Rh6CG026700

5'-methylthioadenosine S-adenosylhomocysteine nucleosidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0010266
Physical Location & Seq
Reverse (-)
2353887 .. 2357983
4097 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG026700.1

Sequence Viewer

Length: 972 bp
ATGGTTAACCAATCAACGGTGGGTGATCCATTCCATTCATCTCTCCCACTCGTTCTTCTCTTCTTCTTCATCTTCTTCTTTTCCGAGTCTCTCAGCCGTAAACGGAAGTCACACTCCCCCCCCGCCTCAACCGCGGTCGTAAATCCTCCGATTCAGGCCAAAACACACTCGGCTATGGCTCCTCACGGCGACAAATCGGACGCTGCAGAGGACGCCATGGTTTCCGGAGCTGAGAAGCGCCCCATTTCCTCCGTCCTCATCGTCATCGCTATGCAGACTGAGGCGCTTCCGGTGGTGAATAAGTTTAACCTCACTGAGGTCCCTGACTCCGGGTTTCCGAAAGGAGTTCCTTGGGTTCGGTATCATGGTTTCTACAAGGATCTTGAGATTAATCTAGTGTGGCCTGGAAAAGATGAATCTTTGGGGGTTGATTGCGTAGGCACAGTTCCTGCATCTCTTGTGACCTATGCTTCCATTCAAGCATTACAGCCAGACCTAATTATCAATGCAGGCACTGCTGGTGGCTTTAAGGACAAAGGAGCATGCATTGGTGACATTTATCTTGCATCTGATGTTGCTTACCATGATAGAAGGATACCTATTCCTGTTTTTGATTTATATGGAGTTGGCTTGCGACTGGCCTACGCAACACCCAGTCTTCAAAAGGAACTTGACCTAAAGGTTGGCAAGCTGTCTACTGGCAACTCTTTGGATATGTCTCCACAGGATGAAGCATCAATAATTGCAAATGATGCTACCGTTAAAGACATGGAGGGTGCAGCTGTTGCCTATGTGGCAGATCTGTTGAAAGTCCCAGCAATATTTGTTAAAGCTGTGACTGATATAGTCGATGGTGAAAAACCAACTACAGAAGAATTCATGCAAAATTTGGTTGCAGTAACTGCTGCACTTGAACAGGCGGTCACCAAAGTTATTGATTTTATTAACGGAAAGTGCCTCTCCGAACTTTGA

Protein Analysis

323

Amino Acids

34.64

Weight (kDa)

5.01

Isoelectric Point (pI)

