RchiOBHm_Chr6g0245651

5'-methylthioadenosine S-adenosylhomocysteine nucleosidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0010266
Physical Location & Seq
Reverse (-)
1409423 .. 1413144
3722 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22016

Sequence Viewer

Length: 798 bp
ATGGCTCCTCACGGCGACAAATCGGACGCTGCGGAGGACGCCATGGTTTCCGGAGCTGAGAAGCGCTCCATTTCCTCCGTCCTCATCGTCATCGCTATGCAGACTGAGGCGCTTCCGGTGGTGAATAAGTTTAACCTCACTGAGGTCCCTGACTCCGGGTTTCCGAAAGGAGTTCCTTGGGTTCGGTATCATGGTTTTTACAAGGATCTTGAGATTAATCTAGTGTGGCCTGGAAAAGATGAATCTTTGGGGGTTGATTGTGTAGGCACAGTTCCTGCATCTCTTGTGACCTATGCTTCCATTCAAGCACTACAGCCAGACCTAATTATCAATGCAGGCACTGCTGGTGGCTTTAAGGACAAAGGAGCATGCATTGGTGACATTTATCTCGCATCTGATGTTGCTTACCATGATAGAAGGATACCTATTCCTGTTTTTGATTTATACGGAGTTGGCTTGCGACTCACCTACACAACACCCAGTCTTCAAAAGGAACTTGAGCTAAAGGTTGGCAAGCTGTCTACTGGCAACTCTTTGGATATGTCTCCACAGGATGAAGCATCAATAGTTGCAAATGATGCTACCGTTAAAGACATGGAGGGTGCAGCCGTTGCCTATGTGGCAGATCTGTTGAAAGTCCCAGCAATATTTGTTAAAGCTGTGACTGATATAGTCGATGGTGAAAAACCAACTACAGAAGAATTCATGCAAAATTTGGTTGCAGTAACTGCTGCACTTGAACAGGCGGTCACCAAAGTTATTGATTTTATTAACGGAAAGTGCCTCCCCGAACTTTGA

Protein Analysis

265

Amino Acids

28.32

Weight (kDa)

4.59

Isoelectric Point (pI)

