Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010266

Physical Location & Seq

Genomic Coordinates Forward (+)

13437902 .. 13441785

Gene Structure 3884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g10140.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCTCCTCACGGCGACAAATCGGACGCTACCGAGGAAGCCTTGGTTTCCGAAGCTGAGAAGCGCCCCATTTCCACCATCCTCCTCGTCATCGCTATGCAGACTGAAGCGCTTCCAGTGGTGAACAAGTTCAATCTCTCAGAGGATCCTGACTCCGTGTTCCCAAACGGGGTGCCTTGGGTTCGGTATCACGGTTCTTACAAAGATCTTCAGATTAATCTAGTTTGGCCTGGAAAAGATTCTTCTTTGGGGGTTGATTGTGTAGGCACAGTTTCTGCATCTCTTGTGACCTATGCTTCCATTCAAGCATTACAACCTGACCTAATTATCAATGCAGGCACTGCTGGTGGTTTTAAGGCCAAAGGAGCTTGCATCGGTGATGTGTATCTCGCATGTGATGTTGCTTACCATGACAGAAGGATACCTATTCCTGTCTTTGATCTATATGGAGTTGGTTTACGGCAAGCCTGCGCGTCACCGAATCTTCAAAAGGAACTTAATCTGAAGGTTGGTAAACTGTCCACTGGAAACTCTCTAGATATGTCCCCACAGGACGAAGCATCGATCATTGCAAATGATGCTACAATTAAAGACATGGAGGGGGCAGCTGTTGCTTACGTTGCAGATCTGTTGAAAGTCCCAATCATATTTGTTAAAGCCGTGACTGACATAGTAGACGGTGAAAAACCAACTGCTGAAGAATTCTTGAAAAATTTGGCAGCTGTAACTGCTGCTCTTGAAGAGAAGGTCACCCAAGTCATTGACTTTATTAATGGAAAGTGCCTCTCTGATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008477 GO:0008652 GO:0008930 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009888 GO:0009987 GO:0010087 GO:0016053 GO:0016787 GO:0016798 GO:0016799 GO:0017144 GO:0019509 GO:0019752 GO:0032502 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0046394 GO:0048856 GO:0071265 GO:0071267 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

B3 PNP_UDP_1

Protein Analysis

266

Amino Acids

28.25

Weight (kDa)

