Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010266

Physical Location & Seq

Genomic Coordinates Reverse (-)

1799714 .. 1803519

Gene Structure 3806 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g02150.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCTCCTCACGGCGACAAATCCGACGCTGCGGAGGACGCCATGGTTGCCGGAGCCGAGAAGCGCCCTGTCTCCTCCGTCCTCATCGTCATCGCTATGCAGACTGAGGCGTTTCCGGTGGTGCAGAAGTTTAATCTCACTGAGGTACCTGACTCCGGGTTTCCGAAAGGAGTTCCGTGGGTTCGGTATCATGGATTTTACAAGGATCTTGAAATTAATCTAGTGTGGCCTGGAAAAGATCAGTGTTTGGGGGTTGATTCAGTAGGCACGGTTCCTGCATCTCTTGTGACCTATGCTGCCATTCAAGCATTACAGCCAGACCTAATTATCAATGCTGGCACTGCGGGTGGCTTTAAGGAGAAAGGAGCATGCATTGGTGACGTGTATCTCGCATCTGATGTTGCTTACCATGATAGAAGGATACCTATTCCTGTATTTGATCTATATGGAGTTGGCTTGAAACCGGCCTGCTCAACACCAAGTCTTCAAAAGGAACTTGACTTAAAGGTTGGCAAGCTGTCTACTGGCAACTCTTTGGACATGTCTCCACAGGATGAAGCATCAATCATTGCAAATGATGCTACAATTAAAGACATGGAGGGTGCAGCTGTTGCATATGTGGCAGAAATGTTGAAAGTCCCAGCAATATTTGTTAAGGCTGTGACTGATATAGTCGATGGTGAAAAACCTACTGCAGAAGAATTCATGCAAAATTTGGTTGCAGTAACTGCTGCACTTGAACAGAAGGTCACCAAAGTTATTGATTTTATTAACGGAAAGTGCCTCTCCGATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006555 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008477 GO:0008652 GO:0008930 GO:0009058 GO:0009066 GO:0009067 GO:0009086 GO:0009888 GO:0009987 GO:0010087 GO:0016053 GO:0016787 GO:0016798 GO:0016799 GO:0017144 GO:0019509 GO:0019752 GO:0032502 GO:0043094 GO:0043102 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0046394 GO:0048856 GO:0071265 GO:0071267 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

B3 PNP_UDP_1

Protein Analysis

266

Amino Acids

28.23

Weight (kDa)

4.69

Isoelectric Point (pI)