36.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 85 - 312 2.9e-28 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34840 AT4G34840 AT4G34840 AT4G34840 AT4G34840 AT4G38800
fragaria_vesca FvH4_2g02150
malus_domestica MD10G1116600.v1.1
prunus_persica Prupe.8G159400_v2.0.a1 Prupe.8G159500_v2.0.a1
pyrus_communis pycom10g10140
rosa_chinensis RchiOBHm_Chr6g0245651
rosa_laevigata RLG00000015296
rosa_multiflora Rmu_sc0016035.1_g000004
rosa_roxburghii Rroxscaffold_7G00215150
rosa_rugosa Rorug05G0515300
rosa_samantha Rh6AG030000 Rh6BG027400 Rh6CG026700 Rh6DG026100
rosa_wichuraiana Rw6G002570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 695
AccII CGCG 1 cut(s) 134
AccIII TCCGGA 1 cut(s) 224
AciI CCGC 4 cut(s) 123, 132, 134, 920
AclWI GGATC 2 cut(s) 20, 387
AcsI RAATTY 2 cut(s) 875, 886
AcyI GRCGYC 1 cut(s) 213
AfiI CCNNNNNNNGG 3 cut(s) 16, 316, 329
AgsI TTSAA 4 cut(s) 479, 662, 808, 914
AjnI CCWGG 1 cut(s) 403
AluBI AGCT 4 cut(s) 230, 691, 782, 833
AluI AGCT 4 cut(s) 230, 691, 782, 833
Alw26I GTCTC 2 cut(s) 93, 723
AlwI GGATC 2 cut(s) 20, 387
AlwNI CAGNNNCTG 3 cut(s) 449, 515, 902
Aor13HI TCCGGA 1 cut(s) 224
AoxI GGCC 3 cut(s) 156, 401, 639
ApeKI GCWGC 3 cut(s) 203, 779, 905
ApoI RAATTY 2 cut(s) 875, 886
AseI ATTAAT 1 cut(s) 390
AspLEI GCGC 2 cut(s) 240, 286
AspS9I GGNCC 1 cut(s) 319
AsuC2I CCSGG 1 cut(s) 331
AsuHPI GGTGA 5 cut(s) 35, 307, 563, 866, 916
AvaII GGWCC 1 cut(s) 319
BbsI GAAGAC 1 cut(s) 650
BbvI GCAGC 3 cut(s) 190, 791, 892
BccI CCATC 1 cut(s) 845
BceAI ACGGC 2 cut(s) 81, 202
BciT130I CCWGG 1 cut(s) 405
BciVI GTATCC 1 cut(s) 588
BcnI CCSGG 1 cut(s) 331
BcoDI GTCTC 2 cut(s) 93, 723
BfaI CTAG 1 cut(s) 395
BfmI CTRYAG 2 cut(s) 204, 867
BfoI RGCGCY 2 cut(s) 241, 287
BfuI GTATCC 1 cut(s) 588
BglI GCCNNNNNGGC 1 cut(s) 794
BglII AGATCT 1 cut(s) 799
BisI GCNGC 3 cut(s) 204, 780, 906
BlsI GCNGC 3 cut(s) 205, 781, 907
Bme1390I CCNGG 2 cut(s) 331, 405
Bme18I GGWCC 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 319
BmiI GGNNCC 2 cut(s) 180, 321
BmrFI CCNGG 2 cut(s) 331, 405
BmrI ACTGGG 1 cut(s) 648
BmsI GCATC 4 cut(s) 461, 575, 742, 743
BmuI ACTGGG 1 cut(s) 648
BpiI GAAGAC 1 cut(s) 650
BpuEI CTTGAG 1 cut(s) 404
BpuMI CCSGG 1 cut(s) 331
BsaHI GRCGYC 1 cut(s) 213
BsaJI CCNNGG 3 cut(s) 132, 216, 350
BsaWI WCCGGW 2 cut(s) 224, 289
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 316, 329
Bse1I ACTGG 3 cut(s) 642, 654, 703
BseAI TCCGGA 1 cut(s) 224
BseBI CCWGG 1 cut(s) 405
BseDI CCNNGG 3 cut(s) 132, 216, 350