31.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNP_UDP_1 PF01048 27 - 254 5.5e-28 Phosphorylase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G34840 AT4G34840 AT4G34840 AT4G34840 AT4G34840 AT4G38800
fragaria_vesca FvH4_2g02150
malus_domestica MD10G1116600.v1.1
prunus_persica Prupe.8G159400_v2.0.a1 Prupe.8G159500_v2.0.a1
pyrus_communis pycom10g10140
rosa_chinensis RchiOBHm_Chr6g0245651
rosa_laevigata RLG00000015296
rosa_multiflora Rmu_sc0016035.1_g000004
rosa_roxburghii Rroxscaffold_7G00215150
rosa_rugosa Rorug05G0515300
rosa_samantha Rh6AG030000 Rh6BG027400 Rh6CG026700 Rh6DG026100
rosa_wichuraiana Rw6G002570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 521
AccIII TCCGGA 1 cut(s) 50
AciI CCGC 2 cut(s) 32, 746
AclWI GGATC 1 cut(s) 213
AcsI RAATTY 2 cut(s) 701, 712
AcyI GRCGYC 1 cut(s) 39
AfeI AGCGCT 1 cut(s) 65
AfiI CCNNNNNNNGG 2 cut(s) 142, 155
AgsI TTSAA 4 cut(s) 305, 488, 634, 740
AjnI CCWGG 1 cut(s) 229
AluBI AGCT 4 cut(s) 56, 502, 517, 659
AluI AGCT 4 cut(s) 56, 502, 517, 659
Alw26I GTCTC 1 cut(s) 549
AlwI GGATC 1 cut(s) 213
AlwNI CAGNNNCTG 3 cut(s) 275, 341, 728
Aor13HI TCCGGA 1 cut(s) 50
Aor51HI AGCGCT 1 cut(s) 65
AoxI GGCC 1 cut(s) 227
ApeKI GCWGC 3 cut(s) 29, 605, 731
ApoI RAATTY 2 cut(s) 701, 712
AseI ATTAAT 1 cut(s) 216
AspLEI GCGC 2 cut(s) 66, 112
AspS9I GGNCC 1 cut(s) 145
AsuC2I CCSGG 1 cut(s) 157
AsuHPI GGTGA 5 cut(s) 133, 389, 457, 692, 742
AvaII GGWCC 1 cut(s) 145
BbsI GAAGAC 1 cut(s) 476
BbvI GCAGC 3 cut(s) 16, 617, 718
BccI CCATC 1 cut(s) 671
BceAI ACGGC 2 cut(s) 28, 593
BciT130I CCWGG 1 cut(s) 231
BciVI GTATCC 1 cut(s) 414
BcnI CCSGG 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 549
BfaI CTAG 1 cut(s) 221
BfmI CTRYAG 2 cut(s) 311, 693
BfoI RGCGCY 2 cut(s) 67, 113
BfuI GTATCC 1 cut(s) 414
BglI GCCNNNNNGGC 1 cut(s) 620
BglII AGATCT 1 cut(s) 625
BisI GCNGC 3 cut(s) 30, 606, 732
BlsI GCNGC 3 cut(s) 31, 607, 733
Bme1390I CCNGG 2 cut(s) 157, 231
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 2 cut(s) 6, 147
BmrFI CCNGG 2 cut(s) 157, 231
BmrI ACTGGG 1 cut(s) 474
BmsI GCATC 4 cut(s) 287, 401, 568, 569
BmuI ACTGGG 1 cut(s) 474
BpiI GAAGAC 1 cut(s) 476
BplI GAGNNNNNCTC 2 cut(s) 50, 82
BpuEI CTTGAG 2 cut(s) 230, 518
BpuMI CCSGG 1 cut(s) 157
BsaHI GRCGYC 1 cut(s) 39
BsaJI CCNNGG 2 cut(s) 42, 176
BsaWI WCCGGW 2 cut(s) 50, 115
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 155
Bse1I ACTGG 2 cut(s) 480, 529
BseAI TCCGGA 1 cut(s) 50
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 2 cut(s) 42, 176
BseGI GGATG 1 cut(s) 559
BseLI CCNNNNNNNGG 2 cut(s) 142, 155
BseMII CTCAG 3 cut(s) 48, 96, 132
BseNI ACTGG 2 cut(s) 480, 529
BseXI GCAGC 3 cut(s) 16, 617, 718
BseYI CCCAGC 1 cut(s) 640
BsgI GTGCAG 2 cut(s) 624, 717
BshFI GGCC 1 cut(s) 229
BsiSI CCGG 3 cut(s) 51, 116, 156
BslFI GGGAC 2 cut(s) 131, 623
BslI CCNNNNNNNGG 2 cut(s) 142, 155
BsmAI GTCTC 1 cut(s) 549
BsmFI GGGAC 2 cut(s) 131, 623
BsnI GGCC 1 cut(s) 229
Bsp13I TCCGGA 1 cut(s) 50
Bsp143I GATC 2 cut(s) 205, 625
Bsp19I CCATGG 1 cut(s) 42
