Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005733

Physical Location & Seq

Genomic Coordinates Forward (+)

16944878 .. 16946266

Gene Structure 1389 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G35770.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGAAACCACTGCTTTTAACACAACATCACGAATTGGAAACTGGTCATCGGCTATTTCTCCACCTCTACAAACATGTGGATCTTTCAAGTGCCAATTACCAACACGAAGAGGTGTTATTGTAGCTGATCTTCGAAACTCAAACTTCCGATGGAGGAAAGCAACGACAACAAGCAGAGGAAATGTTGCAGCAGAGGCAGTTAAAATTCCTACGTCAGTACCAGTAAGAGTGGCGCGTGAGCTAGCTCAAGCAGGATACCGCTATCTCGACGTGAGGACACCAGACGAATTCAGCATCGGACATCCGACTAGAGCCATCAACGTACCTTACATGTACAGAGTCGGATCAGGAATGGTTAAGAACCCGAGTTTTCTAAGACAGGTCTCGTCCCACTTCAGGAAACACGATGAAATCATAATCGGTTGTGAGAGCGGTCAAATGTCATTTATGGCCTCAACTGATCTTCTCACTGCTGGCTTCACGGCGATCACAGACATTGCTGGAGGATACGTCGCTTGGACAGAGAATGAGCTGCCGGTAGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0007568 GO:0008150 GO:0009507 GO:0009536 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0016740 GO:0016782 GO:0016783 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

182

Amino Acids

20.08

Weight (kDa)

9.15

Isoelectric Point (pI)

