Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0005733

Physical Location & Seq

Genomic Coordinates Forward (+)

9961174 .. 9963615

Gene Structure 2442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1122400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGTGGCGATTTCGTTTGTGTATTCTTCTTGCCTTACTGGCTCTGCTGCAATTCAACCCCCTTCGCTTTTTTCTTCTCAAAATCCCAACCACAAATCTTCGCTTTCTCTAAACGGGAAGAGACTCGGCACTGGACTCCAAAACAAGAACTTCAACTTCTGTGTGAAAGCTGCTCAGAAGAGAAATTTGGAGGCTGTGGGGGTCCCAACTTCGGTGCCGGTTCGTGTGGCACATGAGCTTCTTCAAGCTGGACACAAATATTTGGATGTCAGGACTCCTGAGGAGTTCAGTGCAGGACATGCCCCTGGGGCTGTCAACATTCCCTACTTGTACAAAGTTGGATCAGGGATGACAAAGAACCAAGAATTTCTAGAACAAGTGTCATCACATTTCAGAAAACATGATGAGATTATAGTTGGATGCCAGCTTGGGAAAAGATCGATGATGGCTGCAACTGATCTTGTAGCTTCTGGTTTCACTGGCATTACAGATATAGCTGGTGGGTATGCCGCTTGGACACAGTGTGGACTTCCAACAGAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0007568 GO:0008150 GO:0009507 GO:0009536 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0016740 GO:0016782 GO:0016783 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

182

Amino Acids

19.38

Weight (kDa)