31.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PNP_UDP_1	PF01048	27 - 254	3.4e-28	Phosphorylase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G34840 AT4G34840 AT4G34840 AT4G34840 AT4G34840 AT4G38800
fragaria_vesca	FvH4_2g02150
malus_domestica	MD10G1116600.v1.1
prunus_persica	Prupe.8G159400_v2.0.a1 Prupe.8G159500_v2.0.a1
pyrus_communis	pycom10g10140
rosa_chinensis	RchiOBHm_Chr6g0245651
rosa_laevigata	RLG00000015296
rosa_multiflora	Rmu_sc0016035.1_g000004
rosa_roxburghii	Rroxscaffold_7G00215150
rosa_rugosa	Rorug05G0515300
rosa_samantha	Rh6AG030000 Rh6BG027400 Rh6CG026700 Rh6DG026100
rosa_wichuraiana	Rw6G002570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	145
AccB1I	GGYRCC	1 cut(s)	145
AccI	GTMKAC	1 cut(s)	521
AciI	CCGC	2 cut(s)	32, 344
AclWI	GGATC	1 cut(s)	213
AcsI	RAATTY	2 cut(s)	701, 712
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	1 cut(s)	147
AfiI	CCNNNNNNNGG	1 cut(s)	155
AflIII	ACRYGT	2 cut(s)	381, 540
AgsI	TTSAA	6 cut(s)	212, 305, 460, 488, 634, 740
AjiI	CACGTC	1 cut(s)	382
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	2 cut(s)	517, 608
AluI	AGCT	2 cut(s)	517, 608
Alw26I	GTCTC	2 cut(s)	76, 549
AlwI	GGATC	1 cut(s)	213
AlwNI	CAGNNNCTG	1 cut(s)	728
AoxI	GGCC	2 cut(s)	227, 465
ApeKI	GCWGC	4 cut(s)	29, 296, 605, 731
ApoI	RAATTY	2 cut(s)	701, 712
AseI	ATTAAT	1 cut(s)	216
Asp718I	GGTACC	1 cut(s)	145
AspLEI	GCGC	1 cut(s)	66
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	3 cut(s)	389, 692, 742
BaeI	ACNNNNGTAYC	2 cut(s)	129, 162
BanI	GGYRCC	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	476
BbvI	GCAGC	4 cut(s)	16, 283, 617, 718
BccI	CCATC	1 cut(s)	671
BceAI	ACGGC	1 cut(s)	28
BciT130I	CCWGG	1 cut(s)	231
BciVI	GTATCC	1 cut(s)	414
BcnI	CCSGG	1 cut(s)	157
BcoDI	GTCTC	2 cut(s)	76, 549
BfaI	CTAG	1 cut(s)	221
BfmI	CTRYAG	1 cut(s)	693
BfoI	RGCGCY	1 cut(s)	67
BfuI	GTATCC	1 cut(s)	414
BisI	GCNGC	4 cut(s)	30, 297, 606, 732
BlsI	GCNGC	4 cut(s)	31, 298, 607, 733
Bme1390I	CCNGG	2 cut(s)	157, 231
BmgBI	CACGTC	1 cut(s)	382
BmiI	GGNNCC	4 cut(s)	6, 55, 147, 273
BmrFI	CCNGG	2 cut(s)	157, 231
BmsI	GCATC	4 cut(s)	287, 401, 568, 569
BpiI	GAAGAC	1 cut(s)	476
BpuMI	CCSGG	1 cut(s)	157
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	42, 176
BsaWI	WCCGGW	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse118I	RCCGGY	1 cut(s)	463
Bse1I	ACTGG	1 cut(s)	529
Bse3DI	GCAATG	1 cut(s)	567
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	42, 176
BseGI	GGATG	1 cut(s)	559
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMI	GCAATG	1 cut(s)	567
BseMII	CTCAG	2 cut(s)	96, 132
BseNI	ACTGG	1 cut(s)	529
BseRI	GAGGAG	1 cut(s)	64
BseXI	GCAGC	4 cut(s)	16, 283, 617, 718
BseYI	CCCAGC	1 cut(s)	640
BsgI	GTGCAG	3 cut(s)	143, 624, 717
BshFI	GGCC	2 cut(s)	229, 467
BshNI	GGYRCC	1 cut(s)	145
BsiSI	CCGG	4 cut(s)	51, 116, 156, 464
BslFI	GGGAC	1 cut(s)	623
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	2 cut(s)	76, 549
BsmFI	GGGAC	1 cut(s)	623
BsnI	GGCC	2 cut(s)	229, 467
Bsp143I	GATC	3 cut(s)	205, 238, 439
Bsp19I	CCATGG	1 cut(s)	42
BspACI	CCGC	2 cut(s)	32, 344
BspANI	GGCC	2 cut(s)	229, 467
BspCNI	CTCAG	2 cut(s)	97, 133