36.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35770 AT4G35770 AT4G35770 AT4G35770 AT4G35770 AT4G35770 AT5G66040 AT5G66040
fragaria_vesca	FvH4_1g10930 FvH4_1g10930 FvH4_1g10930
malus_domestica	MD02G1122400.v1.1 MD15G1236600.v1.1
prunus_persica	Prupe.7G176200_v2.0.a1
pyrus_communis	pycom02g09530 pycom15g21030
rosa_chinensis	RchiOBHm_Chr2g0098191
rosa_laevigata	RLG00000016773
rosa_multiflora	Rmu_co8397565.1_g000001 Rmu_sc0002559.1_g000004 Rmu_sc0009178.1_g000006
rosa_roxburghii	Rroxscaffold_2G00144190
rosa_rugosa	Rorug02G0071000 Rorug02G0071100
rosa_samantha	Rh2BG121200 Rh2CG122800 Rh2DG122800
rosa_wichuraiana	Rw2G009250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	432
AccII	CGCG	1 cut(s)	235
AciI	CCGC	2 cut(s)	259, 432
AclWI	GGATC	2 cut(s)	88, 352
AcsI	RAATTY	2 cut(s)	204, 287
AcuI	CTGAAG	1 cut(s)	379
AfaI	GTAC	3 cut(s)	219, 324, 335
AfiI	CCNNNNNNNGG	1 cut(s)	396
AflIII	ACRYGT	2 cut(s)	74, 330
AgsI	TTSAA	1 cut(s)	88
AjiI	CACGTC	1 cut(s)	271
AluBI	AGCT	4 cut(s)	125, 241, 245, 532
AluI	AGCT	4 cut(s)	125, 241, 245, 532
Alw26I	GTCTC	1 cut(s)	388
AlwI	GGATC	2 cut(s)	88, 352
Ama87I	CYCGRG	1 cut(s)	364
AoxI	GGCC	1 cut(s)	450
ApeKI	GCWGC	2 cut(s)	188, 532
ApoI	RAATTY	2 cut(s)	204, 287
AspLEI	GCGC	1 cut(s)	235
AsuII	TTCGAA	1 cut(s)	133
AsuNHI	GCTAGC	1 cut(s)	241
AvaI	CYCGRG	1 cut(s)	364
BaeI	ACNNNNGTAYC	2 cut(s)	201, 234
BarI	GAAGNNNNNNTAC	2 cut(s)	114, 146
BbvI	GCAGC	2 cut(s)	200, 519
BccI	CCATC	2 cut(s)	144, 323
BceAI	ACGGC	1 cut(s)	498
BciVI	GTATCC	2 cut(s)	248, 500
BcoDI	GTCTC	1 cut(s)	388
BfaI	CTAG	2 cut(s)	242, 309
BfuI	GTATCC	2 cut(s)	248, 500
BisI	GCNGC	2 cut(s)	189, 533
BlsI	GCNGC	2 cut(s)	190, 534
BmeT110I	CYCGRG	1 cut(s)	364
BmgBI	CACGTC	1 cut(s)	271
BmsI	GCATC	1 cut(s)	303
BmtI	GCTAGC	1 cut(s)	245
BpmI	CTGGAG	1 cut(s)	522
Bpu14I	TTCGAA	1 cut(s)	133
BpuEI	CTTGAG	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	388
BsaXI	ACNNNNNCTCC	2 cut(s)	495, 525
Bsc4I	CCNNNNNNNGG	1 cut(s)	396
Bse118I	RCCGGY	1 cut(s)	535
Bse1I	ACTGG	2 cut(s)	47, 221
Bse3DI	GCAATG	1 cut(s)	495
BseGI	GGATG	1 cut(s)	301
BseLI	CCNNNNNNNGG	1 cut(s)	396
BseMI	GCAATG	1 cut(s)	495
BseNI	ACTGG	2 cut(s)	47, 221
BseXI	GCAGC	2 cut(s)	200, 519
Bsh1236I	CGCG	1 cut(s)	235
BshFI	GGCC	1 cut(s)	452
BsiHKCI	CYCGRG	1 cut(s)	364
BsiSI	CCGG	1 cut(s)	536
BslFI	GGGAC	1 cut(s)	373
BslI	CCNNNNNNNGG	1 cut(s)	396
BsmAI	GTCTC	1 cut(s)	388
BsmFI	GGGAC	1 cut(s)	373
BsnI	GGCC	1 cut(s)	452
Bso31I	GGTCTC	1 cut(s)	388
BsoBI	CYCGRG	1 cut(s)	364
Bsp119I	TTCGAA	1 cut(s)	133
Bsp1407I	TGTACA	1 cut(s)	333
Bsp143I	GATC	5 cut(s)	80, 127, 344, 460, 486
BspACI	CCGC	2 cut(s)	259, 432
BspANI	GGCC	1 cut(s)	452
BspFNI	CGCG	1 cut(s)	235
BspOI	GCTAGC	1 cut(s)	245
BspPI	GGATC	2 cut(s)	88, 352
BspT104I	TTCGAA	1 cut(s)	133
BspTNI	GGTCTC	1 cut(s)	388
BsrBI	CCGCTC	1 cut(s)	432
BsrDI	GCAATG	1 cut(s)	495
BsrFI	RCCGGY	1 cut(s)	535
BsrGI	TGTACA	1 cut(s)	333
BsrI	ACTGG	2 cut(s)	47, 221
BssAI	RCCGGY	1 cut(s)	535
BssMI	GATC	5 cut(s)	80, 127, 344, 460, 486
Bst6I	CTCTTC	2 cut(s)	103, 537
BstAUI	TGTACA	1 cut(s)	333
BstBI	TTCGAA	1 cut(s)	133
BstC8I	GCNNGC	2 cut(s)	243, 475
BstDEI	CTNAG	1 cut(s)	374
BstF5I	GGATG	1 cut(s)	301
BstFNI	CGCG	1 cut(s)	235
BstHHI	GCGC	1 cut(s)	235
BstKTI	GATC	5 cut(s)	83, 130, 347, 463, 489
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	5 cut(s)	80, 127, 344, 460, 486
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNSI	RCATGY	2 cut(s)	78, 334
BstUI	CGCG	1 cut(s)	235
BstV1I	GCAGC	2 cut(s)	200, 519