8.93

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhodanese	PF00581	78 - 174	8.6e-17	Rhodanese-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35770 AT4G35770 AT4G35770 AT4G35770 AT4G35770 AT4G35770 AT5G66040 AT5G66040
fragaria_vesca	FvH4_1g10930 FvH4_1g10930 FvH4_1g10930
malus_domestica	MD02G1122400.v1.1 MD15G1236600.v1.1
prunus_persica	Prupe.7G176200_v2.0.a1
pyrus_communis	pycom02g09530 pycom15g21030
rosa_chinensis	RchiOBHm_Chr2g0098191
rosa_laevigata	RLG00000016773
rosa_multiflora	Rmu_co8397565.1_g000001 Rmu_sc0002559.1_g000004 Rmu_sc0009178.1_g000006
rosa_roxburghii	Rroxscaffold_2G00144190
rosa_rugosa	Rorug02G0071000 Rorug02G0071100
rosa_samantha	Rh2BG121200 Rh2CG122800 Rh2DG122800
rosa_wichuraiana	Rw2G009250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	214
AciI	CCGC	1 cut(s)	510
AclWI	GGATC	1 cut(s)	349
AcsI	RAATTY	2 cut(s)	184, 365
AdeI	CACNNNGTG	1 cut(s)	524
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	1 cut(s)	211
AgsI	TTSAA	3 cut(s)	56, 154, 245
AjnI	CCWGG	1 cut(s)	304
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AluBI	AGCT	6 cut(s)	170, 238, 248, 427, 467, 497
AluI	AGCT	6 cut(s)	170, 238, 248, 427, 467, 497
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	1 cut(s)	349
ApeKI	GCWGC	3 cut(s)	47, 170, 449
ApoI	RAATTY	2 cut(s)	184, 365
AspS9I	GGNCC	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	202
AxyI	CCTNAGG	1 cut(s)	279
BanI	GGYRCC	1 cut(s)	214
BbvI	GCAGC	3 cut(s)	34, 157, 436
BccI	CCATC	1 cut(s)	439
BciT130I	CCWGG	1 cut(s)	306
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	1 cut(s)	371
BglI	GCCNNNNNGGC	2 cut(s)	39, 308
BisI	GCNGC	4 cut(s)	48, 171, 450, 510
BlsI	GCNGC	4 cut(s)	49, 172, 451, 511
Bme1390I	CCNGG	1 cut(s)	306
Bme18I	GGWCC	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	202
BmiI	GGNNCC	3 cut(s)	203, 204, 216
BmrFI	CCNGG	1 cut(s)	306
BmsI	GCATC	1 cut(s)	410
Bsa29I	ATCGAT	1 cut(s)	440
BsaJI	CCNNGG	2 cut(s)	304, 305
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse118I	RCCGGY	1 cut(s)	217
Bse1I	ACTGG	3 cut(s)	43, 136, 484
Bse21I	CCTNAGG	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	306
BseCI	ATCGAT	1 cut(s)	440
BseDI	CCNNGG	2 cut(s)	304, 305
BseGI	GGATG	3 cut(s)	271, 354, 425
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMII	CTCAG	2 cut(s)	188, 270
BseNI	ACTGG	3 cut(s)	43, 136, 484
BseRI	GAGGAG	1 cut(s)	296
BseXI	GCAGC	3 cut(s)	34, 157, 436
BsgI	GTGCAG	1 cut(s)	312
BshNI	GGYRCC	1 cut(s)	214
BshVI	ATCGAT	1 cut(s)	440
BsiSI	CCGG	1 cut(s)	218
BslFI	GGGAC	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	188
Bsp1407I	TGTACA	1 cut(s)	330
Bsp143I	GATC	3 cut(s)	341, 437, 457
BspACI	CCGC	1 cut(s)	510
BspCNI	CTCAG	2 cut(s)	187, 271
BspDI	ATCGAT	1 cut(s)	440
BspLI	GGNNCC	3 cut(s)	203, 204, 216
BspPI	GGATC	1 cut(s)	349
BspT107I	GGYRCC	1 cut(s)	214
BsrFI	RCCGGY	1 cut(s)	217
BsrGI	TGTACA	1 cut(s)	330
BsrI	ACTGG	3 cut(s)	43, 136, 484
BssAI	RCCGGY	1 cut(s)	217
BssECI	CCNNGG	2 cut(s)	304, 305
BssMI	GATC	3 cut(s)	341, 437, 457
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	522
Bst6I	CTCTTC	2 cut(s)	113, 173
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstAUI	TGTACA	1 cut(s)	330
BstC8I	GCNNGC	1 cut(s)	425
BstDEI	CTNAG	2 cut(s)	174, 279
BstF5I	GGATG	3 cut(s)	271, 354, 425
BstKTI	GATC	3 cut(s)	344, 440, 460
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	3 cut(s)	341, 437, 457
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 299, 308
BstNI	CCWGG	1 cut(s)	306
BstNSI	RCATGY	1 cut(s)	302