BseGI GGATG 1 cut(s) 733
BseLI CCNNNNNNNGG 3 cut(s) 16, 316, 329
BseMII CTCAG 4 cut(s) 106, 222, 270, 306
BseNI ACTGG 3 cut(s) 642, 654, 703
BseRI GAGGAG 1 cut(s) 171
BseXI GCAGC 3 cut(s) 190, 791, 892
BseYI CCCAGC 1 cut(s) 814
BsgI GTGCAG 2 cut(s) 798, 891
Bsh1236I CGCG 1 cut(s) 134
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 3 cut(s) 158, 403, 641
BsiEI CGRYCG 1 cut(s) 138
BsiSI CCGG 3 cut(s) 225, 290, 330
BslFI GGGAC 2 cut(s) 305, 797
BslI CCNNNNNNNGG 3 cut(s) 16, 316, 329
BsmAI GTCTC 2 cut(s) 93, 723
BsmFI GGGAC 2 cut(s) 305, 797
BsnI GGCC 3 cut(s) 158, 403, 641
Bsp13I TCCGGA 1 cut(s) 224
Bsp143I GATC 3 cut(s) 25, 379, 799
Bsp19I CCATGG 1 cut(s) 216
BspACI CCGC 4 cut(s) 123, 132, 134, 920
BspANI GGCC 3 cut(s) 158, 403, 641
BspCNI CTCAG 4 cut(s) 105, 223, 271, 307
BspEI TCCGGA 1 cut(s) 224
BspFNI CGCG 1 cut(s) 134
BspLI GGNNCC 2 cut(s) 180, 321
BspMAI CTGCAG 1 cut(s) 208
BspPI GGATC 2 cut(s) 20, 387
BsrI ACTGG 3 cut(s) 642, 654, 703
BssECI CCNNGG 3 cut(s) 132, 216, 350
BssMI GATC 3 cut(s) 25, 379, 799
BssNI GRCGYC 1 cut(s) 213
BssT1I CCWWGG 2 cut(s) 216, 350
Bst2UI CCWGG 1 cut(s) 405
Bst4CI ACNGT 3 cut(s) 19, 445, 760
Bst6I CTCTTC 1 cut(s) 65
BstACI GRCGYC 1 cut(s) 213
BstAPI GCANNNNNTGC 4 cut(s) 515, 752, 785, 902
BstC8I GCNNGC 4 cut(s) 511, 544, 632, 689
BstDEI CTNAG 4 cut(s) 92, 231, 279, 315
BstDSI CCRYGG 2 cut(s) 132, 216
BstEII GGTNACC 1 cut(s) 922
BstENI CCTNNNNNAGG 1 cut(s) 314
BstF5I GGATG 1 cut(s) 733
BstFNI CGCG 1 cut(s) 134
BstH2I RGCGCY 2 cut(s) 241, 287
BstHHI GCGC 2 cut(s) 240, 286
BstKTI GATC 3 cut(s) 28, 382, 802
BstMAI GTCTC 2 cut(s) 93, 723
BstMBI GATC 3 cut(s) 25, 379, 799
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 7 cut(s) 131, 212, 515, 752, 785, 794, 902
BstNI CCWGG 1 cut(s) 405
BstNSI RCATGY 1 cut(s) 546
BstPI GGTNACC 1 cut(s) 922
BstSCI CCNGG 2 cut(s) 329, 403
BstSFI CTRYAG 2 cut(s) 204, 867
BstUI CGCG 1 cut(s) 134
BstV1I GCAGC 3 cut(s) 190, 791, 892
BstV2I GAAGAC 1 cut(s) 650
BstX2I RGATCY 2 cut(s) 379, 799
BstYI RGATCY 2 cut(s) 379, 799
BsuI GTATCC 1 cut(s) 588
BsuRI GGCC 3 cut(s) 158, 403, 641
BtgI CCRYGG 2 cut(s) 132, 216
BtgZI GCGATG 1 cut(s) 250
BtsCI GGATG 1 cut(s) 733
BtsI GCAGTG 1 cut(s) 513
BtsIMutI CAGTG 2 cut(s) 312, 513
Cac8I GCNNGC 4 cut(s) 511, 544, 632, 689
CaiI CAGNNNCTG 3 cut(s) 449, 515, 902
CfoI GCGC 2 cut(s) 240, 286
Cfr13I GGNCC 1 cut(s) 319
Cfr42I CCGCGG 1 cut(s) 135
CseI GACGC 2 cut(s) 209, 221
CviAII CATG 6 cut(s) 217, 365, 543, 584, 769, 880
