Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8397565.1

Orthogroup ID

OG0005733

Physical Location & Seq

Genomic Coordinates Forward (+)

441 .. 1047

Gene Structure 607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8397565.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atgtcttctttgtccacgtcttgcttcagtggttctgtacttcgaatcccttctcttctttctcctcagaatctcaatcagaggtctttgttgtcactaactgggaacccagatcgaattcgtggcaatcggattgcatgcaagaacttaaacttctgttcgaaggctagtctgagagggaatttggaggccaccggagttccgacgtcggtgccggtgcgtgtggctcacgagcttcttctagccggacacaagtatttggatgtcaggactcctgaagagtttagtgcaggacatccttctggtgcagttaacattccttacttgtacaaagttggatcaggttcaatttttgttcttccacaccttcttcttcttcttcactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0007568 GO:0008150 GO:0009507 GO:0009536 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0016740 GO:0016782 GO:0016783 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

128

Amino Acids

13.78

Weight (kDa)

9.73

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35770 AT4G35770 AT4G35770 AT4G35770 AT4G35770 AT4G35770 AT5G66040 AT5G66040
fragaria_vesca	FvH4_1g10930 FvH4_1g10930 FvH4_1g10930
malus_domestica	MD02G1122400.v1.1 MD15G1236600.v1.1
prunus_persica	Prupe.7G176200_v2.0.a1
pyrus_communis	pycom02g09530 pycom15g21030
rosa_chinensis	RchiOBHm_Chr2g0098191
rosa_laevigata	RLG00000016773
rosa_multiflora	Rmu_co8397565.1_g000001 Rmu_sc0002559.1_g000004 Rmu_sc0009178.1_g000006
rosa_roxburghii	Rroxscaffold_2G00144190
rosa_rugosa	Rorug02G0071000 Rorug02G0071100
rosa_samantha	Rh2BG121200 Rh2CG122800 Rh2DG122800
rosa_wichuraiana	Rw2G009250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	209
AccB1I	GGYRCC	1 cut(s)	211
AclWI	GGATC	1 cut(s)	346
AcsI	RAATTY	2 cut(s)	117, 181
AcuI	CTGAAG	2 cut(s)	10, 297
AcyI	GRCGYC	1 cut(s)	206
AfaI	GTAC	2 cut(s)	39, 329
AgsI	TTSAA	1 cut(s)	348
AjiI	CACGTC	1 cut(s)	18
AluBI	AGCT	1 cut(s)	235
AluI	AGCT	1 cut(s)	235
AlwI	GGATC	1 cut(s)	346
AoxI	GGCC	1 cut(s)	189
ApoI	RAATTY	2 cut(s)	117, 181
Asp700I	GAANNNNTTC	1 cut(s)	49
AsuII	TTCGAA	2 cut(s)	43, 161
BanI	GGYRCC	1 cut(s)	211
BauI	CACGAG	1 cut(s)	230
BcgI	CGANNNNNNTGC	2 cut(s)	193, 227
BfaI	CTAG	3 cut(s)	168, 242, 385
BmgBI	CACGTC	1 cut(s)	18
BmiI	GGNNCC	2 cut(s)	107, 213
BmrI	ACTGGG	1 cut(s)	111
BmuI	ACTGGG	1 cut(s)	111
Bpu14I	TTCGAA	2 cut(s)	43, 161
BsaHI	GRCGYC	1 cut(s)	206
BsaWI	WCCGGW	1 cut(s)	194
Bse118I	RCCGGY	1 cut(s)	214
Bse1I	ACTGG	1 cut(s)	106
BseGI	GGATG	2 cut(s)	268, 295
BseMII	CTCAG	2 cut(s)	80, 164
BseNI	ACTGG	1 cut(s)	106
BseRI	GAGGAG	1 cut(s)	54
BsgI	GTGCAG	2 cut(s)	309, 327
BshFI	GGCC	1 cut(s)	191
BshNI	GGYRCC	1 cut(s)	211
BsiSI	CCGG	3 cut(s)	195, 215, 246
BsnI	GGCC	1 cut(s)	191
Bsp119I	TTCGAA	2 cut(s)	43, 161
Bsp1407I	TGTACA	1 cut(s)	327
Bsp143I	GATC	2 cut(s)	112, 338
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	2 cut(s)	79, 165
BspLI	GGNNCC	2 cut(s)	107, 213
BspPI	GGATC	1 cut(s)	346
BspT104I	TTCGAA	2 cut(s)	43, 161
BspT107I	GGYRCC	1 cut(s)	211
BsrFI	RCCGGY	1 cut(s)	214
BsrGI	TGTACA	1 cut(s)	327
BsrI	ACTGG	1 cut(s)	106
BssAI	RCCGGY	1 cut(s)	214
BssMI	GATC	2 cut(s)	112, 338
BssNI	GRCGYC	1 cut(s)	206
BssSI	CACGAG	1 cut(s)	230
Bst2BI	CACGAG	1 cut(s)	230
Bst6I	CTCTTC	2 cut(s)	60, 273
BstACI	GRCGYC	1 cut(s)	206
