDI	GCAATG	1 cut(s)	573
BsrI	ACTGG	2 cut(s)	535, 647
BssECI	CCNNGG	4 cut(s)	182, 183, 235, 615
BssMI	GATC	8 cut(s)	75, 211, 258, 445, 570, 631, 673, 765
Bst2UI	CCWGG	1 cut(s)	184
Bst4CI	ACNGT	2 cut(s)	277, 727
Bst6I	CTCTTC	3 cut(s)	123, 235, 699
BstBI	TTCGAA	1 cut(s)	217
BstC8I	GCNNGC	2 cut(s)	108, 203
BstDEI	CTNAG	2 cut(s)	42, 82
BstDSI	CCRYGG	1 cut(s)	615
BstF5I	GGATG	1 cut(s)	306
BstKTI	GATC	8 cut(s)	78, 214, 261, 448, 573, 634, 676, 768
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	8 cut(s)	75, 211, 258, 445, 570, 631, 673, 765
BstMCI	CGRYCG	1 cut(s)	74
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 584, 617, 626
BstNI	CCWGG	1 cut(s)	184
BstSCI	CCNGG	2 cut(s)	182, 235
BstSFI	CTRYAG	1 cut(s)	696
BstV1I	GCAGC	3 cut(s)	260, 598, 724
BstV2I	GAAGAC	1 cut(s)	82
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
Bsu15I	ATCGAT	1 cut(s)	261
Bsu36I	CCTNAGG	1 cut(s)	42
BsuTUI	ATCGAT	1 cut(s)	261
BtgI	CCRYGG	1 cut(s)	615
BtgZI	GCGATG	2 cut(s)	82, 399
BtsCI	GGATG	1 cut(s)	306
BveI	ACCTGC	2 cut(s)	356, 510
Cac8I	GCNNGC	2 cut(s)	108, 203
CciI	TCATGA	1 cut(s)	415
Cfr13I	GGNCC	1 cut(s)	796
ClaI	ATCGAT	1 cut(s)	261
CviAII	CATG	3 cut(s)	11, 416, 601
CviJI	RGCY	8 cut(s)	5, 116, 251, 284, 357, 374, 629, 665
CviKI_1	RGCY	8 cut(s)	5, 116, 251, 284, 357, 374, 629, 665
DdeI	CTNAG	2 cut(s)	42, 82
DpnI	GATC	8 cut(s)	77, 213, 260, 447, 572, 633, 675, 767
DpnII	GATC	8 cut(s)	75, 211, 258, 445, 570, 631, 673, 765
DraIII	CACNNNGTG	1 cut(s)	202
Eam1104I	CTCTTC	3 cut(s)	123, 235, 699
EarI	CTCTTC	3 cut(s)	123, 235, 699
Eco31I	GGTCTC	1 cut(s)	467
Eco47I	GGWCC	1 cut(s)	796
Eco81I	CCTNAGG	1 cut(s)	42
EcoRII	CCWGG	1 cut(s)	182
FaeI	CATG	3 cut(s)	14, 419, 604
FatI	CATG	3 cut(s)	10, 415, 600
FbaI	TGATCA	2 cut(s)	570, 765
Fnu4HI	GCNGC	4 cut(s)	164, 249, 612, 738
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	4 cut(s)	164, 249, 612, 738
FspBI	CTAG	1 cut(s)	677
GluI	GCNGC	4 cut(s)	164, 249, 612, 738
HapII	CCGG	2 cut(s)	237, 342
Hin1II	CATG	3 cut(s)	14, 419, 604
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	5 cut(s)	64, 141, 158, 219, 536
HpaII	CCGG	2 cut(s)	237, 342
HphI	GGTGA	1 cut(s)	545
Hpy166II	GTNNAC	3 cut(s)	130, 552, 682
Hpy188I	TCNGA	7 cut(s)	61, 140, 148, 403, 438, 639, 796
Hpy188III	TCNNGA	2 cut(s)	416, 478
Hpy8I	GTNNAC	3 cut(s)	130, 552, 682
HpyCH4III	ACNGT	2 cut(s)	277, 727
HpyCH4V	TGCA	5 cut(s)	106, 205, 248, 715, 740
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 584, 617, 626
HpyF3I	CTNAG	2 cut(s)	42, 82
Hsp92II	CATG	3 cut(s)	14, 419, 604
Ksp22I	TGATCA	2 cut(s)	570, 765