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BsuI	GTATCC	2 cut(s)	248, 500
BsuRI	GGCC	1 cut(s)	452
BtrI	CACGTC	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	301
BtsI	GCAGTG	2 cut(s)	9, 468
BtsIMutI	CAGTG	2 cut(s)	9, 468
Cac8I	GCNNGC	2 cut(s)	243, 475
CfoI	GCGC	1 cut(s)	235
Cfr10I	RCCGGY	1 cut(s)	535
Csp6I	GTAC	3 cut(s)	218, 323, 334
CviAII	CATG	2 cut(s)	75, 331
CviJI	RGCY	8 cut(s)	53, 125, 241, 245, 314, 452, 477, 532
CviKI_1	RGCY	8 cut(s)	53, 125, 241, 245, 314, 452, 477, 532
CviQI	GTAC	3 cut(s)	218, 323, 334
DdeI	CTNAG	1 cut(s)	374
DpnI	GATC	5 cut(s)	82, 129, 346, 462, 488
DpnII	GATC	5 cut(s)	80, 127, 344, 460, 486
Eam1104I	CTCTTC	2 cut(s)	103, 537
EarI	CTCTTC	2 cut(s)	103, 537
Eco31I	GGTCTC	1 cut(s)	388
Eco57I	CTGAAG	1 cut(s)	379
Eco88I	CYCGRG	1 cut(s)	364
EcoRI	GAATTC	1 cut(s)	287
FaeI	CATG	2 cut(s)	78, 334
FaiI	YATR	4 cut(s)	76, 332, 416, 449
FaqI	GGGAC	1 cut(s)	373
FatI	CATG	2 cut(s)	74, 330
Fnu4HI	GCNGC	2 cut(s)	189, 533
FokI	GGATG	1 cut(s)	288
Fsp4HI	GCNGC	2 cut(s)	189, 533
FspBI	CTAG	2 cut(s)	242, 309
GlaI	GCGC	1 cut(s)	234
GluI	GCNGC	2 cut(s)	189, 533
GsuI	CTGGAG	1 cut(s)	522
HaeIII	GGCC	1 cut(s)	452
HapII	CCGG	1 cut(s)	536
HhaI	GCGC	1 cut(s)	235
Hin1II	CATG	2 cut(s)	78, 334
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HinfI	GANTC	1 cut(s)	339
HpaII	CCGG	1 cut(s)	536
Hpy188I	TCNGA	4 cut(s)	149, 299, 306, 344
Hpy188III	TCNNGA	4 cut(s)	30, 266, 348, 397
Hpy99I	CGWCG	2 cut(s)	272, 515
HpyCH4IV	ACGT	4 cut(s)	212, 270, 321, 510
HpyCH4V	TGCA	1 cut(s)	188
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	1 cut(s)	374
HpySE526I	ACGT	4 cut(s)	212, 270, 321, 510
Hsp92II	CATG	2 cut(s)	78, 334
HspAI	GCGC	1 cut(s)	233
Kzo9I	GATC	5 cut(s)	80, 127, 344, 460, 486
LpnPI	CCDG	9 cut(s)	28, 234, 237, 294, 333, 365, 382, 459, 486
Lsp1109I	GCAGC	2 cut(s)	200, 519
LweI	GCATC	1 cut(s)	303
MaeI	CTAG	2 cut(s)	242, 309
MaeII	ACGT	4 cut(s)	212, 270, 321, 510
MalI	GATC	5 cut(s)	82, 129, 346, 462, 488
MbiI	CCGCTC	1 cut(s)	432
MboI	GATC	5 cut(s)	80, 127, 344, 460, 486
MboII	GAAGA	3 cut(s)	120, 122, 455
MflI	RGATCY	1 cut(s)	80
MluCI	AATT	4 cut(s)	33, 95, 204, 287
MlyI	GAGTC	1 cut(s)	348
MmeI	TCCRAC	2 cut(s)	322, 329
MnlI	CCTC	8 cut(s)	75, 104, 147, 170, 187, 267, 463, 497
MseI	TTAA	3 cut(s)	18, 201, 357
MspI	CCGG	1 cut(s)	536
MvnI	CGCG	1 cut(s)	235
MwoI	GCNNNNNNNGC	1 cut(s)	194
NdeII	GATC	5 cut(s)	80, 127, 344, 460, 486
NheI	GCTAGC	1 cut(s)	241
NlaIII	CATG	2 cut(s)	78, 334
NspI	RCATGY	2 cut(s)	78, 334
NspV	TTCGAA	1 cut(s)	133
PciI	ACATGT	2 cut(s)	74, 330
PkrI	GCNGC	2 cut(s)	190, 534
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
PscI	ACATGT	2 cut(s)	74, 330
PsuI	RGATCY	1 cut(s)	80
RsaI	GTAC	3 cut(s)	219, 324, 335
RsaNI	GTAC	3 cut(s)	218, 323, 334
SaqAI	TTAA	3 cut(s)	18, 201, 357
SatI	GCNGC	2 cut(s)	189, 533
Sau3AI	GATC	5 cut(s)	80, 127, 344, 460, 486
SchI	GAGTC	1 cut(s)	348
SfaNI	GCATC	1 cut(s)	303
SfuI	TTCGAA	1 cut(s)	133
SmlI	CTYRAG	1 cut(s)	246
SmoI	CTYRAG	1 cut(s)	246
Sse9I	AATT	4 cut(s)	33, 95, 204, 287
SsiI	CCGC	2 cut(s)	259, 432
SspMI	CTAG	2 cut(s)	242, 309
TaiI	ACGT	4 cut(s)	215, 273, 324, 513
TaqI	TCGA	2 cut(s)	133, 267
TasI	AATT	4 cut(s)	33, 95, 204, 287
TatI	WGTACW	1 cut(s)	333
Tru1I	TTAA	3 cut(s)	18, 201, 357
Tru9I	TTAA	3 cut(s)	18, 201, 357
TscAI	CASTG	2 cut(s)	16, 475
TseI	GCWGC	2 cut(s)	188, 532
TspDTI	ATGAA	1 cut(s)	423
TspRI	CASTG	2 cut(s)	16, 475
XapI	RAATTY	2 cut(s)	204, 287
XceI	RCATGY	2 cut(s)	78, 334
XspI	CTAG	2 cut(s)	242, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.