4.62

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34840 AT4G34840 AT4G34840 AT4G34840 AT4G34840 AT4G38800
fragaria_vesca	FvH4_2g02150
malus_domestica	MD10G1116600.v1.1
prunus_persica	Prupe.8G159400_v2.0.a1 Prupe.8G159500_v2.0.a1
pyrus_communis	pycom10g10140
rosa_chinensis	RchiOBHm_Chr6g0245651
rosa_laevigata	RLG00000015296
rosa_multiflora	Rmu_sc0016035.1_g000004
rosa_roxburghii	Rroxscaffold_7G00215150
rosa_rugosa	Rorug05G0515300
rosa_samantha	Rh6AG030000 Rh6BG027400 Rh6CG026700 Rh6DG026100
rosa_wichuraiana	Rw6G002570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	172
AccI	GTMKAC	1 cut(s)	675
AccII	CGCG	1 cut(s)	473
AclWI	GGATC	2 cut(s)	140, 153
AcsI	RAATTY	2 cut(s)	701, 712
AcuI	CTGAAG	4 cut(s)	126, 194, 524, 717
AfeI	AGCGCT	1 cut(s)	111
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgsI	TTSAA	6 cut(s)	133, 305, 488, 634, 709, 740
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	4 cut(s)	56, 368, 608, 722
AluI	AGCT	4 cut(s)	56, 368, 608, 722
AlwI	GGATC	2 cut(s)	140, 153
AlwNI	CAGNNNCTG	2 cut(s)	275, 341
Aor51HI	AGCGCT	1 cut(s)	111
AoxI	GGCC	2 cut(s)	227, 357
ApeKI	GCWGC	3 cut(s)	605, 719, 731
ApoI	RAATTY	2 cut(s)	701, 712
AseI	ATTAAT	2 cut(s)	216, 771
Asp700I	GAANNNNTTC	3 cut(s)	111, 128, 238
AspLEI	GCGC	3 cut(s)	66, 112, 473
AsuHPI	GGTGA	5 cut(s)	133, 389, 468, 692, 742
BamHI	GGATCC	1 cut(s)	145
BanI	GGYRCC	1 cut(s)	172
BbvI	GCAGC	3 cut(s)	617, 718, 731
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	3 cut(s)	28, 476, 644
BciT130I	CCWGG	1 cut(s)	231
BciVI	GTATCC	1 cut(s)	414
BfaI	CTAG	2 cut(s)	221, 536
BfoI	RGCGCY	2 cut(s)	67, 113
BfuI	GTATCC	1 cut(s)	414
BglII	AGATCT	2 cut(s)	205, 625
BisI	GCNGC	3 cut(s)	606, 720, 732
BlsI	GCNGC	3 cut(s)	607, 721, 733
Bme1390I	CCNGG	1 cut(s)	231
BmiI	GGNNCC	3 cut(s)	6, 147, 174
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	4 cut(s)	287, 381, 568, 569
Bsa29I	ATCGAT	1 cut(s)	563
BsaBI	GATNNNNATC	1 cut(s)	384
BsaJI	CCNNGG	3 cut(s)	33, 42, 176
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse1I	ACTGG	2 cut(s)	116, 529
Bse3DI	GCAATG	1 cut(s)	567
Bse8I	GATNNNNATC	1 cut(s)	384
BseBI	CCWGG	1 cut(s)	231
BseCI	ATCGAT	1 cut(s)	563
BseDI	CCNNGG	3 cut(s)	33, 42, 176
BseGI	GGATG	1 cut(s)	78
BseJI	GATNNNNATC	1 cut(s)	384
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMI	GCAATG	1 cut(s)	567
BseMII	CTCAG	2 cut(s)	48, 153
BseNI	ACTGG	2 cut(s)	116, 529
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	3 cut(s)	617, 718, 731
Bsh1236I	CGCG	1 cut(s)	473
BshFI	GGCC	2 cut(s)	229, 359
BshNI	GGYRCC	1 cut(s)	172
BshVI	ATCGAT	1 cut(s)	563
BslFI	GGGAC	2 cut(s)	529, 623
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmFI	GGGAC	2 cut(s)	529, 623
BsnI	GGCC	2 cut(s)	229, 359
Bsp143I	GATC	6 cut(s)	145, 205, 439, 564, 625, 790
BspANI	GGCC	2 cut(s)	229, 359
BspCNI	CTCAG	2 cut(s)	49, 152
BspDI	ATCGAT	1 cut(s)	563
