Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005733

Physical Location & Seq

Genomic Coordinates Reverse (-)

5521285 .. 5523712

Gene Structure 2428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0071000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGACTCCAGAGGGGTTCAGTTCACAAAGGGACTGTTGCAAAGTGATGAACTATCTCAGTACATCTTGGAGACTAGTGTGTATCCTCGTGAACCAGCGCCTCTCAAGGAGCTAAGGGATGCCACTGCCAGTCATCCTCGGGCTGGGATGGGTACAGCACCAGATGGAGGTCAGCTACTAGCCATGCTGTTGAAGCTAGTAGATGCAAAGAAGACAATTGAAATTGGGGTTTTCACTGGATACTCTCTTCTCCTCACTGCGCTTACAATTCCCGAGGATGGCAGGATTGTAGCCATAGATATAGATCGTGAGACATATGAACAAGTAGGGTTGCCAATCATAAAGAAAGCTGGTGTTGAGCACAAAATTGATTTCATTGAATCCGAGGCTGTACCAGTTCTTGATAAGCTATTAGAAAATCCTGAAAATGAAGGCAGTTTTGACTTTGCCTACGTGGATGCCGACAAGGTTAACAATTGGAATTACCACGAGAGACTACTGAAGCTGTTGAAGGTGGGTGGCTTAGTTGTTTATGACAACACACTCTGCAGAGGATCAGTGGCATTGCCTGATGAGGTAGTTCCAGAGCTGAGAAAACAACGCAGACAGCTAGCCATTGAGCATAACAAGACACTTGCAGCCGATCCTCGTATCCAAATCTCGCATGCTTCTGTGGGTGATGGGATGATGATTTGTCGCCGAATCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0007568 GO:0008150 GO:0009507 GO:0009536 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0016740 GO:0016782 GO:0016783 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

236

Amino Acids

26.19

Weight (kDa)

5.33

Isoelectric Point (pI)