DdeI CTNAG 4 cut(s) 92, 231, 279, 315
DpnI GATC 3 cut(s) 27, 381, 801
DpnII GATC 3 cut(s) 25, 379, 799
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Eco130I CCWWGG 2 cut(s) 216, 350
Eco47I GGWCC 1 cut(s) 319
Eco91I GGTNACC 1 cut(s) 922
EcoNI CCTNNNNNAGG 1 cut(s) 314
EcoO109I RGGNCCY 1 cut(s) 319
EcoO65I GGTNACC 1 cut(s) 922
EcoRI GAATTC 1 cut(s) 875
EcoRII CCWGG 1 cut(s) 403
EcoT14I CCWWGG 2 cut(s) 216, 350
EcoT22I ATGCAT 1 cut(s) 548
ErhI CCWWGG 2 cut(s) 216, 350
FaeI CATG 6 cut(s) 220, 368, 546, 587, 772, 883
FaqI GGGAC 2 cut(s) 305, 797
FatI CATG 6 cut(s) 216, 364, 542, 583, 768, 879
FauI CCCGC 1 cut(s) 130
FblI GTMKAC 1 cut(s) 695
Fnu4HI GCNGC 3 cut(s) 204, 780, 906
FokI GGATG 1 cut(s) 740
Fsp4HI GCNGC 3 cut(s) 204, 780, 906
FspBI CTAG 1 cut(s) 395
GlaI GCGC 2 cut(s) 239, 285
GluI GCNGC 3 cut(s) 204, 780, 906
GsaI CCCAGC 1 cut(s) 818
HaeII RGCGCY 2 cut(s) 241, 287
HaeIII GGCC 3 cut(s) 158, 403, 641
HapII CCGG 3 cut(s) 225, 290, 330
HgaI GACGC 2 cut(s) 209, 221
HhaI GCGC 2 cut(s) 240, 286
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 6 cut(s) 220, 368, 546, 587, 772, 883
Hin6I GCGC 2 cut(s) 238, 284
HinP1I GCGC 2 cut(s) 238, 284
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HinfI GANTC 4 cut(s) 86, 151, 326, 416
HpaI GTTAAC 1 cut(s) 7
HpaII CCGG 3 cut(s) 225, 290, 330
HphI GGTGA 5 cut(s) 35, 307, 563, 866, 916
Hpy166II GTNNAC 3 cut(s) 7, 101, 696
Hpy188I TCNGA 6 cut(s) 85, 150, 199, 339, 571, 964
Hpy188III TCNNGA 2 cut(s) 225, 383
Hpy8I GTNNAC 3 cut(s) 7, 101, 696
HpyAV CCTTC 1 cut(s) 585
HpyCH4III ACNGT 3 cut(s) 19, 445, 760
HpyF10VI GCNNNNNNNGC 7 cut(s) 131, 212, 515, 752, 785, 794, 902
HpyF3I CTNAG 4 cut(s) 92, 231, 279, 315
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 6 cut(s) 220, 368, 546, 587, 772, 883
HspAI GCGC 2 cut(s) 238, 284
Kpn2I TCCGGA 1 cut(s) 224
KspAI GTTAAC 1 cut(s) 7
KspI CCGCGG 1 cut(s) 135
Kzo9I GATC 3 cut(s) 25, 379, 799
LmnI GCTCC 3 cut(s) 184, 227, 539
Lsp1109I GCAGC 3 cut(s) 190, 791, 892
LweI GCATC 4 cut(s) 461, 575, 742, 743
MaeI CTAG 1 cut(s) 395
MaeIII GTNAC 6 cut(s) 108, 460, 551, 835, 898, 922
MalI GATC 3 cut(s) 27, 381, 801
MboI GATC 3 cut(s) 25, 379, 799
MboII GAAGA 8 cut(s) 47, 52, 55, 58, 64, 67, 650, 884
MflI RGATCY 2 cut(s) 379, 799
MluCI AATT 4 cut(s) 498, 741, 875, 886
MlyI GAGTC 2 cut(s) 95, 320
Mph1103I ATGCAT 1 cut(s) 548
MroI TCCGGA 1 cut(s) 224
MseI TTAA 7 cut(s) 6, 306, 390, 528, 762, 828, 945
MslI CAYNNNNRTG 1 cut(s) 269
MspA1I CMGCKG 2 cut(s) 134, 782