BspLI	GGNNCC	4 cut(s)	6, 55, 147, 273
BspMAI	CTGCAG	1 cut(s)	697
BspPI	GGATC	1 cut(s)	213
BspT107I	GGYRCC	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	567
BsrFI	RCCGGY	1 cut(s)	463
BsrI	ACTGG	1 cut(s)	529
BssAI	RCCGGY	1 cut(s)	463
BssECI	CCNNGG	2 cut(s)	42, 176
BssMI	GATC	3 cut(s)	205, 238, 439
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	1 cut(s)	271
BstACI	GRCGYC	1 cut(s)	39
BstAPI	GCANNNNNTGC	3 cut(s)	578, 611, 728
BstC8I	GCNNGC	4 cut(s)	337, 370, 469, 515
BstDEI	CTNAG	2 cut(s)	105, 141
BstDSI	CCRYGG	2 cut(s)	42, 176
BstEII	GGTNACC	1 cut(s)	748
BstF5I	GGATG	1 cut(s)	559
BstH2I	RGCGCY	1 cut(s)	67
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	3 cut(s)	208, 241, 442
BstMAI	GTCTC	2 cut(s)	76, 549
BstMBI	GATC	3 cut(s)	205, 238, 439
BstMWI	GCNNNNNNNGC	8 cut(s)	38, 47, 305, 341, 578, 611, 620, 728
BstNI	CCWGG	1 cut(s)	231
BstNSI	RCATGY	2 cut(s)	372, 544
BstPI	GGTNACC	1 cut(s)	748
BstSCI	CCNGG	2 cut(s)	155, 229
BstSFI	CTRYAG	1 cut(s)	693
BstV1I	GCAGC	4 cut(s)	16, 283, 617, 718
BstV2I	GAAGAC	1 cut(s)	476
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BsuI	GTATCC	1 cut(s)	414
BsuRI	GGCC	2 cut(s)	229, 467
BtgI	CCRYGG	2 cut(s)	42, 176
BtgZI	GCGATG	1 cut(s)	76
BtrI	CACGTC	1 cut(s)	382
BtsCI	GGATG	1 cut(s)	559
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	3 cut(s)	138, 248, 339
Cac8I	GCNNGC	4 cut(s)	337, 370, 469, 515
CaiI	CAGNNNCTG	1 cut(s)	728
CfoI	GCGC	1 cut(s)	66
Cfr10I	RCCGGY	1 cut(s)	463
CseI	GACGC	2 cut(s)	35, 47
Csp6I	GTAC	1 cut(s)	146
CviAII	CATG	7 cut(s)	43, 191, 369, 410, 541, 595, 706
CviQI	GTAC	1 cut(s)	146
DdeI	CTNAG	2 cut(s)	105, 141
DpnI	GATC	3 cut(s)	207, 240, 441
DpnII	GATC	3 cut(s)	205, 238, 439
Eco130I	CCWWGG	1 cut(s)	42
Eco91I	GGTNACC	1 cut(s)	748
EcoO65I	GGTNACC	1 cut(s)	748
EcoRI	GAATTC	1 cut(s)	701
EcoRII	CCWGG	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	42
EcoT22I	ATGCAT	1 cut(s)	374
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	7 cut(s)	46, 194, 372, 413, 544, 598, 709
FaqI	GGGAC	1 cut(s)	623
FatI	CATG	7 cut(s)	42, 190, 368, 409, 540, 594, 705
FauI	CCCGC	1 cut(s)	337
FauNDI	CATATG	1 cut(s)	616
FblI	GTMKAC	1 cut(s)	521
Fnu4HI	GCNGC	4 cut(s)	30, 297, 606, 732
FokI	GGATG	1 cut(s)	566
Fsp4HI	GCNGC	4 cut(s)	30, 297, 606, 732
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	4 cut(s)	30, 297, 606, 732
GsaI	CCCAGC	1 cut(s)	644
HaeII	RGCGCY	1 cut(s)	67
HaeIII	GGCC	2 cut(s)	229, 467
HapII	CCGG	4 cut(s)	51, 116, 156, 464
HgaI	GACGC	2 cut(s)	35, 47
HhaI	GCGC	1 cut(s)	66
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	7 cut(s)	46, 194, 372, 413, 544, 598, 709
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HinfI	GANTC	2 cut(s)	152, 257
HpaII	CCGG	4 cut(s)	51, 116, 156, 464
HphI	GGTGA	3 cut(s)	389, 692, 742
Hpy166II	GTNNAC	1 cut(s)	522
Hpy188I	TCNGA	4 cut(s)	25, 165, 397, 790
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	1 cut(s)	522
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	411, 739
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	1 cut(s)	381
HpyF10VI	GCNNNNNNNGC	8 cut(s)	38, 47, 305, 341, 578, 611, 620, 728
HpyF3I	CTNAG	2 cut(s)	105, 141