BstAUI	TGTACA	1 cut(s)	327
BstBI	TTCGAA	2 cut(s)	43, 161
BstC8I	GCNNGC	1 cut(s)	139
BstDEI	CTNAG	2 cut(s)	66, 173
BstF5I	GGATG	2 cut(s)	268, 295
BstKTI	GATC	2 cut(s)	115, 341
BstMBI	GATC	2 cut(s)	112, 338
BstNSI	RCATGY	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	191
BtrI	CACGTC	1 cut(s)	18
BtsCI	GGATG	2 cut(s)	268, 295
BtsIMutI	CAGTG	1 cut(s)	34
Cac8I	GCNNGC	1 cut(s)	139
Cfr10I	RCCGGY	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	38, 328
CviAII	CATG	1 cut(s)	138
CviJI	RGCY	5 cut(s)	167, 191, 227, 235, 245
CviKI_1	RGCY	5 cut(s)	167, 191, 227, 235, 245
CviQI	GTAC	2 cut(s)	38, 328
DdeI	CTNAG	2 cut(s)	66, 173
DpnI	GATC	2 cut(s)	114, 340
DpnII	GATC	2 cut(s)	112, 338
Eam1104I	CTCTTC	2 cut(s)	60, 273
EarI	CTCTTC	2 cut(s)	60, 273
Eco57I	CTGAAG	2 cut(s)	10, 297
EcoRI	GAATTC	1 cut(s)	117
FaeI	CATG	1 cut(s)	141
FaiI	YATR	1 cut(s)	139
FatI	CATG	1 cut(s)	137
FokI	GGATG	2 cut(s)	275, 282
FspBI	CTAG	3 cut(s)	168, 242, 385
HaeIII	GGCC	1 cut(s)	191
HapII	CCGG	3 cut(s)	195, 215, 246
Hin1I	GRCGYC	1 cut(s)	206
Hin1II	CATG	1 cut(s)	141
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HinfI	GANTC	3 cut(s)	45, 70, 271
HpaI	GTTAAC	1 cut(s)	313
HpaII	CCGG	3 cut(s)	195, 215, 246
Hpy166II	GTNNAC	2 cut(s)	15, 313
Hpy188I	TCNGA	5 cut(s)	69, 81, 132, 174, 204
Hpy188III	TCNNGA	3 cut(s)	230, 268, 275
Hpy8I	GTNNAC	2 cut(s)	15, 313
Hpy99I	CGWCG	2 cut(s)	208, 211
HpyAV	CCTTC	4 cut(s)	60, 157, 309, 377
HpyCH4IV	ACGT	2 cut(s)	17, 206
HpyCH4V	TGCA	4 cut(s)	137, 141, 290, 308
HpyF3I	CTNAG	2 cut(s)	66, 173
HpySE526I	ACGT	2 cut(s)	17, 206
Hsp92I	GRCGYC	1 cut(s)	206
Hsp92II	CATG	1 cut(s)	141
KspAI	GTTAAC	1 cut(s)	313
Kzo9I	GATC	2 cut(s)	112, 338
MaeI	CTAG	3 cut(s)	168, 242, 385
MaeII	ACGT	2 cut(s)	17, 206
MaeIII	GTNAC	1 cut(s)	93
MalI	GATC	2 cut(s)	114, 340
MboI	GATC	2 cut(s)	112, 338
MboII	GAAGA	8 cut(s)	47, 230, 290, 350, 362, 365, 368, 371
MluCI	AATT	3 cut(s)	117, 181, 348
MlyI	GAGTC	1 cut(s)	265
MmeI	TCCRAC	2 cut(s)	227, 316
MnlI	CCTC	4 cut(s)	75, 75, 170, 181
MroXI	GAANNNNTTC	1 cut(s)	49
MseI	TTAA	2 cut(s)	149, 312
MspI	CCGG	3 cut(s)	195, 215, 246
NdeII	GATC	2 cut(s)	112, 338
NlaIII	CATG	1 cut(s)	141
NlaIV	GGNNCC	2 cut(s)	107, 213
NmuCI	GTSAC	1 cut(s)	93
NspI	RCATGY	1 cut(s)	141
NspV	TTCGAA	2 cut(s)	43, 161
PaeI	GCATGC	1 cut(s)	141
PdmI	GAANNNNTTC	1 cut(s)	49
PfeI	GAWTC	2 cut(s)	45, 70
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
PspN4I	GGNNCC	2 cut(s)	107, 213
RsaI	GTAC	2 cut(s)	39, 329
RsaNI	GTAC	2 cut(s)	38, 328
SaqAI	TTAA	2 cut(s)	149, 312
Sau3AI	GATC	2 cut(s)	112, 338
SchI	GAGTC	1 cut(s)	265
SetI	ASST	6 cut(s)	20, 86, 209, 237, 346, 369
SfuI	TTCGAA	2 cut(s)	43, 161
SphI	GCATGC	1 cut(s)	141
Sse9I	AATT	3 cut(s)	117, 181, 348
SspMI	CTAG	3 cut(s)	168, 242, 385
TaiI	ACGT	2 cut(s)	20, 209
TaqI	TCGA	3 cut(s)	43, 115, 161
TasI	AATT	3 cut(s)	117, 181, 348
TatI	WGTACW	2 cut(s)	37, 327
TfiI	GAWTC	2 cut(s)	45, 70
Tru1I	TTAA	2 cut(s)	149, 312
Tru9I	TTAA	2 cut(s)	149, 312
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	1 cut(s)	93
Tsp45I	GTSAC	1 cut(s)	93
TspRI	CASTG	1 cut(s)	34
XapI	RAATTY	2 cut(s)	117, 181
XceI	RCATGY	1 cut(s)	141
XmnI	GAANNNNTTC	1 cut(s)	49
XspI	CTAG	3 cut(s)	168, 242, 385
ZraI	GACGTC	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.