BspACI CCGC 2 cut(s) 32, 746
BspANI GGCC 1 cut(s) 229
BspCNI CTCAG 3 cut(s) 49, 97, 133
BspEI TCCGGA 1 cut(s) 50
BspLI GGNNCC 2 cut(s) 6, 147
BspPI GGATC 1 cut(s) 213
BsrI ACTGG 2 cut(s) 480, 529
BssECI CCNNGG 2 cut(s) 42, 176
BssMI GATC 2 cut(s) 205, 625
BssNI GRCGYC 1 cut(s) 39
BssT1I CCWWGG 2 cut(s) 42, 176
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 2 cut(s) 271, 586
BstACI GRCGYC 1 cut(s) 39
BstAPI GCANNNNNTGC 4 cut(s) 341, 578, 611, 728
BstC8I GCNNGC 4 cut(s) 337, 370, 458, 515
BstDEI CTNAG 3 cut(s) 57, 105, 141
BstDSI CCRYGG 1 cut(s) 42
BstEII GGTNACC 1 cut(s) 748
BstENI CCTNNNNNAGG 1 cut(s) 140
BstF5I GGATG 1 cut(s) 559
BstH2I RGCGCY 2 cut(s) 67, 113
BstHHI GCGC 2 cut(s) 66, 112
BstKTI GATC 2 cut(s) 208, 628
BstMAI GTCTC 1 cut(s) 549
BstMBI GATC 2 cut(s) 205, 625
BstMWI GCNNNNNNNGC 6 cut(s) 38, 341, 578, 611, 620, 728
BstNI CCWGG 1 cut(s) 231
BstNSI RCATGY 1 cut(s) 372
BstPI GGTNACC 1 cut(s) 748
BstSCI CCNGG 2 cut(s) 155, 229
BstSFI CTRYAG 2 cut(s) 311, 693
BstV1I GCAGC 3 cut(s) 16, 617, 718
BstV2I GAAGAC 1 cut(s) 476
BstX2I RGATCY 2 cut(s) 205, 625
BstYI RGATCY 2 cut(s) 205, 625
BsuI GTATCC 1 cut(s) 414
BsuRI GGCC 1 cut(s) 229
BtgI CCRYGG 1 cut(s) 42
BtgZI GCGATG 1 cut(s) 76
BtsCI GGATG 1 cut(s) 559
BtsI GCAGTG 1 cut(s) 339
BtsIMutI CAGTG 2 cut(s) 138, 339
Cac8I GCNNGC 4 cut(s) 337, 370, 458, 515
CaiI CAGNNNCTG 3 cut(s) 275, 341, 728
CfoI GCGC 2 cut(s) 66, 112
Cfr13I GGNCC 1 cut(s) 145
CseI GACGC 2 cut(s) 35, 47
CviAII CATG 6 cut(s) 43, 191, 369, 410, 595, 706
DdeI CTNAG 3 cut(s) 57, 105, 141
DpnI GATC 2 cut(s) 207, 627
DpnII GATC 2 cut(s) 205, 625
Eco130I CCWWGG 2 cut(s) 42, 176
Eco47I GGWCC 1 cut(s) 145
Eco47III AGCGCT 1 cut(s) 65
Eco91I GGTNACC 1 cut(s) 748
EcoNI CCTNNNNNAGG 1 cut(s) 140
EcoO109I RGGNCCY 1 cut(s) 145
EcoO65I GGTNACC 1 cut(s) 748
EcoRI GAATTC 1 cut(s) 701
EcoRII CCWGG 1 cut(s) 229
EcoT14I CCWWGG 2 cut(s) 42, 176
EcoT22I ATGCAT 1 cut(s) 374
ErhI CCWWGG 2 cut(s) 42, 176
FaeI CATG 6 cut(s) 46, 194, 372, 413, 598, 709
FaqI GGGAC 2 cut(s) 131, 623
FatI CATG 6 cut(s) 42, 190, 368, 409, 594, 705
FblI GTMKAC 1 cut(s) 521
Fnu4HI GCNGC 3 cut(s) 30, 606, 732
FokI GGATG 1 cut(s) 566
Fsp4HI GCNGC 3 cut(s) 30, 606, 732
FspBI CTAG 1 cut(s) 221
GlaI GCGC 2 cut(s) 65, 111
GluI GCNGC 3 cut(s) 30, 606, 732
GsaI CCCAGC 1 cut(s) 644
HaeII RGCGCY 2 cut(s) 67, 113
HaeIII GGCC 1 cut(s) 229
HapII CCGG 3 cut(s) 51, 116, 156
HgaI GACGC 2 cut(s) 35, 47
HhaI GCGC 2 cut(s) 66, 112
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 6 cut(s) 46, 194, 372, 413, 598, 709
Hin6I GCGC 2 cut(s) 64, 110
HinP1I GCGC 2 cut(s) 64, 110
HinfI GANTC 3 cut(s) 152, 242, 462
HpaII CCGG 3 cut(s) 51, 116, 156
HphI GGTGA 5 cut(s) 133, 389, 457, 692, 742
Hpy166II GTNNAC 1 cut(s) 522
Hpy188I TCNGA 3 cut(s) 25, 165, 397
Hpy188III TCNNGA 2 cut(s) 51, 209
Hpy8I GTNNAC 1 cut(s) 522
HpyAV CCTTC 1 cut(s) 411
HpyCH4III ACNGT 2 cut(s) 271, 586
HpyCH4V TGCA 9 cut(s) 100, 278, 335, 372, 572, 605, 709, 722, 734
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 341, 578, 611, 620, 728