BstSCI	CCNGG	1 cut(s)	304
BstV1I	GCAGC	3 cut(s)	34, 157, 436
Bsu15I	ATCGAT	1 cut(s)	440
Bsu36I	CCTNAGG	1 cut(s)	279
BsuTUI	ATCGAT	1 cut(s)	440
BtsCI	GGATG	3 cut(s)	271, 354, 425
BtsIMutI	CAGTG	4 cut(s)	129, 295, 477, 527
Cac8I	GCNNGC	1 cut(s)	425
Cfr10I	RCCGGY	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	202
ClaI	ATCGAT	1 cut(s)	440
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	3 cut(s)	233, 299, 401
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	2 cut(s)	174, 279
DpnI	GATC	3 cut(s)	343, 439, 459
DpnII	GATC	3 cut(s)	341, 437, 457
DraIII	CACNNNGTG	1 cut(s)	524
Eam1104I	CTCTTC	2 cut(s)	113, 173
EarI	CTCTTC	2 cut(s)	113, 173
Eco47I	GGWCC	1 cut(s)	202
Eco81I	CCTNAGG	1 cut(s)	279
EcoO109I	RGGNCCY	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	304
FaeI	CATG	3 cut(s)	236, 302, 404
FaiI	YATR	7 cut(s)	234, 300, 402, 413, 494, 507, 544
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	3 cut(s)	232, 298, 400
Fnu4HI	GCNGC	4 cut(s)	48, 171, 450, 510
FokI	GGATG	3 cut(s)	278, 361, 432
Fsp4HI	GCNGC	4 cut(s)	48, 171, 450, 510
FspBI	CTAG	1 cut(s)	371
GluI	GCNGC	4 cut(s)	48, 171, 450, 510
HapII	CCGG	1 cut(s)	218
Hin1II	CATG	3 cut(s)	236, 302, 404
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	3 cut(s)	123, 135, 274
HpaII	CCGG	1 cut(s)	218
Hpy166II	GTNNAC	2 cut(s)	316, 527
Hpy188I	TCNGA	2 cut(s)	177, 395
Hpy188III	TCNNGA	3 cut(s)	271, 278, 371
Hpy8I	GTNNAC	2 cut(s)	316, 527
HpyAV	CCTTC	1 cut(s)	72
HpyCH4III	ACNGT	1 cut(s)	522
HpyCH4V	TGCA	3 cut(s)	50, 293, 452
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 299, 308
HpyF3I	CTNAG	2 cut(s)	174, 279
Hsp92II	CATG	3 cut(s)	236, 302, 404
KflI	GGGWCCC	1 cut(s)	202
Kzo9I	GATC	3 cut(s)	341, 437, 457
Lsp1109I	GCAGC	3 cut(s)	34, 157, 436
LweI	GCATC	1 cut(s)	410
MaeI	CTAG	1 cut(s)	371
MalI	GATC	3 cut(s)	343, 439, 459
MboI	GATC	3 cut(s)	341, 437, 457
MboII	GAAGA	6 cut(s)	18, 66, 90, 130, 190, 233
MluCI	AATT	3 cut(s)	51, 184, 365
MlyI	GAGTC	3 cut(s)	117, 129, 268
MmeI	TCCRAC	2 cut(s)	319, 397
MnlI	CCTC	2 cut(s)	184, 274
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	306
MwoI	GCNNNNNNNGC	3 cut(s)	39, 299, 308
NdeII	GATC	3 cut(s)	341, 437, 457
NlaIII	CATG	3 cut(s)	236, 302, 404
NlaIV	GGNNCC	3 cut(s)	203, 204, 216
NmeAIII	GCCGAG	1 cut(s)	105
NspI	RCATGY	1 cut(s)	302
PasI	CCCWGGG	1 cut(s)	305
PkrI	GCNGC	4 cut(s)	49, 172, 451, 511
PleI	GAGTC	3 cut(s)	117, 129, 268
PpsI	GAGTC	3 cut(s)	117, 129, 268
PpuMI	RGGWCCY	1 cut(s)	202
Psp5II	RGGWCCY	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	3 cut(s)	203, 204, 216
PspPI	GGNCC	1 cut(s)	202
PspPPI	RGGWCCY	1 cut(s)	202
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
SatI	GCNGC	4 cut(s)	48, 171, 450, 510
Sau3AI	GATC	3 cut(s)	341, 437, 457
Sau96I	GGNCC	1 cut(s)	202
SchI	GAGTC	3 cut(s)	117, 129, 268
ScrFI	CCNGG	1 cut(s)	306
SetI	ASST	6 cut(s)	172, 240, 250, 429, 469, 499
SfaNI	GCATC	1 cut(s)	410
SinI	GGWCC	1 cut(s)	202
Sse9I	AATT	3 cut(s)	51, 184, 365
SsiI	CCGC	1 cut(s)	510
SspI	AATATT	1 cut(s)	260
SspMI	CTAG	1 cut(s)	371
StyD4I	CCNGG	1 cut(s)	304
TaaI	ACNGT	1 cut(s)	522
TaqI	TCGA	1 cut(s)	440
TasI	AATT	3 cut(s)	51, 184, 365
TatI	WGTACW	1 cut(s)	330
TauI	GCSGC	1 cut(s)	512
TscAI	CASTG	4 cut(s)	136, 295, 484, 527
TseI	GCWGC	3 cut(s)	47, 170, 449
TspRI	CASTG	4 cut(s)	136, 295, 484, 527
VpaK11BI	GGWCC	1 cut(s)	202
XapI	RAATTY	2 cut(s)	184, 365
XbaI	TCTAGA	1 cut(s)	370
XceI	RCATGY	1 cut(s)	302
XspI	CTAG	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.