HpySE526I	ACGT	1 cut(s)	381
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	7 cut(s)	46, 194, 372, 413, 544, 598, 709
HspAI	GCGC	1 cut(s)	64
KpnI	GGTACC	1 cut(s)	149
Kzo9I	GATC	3 cut(s)	205, 238, 439
LmnI	GCTCC	3 cut(s)	10, 53, 365
Lsp1109I	GCAGC	4 cut(s)	16, 283, 617, 718
LweI	GCATC	4 cut(s)	287, 401, 568, 569
MaeI	CTAG	1 cut(s)	221
MaeII	ACGT	1 cut(s)	381
MaeIII	GTNAC	5 cut(s)	286, 377, 661, 724, 748
MalI	GATC	3 cut(s)	207, 240, 441
MboI	GATC	3 cut(s)	205, 238, 439
MboII	GAAGA	2 cut(s)	476, 710
MflI	RGATCY	1 cut(s)	205
MluCI	AATT	5 cut(s)	213, 324, 585, 701, 712
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	8 cut(s)	18, 28, 85, 92, 100, 136, 592, 794
Mph1103I	ATGCAT	1 cut(s)	374
MseI	TTAA	7 cut(s)	132, 216, 354, 503, 588, 654, 771
MslI	CAYNNNNRTG	1 cut(s)	95
MspA1I	CMGCKG	1 cut(s)	608
MspI	CCGG	4 cut(s)	51, 116, 156, 464
MspR9I	CCNGG	2 cut(s)	157, 231
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	8 cut(s)	38, 47, 305, 341, 578, 611, 620, 728
NciI	CCSGG	1 cut(s)	157
NcoI	CCATGG	1 cut(s)	42
NdeI	CATATG	1 cut(s)	616
NdeII	GATC	3 cut(s)	205, 238, 439
NlaIII	CATG	7 cut(s)	46, 194, 372, 413, 544, 598, 709
NlaIV	GGNNCC	4 cut(s)	6, 55, 147, 273
NmeAIII	GCCGAG	1 cut(s)	82
NmuCI	GTSAC	4 cut(s)	286, 377, 661, 748
NsiI	ATGCAT	1 cut(s)	374
NspI	RCATGY	2 cut(s)	372, 544
PaeI	GCATGC	1 cut(s)	372
PciI	ACATGT	1 cut(s)	540
PfeI	GAWTC	1 cut(s)	257
PkrI	GCNGC	4 cut(s)	31, 298, 607, 733
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
PscI	ACATGT	1 cut(s)	540
PshBI	ATTAAT	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	229
PspEI	GGTNACC	1 cut(s)	748
PspFI	CCCAGC	1 cut(s)	640
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	4 cut(s)	6, 55, 147, 273
PsrI	GAACNNNNNNTAC	2 cut(s)	255, 287
PstI	CTGCAG	1 cut(s)	697
PstNI	CAGNNNCTG	1 cut(s)	728
PsuI	RGATCY	1 cut(s)	205
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
RseI	CAYNNNNRTG	1 cut(s)	95
SaqAI	TTAA	7 cut(s)	132, 216, 354, 503, 588, 654, 771
SatI	GCNGC	4 cut(s)	30, 297, 606, 732
Sau3AI	GATC	3 cut(s)	205, 238, 439
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	2 cut(s)	157, 231
SfaNI	GCATC	4 cut(s)	287, 401, 568, 569
SfcI	CTRYAG	1 cut(s)	693
SmiMI	CAYNNNNRTG	1 cut(s)	95
SphI	GCATGC	1 cut(s)	372
Sse9I	AATT	5 cut(s)	213, 324, 585, 701, 712
SsiI	CCGC	2 cut(s)	32, 344
SspI	AATATT	1 cut(s)	648
SspMI	CTAG	1 cut(s)	221
StyD4I	CCNGG	2 cut(s)	155, 229
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	1 cut(s)	384
TaqI	TCGA	1 cut(s)	675
TasI	AATT	5 cut(s)	213, 324, 585, 701, 712
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	7 cut(s)	132, 216, 354, 503, 588, 654, 771
Tru9I	TTAA	7 cut(s)	132, 216, 354, 503, 588, 654, 771
TscAI	CASTG	3 cut(s)	145, 248, 346
TseFI	GTSAC	4 cut(s)	286, 377, 661, 748
TseI	GCWGC	4 cut(s)	29, 296, 605, 731
Tsp45I	GTSAC	4 cut(s)	286, 377, 661, 748
TspDTI	ATGAA	2 cut(s)	570, 694
TspGWI	ACGGA	3 cut(s)	67, 165, 789
TspRI	CASTG	3 cut(s)	145, 248, 346
VspI	ATTAAT	1 cut(s)	216
XapI	RAATTY	2 cut(s)	701, 712
XceI	RCATGY	2 cut(s)	372, 544
XmiI	GTMKAC	1 cut(s)	521
XspI	CTAG	1 cut(s)	221
Zsp2I	ATGCAT	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.