HpyF3I CTNAG 3 cut(s) 57, 105, 141
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 6 cut(s) 46, 194, 372, 413, 598, 709
HspAI GCGC 2 cut(s) 64, 110
Kpn2I TCCGGA 1 cut(s) 50
Kzo9I GATC 2 cut(s) 205, 625
LmnI GCTCC 4 cut(s) 10, 53, 71, 365
Lsp1109I GCAGC 3 cut(s) 16, 617, 718
LweI GCATC 4 cut(s) 287, 401, 568, 569
MaeI CTAG 1 cut(s) 221
MaeIII GTNAC 5 cut(s) 286, 377, 661, 724, 748
MalI GATC 2 cut(s) 207, 627
MboI GATC 2 cut(s) 205, 625
MboII GAAGA 2 cut(s) 476, 710
MflI RGATCY 2 cut(s) 205, 625
MluCI AATT 3 cut(s) 324, 701, 712
MlyI GAGTC 2 cut(s) 146, 456
MnlI CCTC 9 cut(s) 18, 28, 85, 92, 100, 136, 146, 592, 794
Mph1103I ATGCAT 1 cut(s) 374
MroI TCCGGA 1 cut(s) 50
MseI TTAA 6 cut(s) 132, 216, 354, 588, 654, 771
MslI CAYNNNNRTG 1 cut(s) 95
MspI CCGG 3 cut(s) 51, 116, 156
MspR9I CCNGG 2 cut(s) 157, 231
MvaI CCWGG 1 cut(s) 231
MwoI GCNNNNNNNGC 6 cut(s) 38, 341, 578, 611, 620, 728
NciI CCSGG 1 cut(s) 157
NcoI CCATGG 1 cut(s) 42
NdeII GATC 2 cut(s) 205, 625
NlaIII CATG 6 cut(s) 46, 194, 372, 413, 598, 709
NlaIV GGNNCC 2 cut(s) 6, 147
NmuCI GTSAC 4 cut(s) 286, 377, 661, 748
NsiI ATGCAT 1 cut(s) 374
NspI RCATGY 1 cut(s) 372
PaeI GCATGC 1 cut(s) 372
PfeI GAWTC 1 cut(s) 242
PkrI GCNGC 3 cut(s) 31, 607, 733
PleI GAGTC 2 cut(s) 146, 456
PpsI GAGTC 2 cut(s) 146, 456
PpuMI RGGWCCY 1 cut(s) 145
PshBI ATTAAT 1 cut(s) 216
Psp5II RGGWCCY 1 cut(s) 145
Psp6I CCWGG 1 cut(s) 229
PspEI GGTNACC 1 cut(s) 748
PspFI CCCAGC 1 cut(s) 640
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 2 cut(s) 6, 147
PspPI GGNCC 1 cut(s) 145
PspPPI RGGWCCY 1 cut(s) 145
PsrI GAACNNNNNNTAC 2 cut(s) 255, 287
PstNI CAGNNNCTG 3 cut(s) 275, 341, 728
PsuI RGATCY 2 cut(s) 205, 625
RseI CAYNNNNRTG 1 cut(s) 95
SaqAI TTAA 6 cut(s) 132, 216, 354, 588, 654, 771
SatI GCNGC 3 cut(s) 30, 606, 732
Sau3AI GATC 2 cut(s) 205, 625
Sau96I GGNCC 1 cut(s) 145
SchI GAGTC 2 cut(s) 146, 456
ScrFI CCNGG 2 cut(s) 157, 231
SfaNI GCATC 4 cut(s) 287, 401, 568, 569
SfcI CTRYAG 2 cut(s) 311, 693
SinI GGWCC 1 cut(s) 145
SmiMI CAYNNNNRTG 1 cut(s) 95
SmlI CTYRAG 2 cut(s) 209, 497
SmoI CTYRAG 2 cut(s) 209, 497
SphI GCATGC 1 cut(s) 372
Sse9I AATT 3 cut(s) 324, 701, 712
SsiI CCGC 2 cut(s) 32, 746
SspI AATATT 1 cut(s) 648
SspMI CTAG 1 cut(s) 221
StyD4I CCNGG 2 cut(s) 155, 229
StyI CCWWGG 2 cut(s) 42, 176
TaaI ACNGT 2 cut(s) 271, 586
TaqI TCGA 1 cut(s) 675
TasI AATT 3 cut(s) 324, 701, 712
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 6 cut(s) 132, 216, 354, 588, 654, 771
Tru9I TTAA 6 cut(s) 132, 216, 354, 588, 654, 771
TscAI CASTG 2 cut(s) 145, 346
TseFI GTSAC 4 cut(s) 286, 377, 661, 748
TseI GCWGC 3 cut(s) 29, 605, 731
Tsp45I GTSAC 4 cut(s) 286, 377, 661, 748
TspDTI ATGAA 3 cut(s) 255, 570, 694
TspGWI ACGGA 3 cut(s) 67, 462, 789
TspRI CASTG 2 cut(s) 145, 346
VpaK11BI GGWCC 1 cut(s) 145
VspI ATTAAT 1 cut(s) 216
XagI CCTNNNNNAGG 1 cut(s) 140
XapI RAATTY 2 cut(s) 701, 712
XceI RCATGY 1 cut(s) 372
XmiI GTMKAC 1 cut(s) 521
XspI CTAG 1 cut(s) 221
Zsp2I ATGCAT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.