BspFNI	CGCG	1 cut(s)	473
BspLI	GGNNCC	3 cut(s)	6, 147, 174
BspPI	GGATC	2 cut(s)	140, 153
BspT107I	GGYRCC	1 cut(s)	172
BsrDI	GCAATG	1 cut(s)	567
BsrI	ACTGG	2 cut(s)	116, 529
BssECI	CCNNGG	3 cut(s)	33, 42, 176
BssMI	GATC	6 cut(s)	145, 205, 439, 564, 625, 790
BssT1I	CCWWGG	2 cut(s)	42, 176
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	4 cut(s)	194, 271, 519, 680
Bst6I	CTCTTC	1 cut(s)	735
BstAPI	GCANNNNNTGC	3 cut(s)	341, 578, 611
BstC8I	GCNNGC	4 cut(s)	337, 370, 465, 469
BstDEI	CTNAG	2 cut(s)	57, 139
BstEII	GGTNACC	1 cut(s)	748
BstF5I	GGATG	1 cut(s)	78
BstFNI	CGCG	1 cut(s)	473
BstH2I	RGCGCY	2 cut(s)	67, 113
BstHHI	GCGC	3 cut(s)	66, 112, 473
BstKTI	GATC	6 cut(s)	148, 208, 442, 567, 628, 793
BstMBI	GATC	6 cut(s)	145, 205, 439, 564, 625, 790
BstMWI	GCNNNNNNNGC	6 cut(s)	341, 365, 578, 611, 620, 728
BstNI	CCWGG	1 cut(s)	231
BstNSI	RCATGY	1 cut(s)	396
BstPI	GGTNACC	1 cut(s)	748
BstSCI	CCNGG	1 cut(s)	229
BstUI	CGCG	1 cut(s)	473
BstV1I	GCAGC	3 cut(s)	617, 718, 731
BstX2I	RGATCY	3 cut(s)	145, 205, 625
BstYI	RGATCY	3 cut(s)	145, 205, 625
Bsu15I	ATCGAT	1 cut(s)	563
BsuI	GTATCC	1 cut(s)	414
BsuRI	GGCC	2 cut(s)	229, 359
BsuTUI	ATCGAT	1 cut(s)	563
BtgZI	GCGATG	1 cut(s)	76
BtsCI	GGATG	1 cut(s)	78
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	3 cut(s)	123, 339, 522
Cac8I	GCNNGC	4 cut(s)	337, 370, 465, 469
CaiI	CAGNNNCTG	2 cut(s)	275, 341
CfoI	GCGC	3 cut(s)	66, 112, 473
ClaI	ATCGAT	1 cut(s)	563
CseI	GACGC	2 cut(s)	35, 462
CviAII	CATG	3 cut(s)	393, 410, 595
DdeI	CTNAG	2 cut(s)	57, 139
DpnI	GATC	6 cut(s)	147, 207, 441, 566, 627, 792
DpnII	GATC	6 cut(s)	145, 205, 439, 564, 625, 790
Eam1104I	CTCTTC	1 cut(s)	735
EarI	CTCTTC	1 cut(s)	735
Eco130I	CCWWGG	2 cut(s)	42, 176
Eco47III	AGCGCT	1 cut(s)	111
Eco57I	CTGAAG	4 cut(s)	126, 194, 524, 717
Eco91I	GGTNACC	1 cut(s)	748
EcoO65I	GGTNACC	1 cut(s)	748
EcoRI	GAATTC	1 cut(s)	701
EcoRII	CCWGG	1 cut(s)	229
EcoT14I	CCWWGG	2 cut(s)	42, 176
ErhI	CCWWGG	2 cut(s)	42, 176
FaeI	CATG	3 cut(s)	396, 413, 598
FaqI	GGGAC	2 cut(s)	529, 623
FatI	CATG	3 cut(s)	392, 409, 594
FblI	GTMKAC	1 cut(s)	675
Fnu4HI	GCNGC	3 cut(s)	606, 720, 732
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	3 cut(s)	606, 720, 732
FspBI	CTAG	2 cut(s)	221, 536
GlaI	GCGC	3 cut(s)	65, 111, 472
GluI	GCNGC	3 cut(s)	606, 720, 732
HaeII	RGCGCY	2 cut(s)	67, 113
HaeIII	GGCC	2 cut(s)	229, 359
HgaI	GACGC	2 cut(s)	35, 462
HhaI	GCGC	3 cut(s)	66, 112, 473
Hin1II	CATG	3 cut(s)	396, 413, 598
Hin6I	GCGC	3 cut(s)	64, 110, 471
HinP1I	GCGC	3 cut(s)	64, 110, 471
HinfI	GANTC	3 cut(s)	152, 239, 481
HphI	GGTGA	5 cut(s)	133, 389, 468, 692, 742
Hpy166II	GTNNAC	5 cut(s)	124, 458, 515, 522, 676
Hpy188I	TCNGA	6 cut(s)	25, 52, 142, 213, 504, 790
Hpy188III	TCNNGA	4 cut(s)	149, 536, 706, 737
Hpy8I	GTNNAC	5 cut(s)	124, 458, 515, 522, 676
HpyAV	CCTTC	3 cut(s)	411, 499, 739
HpyCH4III	ACNGT	4 cut(s)	194, 271, 519, 680