Kzo9I	GATC	8 cut(s)	75, 211, 258, 445, 570, 631, 673, 765
LguI	GCTCTTC	1 cut(s)	123
LmnI	GCTCC	2 cut(s)	10, 371
Lsp1109I	GCAGC	3 cut(s)	260, 598, 724
LweI	GCATC	3 cut(s)	40, 235, 574
MaeI	CTAG	1 cut(s)	677
MaeIII	GTNAC	4 cut(s)	26, 533, 667, 730
MalI	GATC	8 cut(s)	77, 213, 260, 447, 572, 633, 675, 767
MboI	GATC	8 cut(s)	75, 211, 258, 445, 570, 631, 673, 765
MflI	RGATCY	1 cut(s)	211
MluCI	AATT	2 cut(s)	432, 505
MlyI	GAGTC	2 cut(s)	135, 530
MmeI	TCCRAC	2 cut(s)	250, 522
MnlI	CCTC	8 cut(s)	18, 37, 91, 106, 503, 598, 668, 739
MroXI	GAANNNNTTC	1 cut(s)	790
MseI	TTAA	3 cut(s)	23, 317, 802
MslI	CAYNNNNRTG	2 cut(s)	15, 101
MspA1I	CMGCKG	1 cut(s)	737
MspI	CCGG	2 cut(s)	237, 342
MspR9I	CCNGG	2 cut(s)	184, 237
Mva1269I	GAATGC	1 cut(s)	473
MvaI	CCWGG	1 cut(s)	184
MwoI	GCNNNNNNNGC	4 cut(s)	107, 584, 617, 626
NciI	CCSGG	1 cut(s)	237
NdeII	GATC	8 cut(s)	75, 211, 258, 445, 570, 631, 673, 765
NlaIII	CATG	3 cut(s)	14, 419, 604
NlaIV	GGNNCC	3 cut(s)	6, 346, 373
NmuCI	GTSAC	4 cut(s)	26, 533, 667, 730
NspV	TTCGAA	1 cut(s)	217
PagI	TCATGA	1 cut(s)	415
PasI	CCCWGGG	1 cut(s)	183
PciSI	GCTCTTC	1 cut(s)	123
PctI	GAATGC	1 cut(s)	473
PdmI	GAANNNNTTC	1 cut(s)	790
PfeI	GAWTC	3 cut(s)	64, 158, 219
PkrI	GCNGC	4 cut(s)	165, 250, 613, 739
PleI	GAGTC	2 cut(s)	135, 530
PpsI	GAGTC	2 cut(s)	135, 530
Psp6I	CCWGG	1 cut(s)	182
PspGI	CCWGG	1 cut(s)	182
PspN4I	GGNNCC	3 cut(s)	6, 346, 373
PspPI	GGNCC	1 cut(s)	796
PsuI	RGATCY	1 cut(s)	211
RseI	CAYNNNNRTG	2 cut(s)	15, 101
SapI	GCTCTTC	1 cut(s)	123
SaqAI	TTAA	3 cut(s)	23, 317, 802
SatI	GCNGC	4 cut(s)	164, 249, 612, 738
Sau3AI	GATC	8 cut(s)	75, 211, 258, 445, 570, 631, 673, 765
Sau96I	GGNCC	1 cut(s)	796
SchI	GAGTC	2 cut(s)	135, 530
ScrFI	CCNGG	2 cut(s)	184, 237
SfaNI	GCATC	3 cut(s)	40, 235, 574
SfcI	CTRYAG	1 cut(s)	696
SfuI	TTCGAA	1 cut(s)	217
SinI	GGWCC	1 cut(s)	796
SmiMI	CAYNNNNRTG	2 cut(s)	15, 101
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
Sse9I	AATT	2 cut(s)	432, 505
SsiI	CCGC	4 cut(s)	110, 164, 351, 735
SspMI	CTAG	1 cut(s)	677
StyD4I	CCNGG	2 cut(s)	182, 235
TaaI	ACNGT	2 cut(s)	277, 727
TaqI	TCGA	6 cut(s)	33, 48, 70, 217, 261, 479
TaqII	GACCGA	2 cut(s)	88, 686
TasI	AATT	2 cut(s)	432, 505
TauI	GCSGC	1 cut(s)	166
TfiI	GAWTC	3 cut(s)	64, 158, 219
Tru1I	TTAA	3 cut(s)	23, 317, 802
Tru9I	TTAA	3 cut(s)	23, 317, 802
TseFI	GTSAC	4 cut(s)	26, 533, 667, 730
TseI	GCWGC	3 cut(s)	248, 611, 737
Tsp45I	GTSAC	4 cut(s)	26, 533, 667, 730
TspDTI	ATGAA	3 cut(s)	404, 576, 763
TspGWI	ACGGA	2 cut(s)	455, 699
VpaK11BI	GGWCC	1 cut(s)	796
XmnI	GAANNNNTTC	1 cut(s)	790
XspI	CTAG	1 cut(s)	677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.