MspI CCGG 3 cut(s) 225, 290, 330
MspR9I CCNGG 2 cut(s) 331, 405
MvaI CCWGG 1 cut(s) 405
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 7 cut(s) 131, 212, 515, 752, 785, 794, 902
NciI CCSGG 1 cut(s) 331
NcoI CCATGG 1 cut(s) 216
NdeII GATC 3 cut(s) 25, 379, 799
NlaIII CATG 6 cut(s) 220, 368, 546, 587, 772, 883
NlaIV GGNNCC 2 cut(s) 180, 321
NmeAIII GCCGAG 1 cut(s) 149
NmuCI GTSAC 5 cut(s) 108, 460, 551, 835, 922
NsiI ATGCAT 1 cut(s) 548
NspI RCATGY 1 cut(s) 546
PaeI GCATGC 1 cut(s) 546
PfeI GAWTC 2 cut(s) 151, 416
PkrI GCNGC 3 cut(s) 205, 781, 907
PleI GAGTC 2 cut(s) 94, 320
PpsI GAGTC 2 cut(s) 94, 320
PpuMI RGGWCCY 1 cut(s) 319
PshBI ATTAAT 1 cut(s) 390
Psp5II RGGWCCY 1 cut(s) 319
Psp6I CCWGG 1 cut(s) 403
PspEI GGTNACC 1 cut(s) 922
PspFI CCCAGC 1 cut(s) 814
PspGI CCWGG 1 cut(s) 403
PspN4I GGNNCC 2 cut(s) 180, 321
PspPI GGNCC 1 cut(s) 319
PspPPI RGGWCCY 1 cut(s) 319
PsrI GAACNNNNNNTAC 2 cut(s) 429, 461
PstI CTGCAG 1 cut(s) 208
PstNI CAGNNNCTG 3 cut(s) 449, 515, 902
PsuI RGATCY 2 cut(s) 379, 799
PvuII CAGCTG 1 cut(s) 782
RseI CAYNNNNRTG 1 cut(s) 269
SacII CCGCGG 1 cut(s) 135
SaqAI TTAA 7 cut(s) 6, 306, 390, 528, 762, 828, 945
SatI GCNGC 3 cut(s) 204, 780, 906
Sau3AI GATC 3 cut(s) 25, 379, 799
Sau96I GGNCC 1 cut(s) 319
SchI GAGTC 2 cut(s) 95, 320
ScrFI CCNGG 2 cut(s) 331, 405
SfaNI GCATC 4 cut(s) 461, 575, 742, 743
SfcI CTRYAG 2 cut(s) 204, 867
Sfr303I CCGCGG 1 cut(s) 135
SgrBI CCGCGG 1 cut(s) 135
SinI GGWCC 1 cut(s) 319
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
SphI GCATGC 1 cut(s) 546
Sse9I AATT 4 cut(s) 498, 741, 875, 886
SsiI CCGC 4 cut(s) 123, 132, 134, 920
SspI AATATT 1 cut(s) 822
SspMI CTAG 1 cut(s) 395
StyD4I CCNGG 2 cut(s) 329, 403
StyI CCWWGG 2 cut(s) 216, 350
TaaI ACNGT 3 cut(s) 19, 445, 760
TaqI TCGA 1 cut(s) 849
TasI AATT 4 cut(s) 498, 741, 875, 886
TfiI GAWTC 2 cut(s) 151, 416
Tru1I TTAA 7 cut(s) 6, 306, 390, 528, 762, 828, 945
Tru9I TTAA 7 cut(s) 6, 306, 390, 528, 762, 828, 945
TscAI CASTG 2 cut(s) 319, 520
TseFI GTSAC 5 cut(s) 108, 460, 551, 835, 922
TseI GCWGC 3 cut(s) 203, 779, 905
Tsp45I GTSAC 5 cut(s) 108, 460, 551, 835, 922
TspDTI ATGAA 5 cut(s) 27, 58, 429, 744, 868
TspGWI ACGGA 3 cut(s) 118, 241, 963
TspRI CASTG 2 cut(s) 319, 520
VpaK11BI GGWCC 1 cut(s) 319
VspI ATTAAT 1 cut(s) 390
XagI CCTNNNNNAGG 1 cut(s) 314
XapI RAATTY 2 cut(s) 875, 886
XceI RCATGY 1 cut(s) 546
XmiI GTMKAC 1 cut(s) 695
XspI CTAG 1 cut(s) 395
Zsp2I ATGCAT 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.