HpyCH4IV	ACGT	1 cut(s)	618
HpyCH4V	TGCA	6 cut(s)	100, 278, 335, 372, 572, 623
HpyF10VI	GCNNNNNNNGC	6 cut(s)	341, 365, 578, 611, 620, 728
HpyF3I	CTNAG	2 cut(s)	57, 139
HpySE526I	ACGT	1 cut(s)	618
Hsp92II	CATG	3 cut(s)	396, 413, 598
HspAI	GCGC	3 cut(s)	64, 110, 471
Kzo9I	GATC	6 cut(s)	145, 205, 439, 564, 625, 790
LmnI	GCTCC	2 cut(s)	10, 365
Lsp1109I	GCAGC	3 cut(s)	617, 718, 731
LweI	GCATC	4 cut(s)	287, 381, 568, 569
MaeI	CTAG	2 cut(s)	221, 536
MaeII	ACGT	1 cut(s)	618
MaeIII	GTNAC	5 cut(s)	286, 474, 661, 724, 748
MalI	GATC	6 cut(s)	147, 207, 441, 566, 627, 792
MboI	GATC	6 cut(s)	145, 205, 439, 564, 625, 790
MboII	GAAGA	5 cut(s)	200, 234, 476, 710, 752
MflI	RGATCY	3 cut(s)	145, 205, 625
MluCI	AATT	4 cut(s)	324, 585, 701, 712
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	7 cut(s)	18, 28, 92, 95, 136, 592, 794
MroXI	GAANNNNTTC	3 cut(s)	111, 128, 238
MseI	TTAA	6 cut(s)	216, 354, 498, 588, 654, 771
MslI	CAYNNNNRTG	1 cut(s)	95
MspA1I	CMGCKG	2 cut(s)	608, 722
MspR9I	CCNGG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	231
MvnI	CGCG	1 cut(s)	473
MwoI	GCNNNNNNNGC	6 cut(s)	341, 365, 578, 611, 620, 728
NdeII	GATC	6 cut(s)	145, 205, 439, 564, 625, 790
NlaIII	CATG	3 cut(s)	396, 413, 598
NlaIV	GGNNCC	3 cut(s)	6, 147, 174
NmuCI	GTSAC	4 cut(s)	286, 474, 661, 748
NspI	RCATGY	1 cut(s)	396
PdmI	GAANNNNTTC	3 cut(s)	111, 128, 238
PfeI	GAWTC	2 cut(s)	239, 481
PkrI	GCNGC	3 cut(s)	607, 721, 733
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
PshBI	ATTAAT	2 cut(s)	216, 771
Psp6I	CCWGG	1 cut(s)	229
PspEI	GGTNACC	1 cut(s)	748
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	3 cut(s)	6, 147, 174
PstNI	CAGNNNCTG	2 cut(s)	275, 341
PsuI	RGATCY	3 cut(s)	145, 205, 625
PvuII	CAGCTG	2 cut(s)	608, 722
RseI	CAYNNNNRTG	1 cut(s)	95
SaqAI	TTAA	6 cut(s)	216, 354, 498, 588, 654, 771
SatI	GCNGC	3 cut(s)	606, 720, 732
Sau3AI	GATC	6 cut(s)	145, 205, 439, 564, 625, 790
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	231
SfaNI	GCATC	4 cut(s)	287, 381, 568, 569
SmiMI	CAYNNNNRTG	1 cut(s)	95
Sse9I	AATT	4 cut(s)	324, 585, 701, 712
SspMI	CTAG	2 cut(s)	221, 536
StyD4I	CCNGG	1 cut(s)	229
StyI	CCWWGG	2 cut(s)	42, 176
TaaI	ACNGT	4 cut(s)	194, 271, 519, 680
TaiI	ACGT	1 cut(s)	621
TaqI	TCGA	1 cut(s)	563
TasI	AATT	4 cut(s)	324, 585, 701, 712
TfiI	GAWTC	2 cut(s)	239, 481
Tru1I	TTAA	6 cut(s)	216, 354, 498, 588, 654, 771
Tru9I	TTAA	6 cut(s)	216, 354, 498, 588, 654, 771
TscAI	CASTG	3 cut(s)	123, 346, 529
TseFI	GTSAC	4 cut(s)	286, 474, 661, 748
TseI	GCWGC	3 cut(s)	605, 719, 731
Tsp45I	GTSAC	4 cut(s)	286, 474, 661, 748
TspGWI	ACGGA	1 cut(s)	145
TspRI	CASTG	3 cut(s)	123, 346, 529
VspI	ATTAAT	2 cut(s)	216, 771
XapI	RAATTY	2 cut(s)	701, 712
XbaI	TCTAGA	1 cut(s)	535
XceI	RCATGY	1 cut(s)	396
XmiI	GTMKAC	1 cut(s)	675
XmnI	GAANNNNTTC	3 cut(s)	111, 128, 238
XspI	CTAG	2 cut(s)	221, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.