34.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	24 - 235	1.1e-73	O-methyltransferase
Methyltransf_24	PF13578	73 - 180	1.6e-09	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35770 AT4G35770 AT4G35770 AT4G35770 AT4G35770 AT4G35770 AT5G66040 AT5G66040
fragaria_vesca	FvH4_1g10930 FvH4_1g10930 FvH4_1g10930
malus_domestica	MD02G1122400.v1.1 MD15G1236600.v1.1
prunus_persica	Prupe.7G176200_v2.0.a1
pyrus_communis	pycom02g09530 pycom15g21030
rosa_chinensis	RchiOBHm_Chr2g0098191
rosa_laevigata	RLG00000016773
rosa_multiflora	Rmu_co8397565.1_g000001 Rmu_sc0002559.1_g000004 Rmu_sc0009178.1_g000006
rosa_roxburghii	Rroxscaffold_2G00144190
rosa_rugosa	Rorug02G0071000 Rorug02G0071100
rosa_samantha	Rh2BG121200 Rh2CG122800 Rh2DG122800
rosa_wichuraiana	Rw2G009250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	562, 638
AcuI	CTGAAG	1 cut(s)	521
AfaI	GTAC	3 cut(s)	62, 154, 393
AfiI	CCNNNNNNNGG	3 cut(s)	143, 167, 278
AgsI	TTSAA	4 cut(s)	193, 221, 380, 511
AhlI	ACTAGT	1 cut(s)	74
AluBI	AGCT	8 cut(s)	112, 175, 196, 350, 409, 505, 589, 610
AluI	AGCT	8 cut(s)	112, 175, 196, 350, 409, 505, 589, 610
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	3 cut(s)	65, 305, 487
AlwI	GGATC	2 cut(s)	562, 638
Ama87I	CYCGRG	2 cut(s)	138, 272
ApeKI	GCWGC	1 cut(s)	638
AspLEI	GCGC	2 cut(s)	100, 262
AsuHPI	GGTGA	1 cut(s)	689
AsuNHI	GCTAGC	1 cut(s)	610
AvaI	CYCGRG	2 cut(s)	138, 272
BauI	CACGAG	2 cut(s)	87, 488
BbsI	GAAGAC	1 cut(s)	218
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	650
BccI	CCATC	4 cut(s)	142, 158, 272, 674
BciVI	GTATCC	3 cut(s)	93, 233, 662
BcoDI	GTCTC	3 cut(s)	65, 305, 487
BcuI	ACTAGT	1 cut(s)	74
BfaI	CTAG	4 cut(s)	75, 179, 197, 611
BfmI	CTRYAG	1 cut(s)	547
BfoI	RGCGCY	1 cut(s)	101
BfuI	GTATCC	3 cut(s)	93, 233, 662
BisI	GCNGC	1 cut(s)	639
BlsI	GCNGC	1 cut(s)	640
BmeT110I	CYCGRG	2 cut(s)	138, 272
BmsI	GCATC	3 cut(s)	109, 193, 448
BmtI	GCTAGC	1 cut(s)	614
BpiI	GAAGAC	1 cut(s)	218
Bpu10I	CCTNAGC	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	89
BsaAI	YACGTR	1 cut(s)	454
BsaBI	GATNNNNATC	1 cut(s)	303
BsaJI	CCNNGG	3 cut(s)	137, 273, 384
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 167, 278
Bse1I	ACTGG	3 cut(s)	129, 241, 395
Bse3DI	GCAATG	1 cut(s)	563
Bse8I	GATNNNNATC	1 cut(s)	303
BseDI	CCNNGG	3 cut(s)	137, 273, 384
BseGI	GGATG	6 cut(s)	124, 133, 153, 283, 463, 690
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	3 cut(s)	143, 167, 278
BseMI	GCAATG	1 cut(s)	563
BseMII	CTCAG	2 cut(s)	71, 581
BseNI	ACTGG	3 cut(s)	129, 241, 395
BseRI	GAGGAG	1 cut(s)	242
BseXI	GCAGC	1 cut(s)	650
BseYI	CCCAGC	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	363
BsiHKCI	CYCGRG	2 cut(s)	138, 272
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	3 cut(s)	143, 167, 278
BsmAI	GTCTC	3 cut(s)	65, 305, 487
BsmFI	GGGAC	1 cut(s)	45
BsoBI	CYCGRG	2 cut(s)	138, 272
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	3 cut(s)	304, 554, 643
BspCNI	CTCAG	2 cut(s)	70, 582
BspMAI	CTGCAG	1 cut(s)	551
BspOI	GCTAGC	1 cut(s)	614
BspPI	GGATC	2 cut(s)	562, 638
BsrDI	GCAATG	1 cut(s)	563
BsrI	ACTGG	3 cut(s)	129, 241, 395
BssECI	CCNNGG	3 cut(s)	137, 273, 384
BssMI	GATC	3 cut(s)	304, 554, 643
BssSI	CACGAG	2 cut(s)	87, 488
Bst2BI	CACGAG	2 cut(s)	87, 488
Bst4CI	ACNGT	1 cut(s)	36
Bst6I	CTCTTC	1 cut(s)	252
BstBAI	YACGTR	1 cut(s)	454
BstC8I	GCNNGC	2 cut(s)	612, 666
BstDEI	CTNAG	4 cut(s)	57, 113, 523, 590
BstF5I	GGATG	6 cut(s)	124, 133, 153, 283, 463, 690
BstH2I	RGCGCY	1 cut(s)	101
BstHHI	GCGC	2 cut(s)	100, 262
BstKTI	GATC	3 cut(s)	307, 557, 646
BstMAI	GTCTC	3 cut(s)	65, 305, 487
BstMBI	GATC	3 cut(s)	304, 554, 643
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstNSI	RCATGY	1 cut(s)	668
BstSFI	CTRYAG	1 cut(s)	547
BstV1I	GCAGC	1 cut(s)	650
BstV2I	GAAGAC	1 cut(s)	218
BsuI	GTATCC	3 cut(s)	93, 233, 662
BtsCI	GGATG	6 cut(s)	124, 133, 153, 283, 463, 690
BtsI	GCAGTG	2 cut(s)	123, 255
BtsIMutI	CAGTG	4 cut(s)	123, 234, 255, 564
Cac8I	GCNNGC	2 cut(s)	612, 666
CfoI	GCGC	2 cut(s)	100, 262
Csp6I	GTAC	3 cut(s)	61, 153, 392
CviAII	CATG	2 cut(s)	184, 665
CviQI	GTAC	3 cut(s)	61, 153, 392
DdeI	CTNAG	4 cut(s)	57, 113, 523, 590
DpnI	GATC	3 cut(s)	306, 556, 645
DpnII	GATC	3 cut(s)	304, 554, 643
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco57I	CTGAAG	1 cut(s)	521
Eco88I	CYCGRG	2 cut(s)	138, 272
FaeI	CATG	2 cut(s)	187, 668
FaqI	GGGAC	1 cut(s)	45
FatI	CATG	2 cut(s)	183, 664
FauNDI	CATATG	1 cut(s)	316
Fnu4HI	GCNGC	1 cut(s)	639
FokI	GGATG	6 cut(s)	120, 131, 160, 290, 470, 697
Fsp4HI	GCNGC	1 cut(s)	639
FspBI	CTAG	4 cut(s)	75, 179, 197, 611
GlaI	GCGC	2 cut(s)	99, 261
GluI	GCNGC	1 cut(s)	639
GsaI	CCCAGC	1 cut(s)	147
HaeII	RGCGCY	1 cut(s)	101
HhaI	GCGC	2 cut(s)	100, 262
Hin1II	CATG	2 cut(s)	187, 668
Hin6I	GCGC	2 cut(s)	98, 260
HinP1I	GCGC	2 cut(s)	98, 260
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HinfI	GANTC	3 cut(s)	5, 380, 702
HpaI	GTTAAC	1 cut(s)	472
HphI	GGTGA	1 cut(s)	689
Hpy166II	GTNNAC	3 cut(s)	24, 92, 472
Hpy188I	TCNGA	1 cut(s)	385
Hpy188III	TCNNGA	7 cut(s)	9, 89, 272, 308, 401, 422, 584
Hpy8I	GTNNAC	3 cut(s)	24, 92, 472
HpyAV	CCTTC	2 cut(s)	425, 505
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	4 cut(s)	40, 206, 549, 638
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
HpyF3I	CTNAG	4 cut(s)	57, 113, 523, 590
HpySE526I	ACGT	1 cut(s)	453
Hsp92II	CATG	2 cut(s)	187, 668
HspAI	GCGC	2 cut(s)	98, 260
KspAI	GTTAAC	1 cut(s)	472
Kzo9I	GATC	3 cut(s)	304, 554, 643
LmnI	GCTCC	1 cut(s)	109
Lsp1109I	GCAGC	1 cut(s)	650
LweI	GCATC	3 cut(s)	109, 193, 448
MaeI	CTAG	4 cut(s)	75, 179, 197, 611
MaeII	ACGT	1 cut(s)	453
MalI	GATC	3 cut(s)	306, 556, 645
MboI	GATC	3 cut(s)	304, 554, 643
MboII	GAAGA	2 cut(s)	223, 239
MfeI	CAATTG	2 cut(s)	216, 475
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	6 cut(s)	216, 222, 267, 366, 475, 481
MseI	TTAA	1 cut(s)	471
MunI	CAATTG	2 cut(s)	216, 475
MwoI	GCNNNNNNNGC	1 cut(s)	193
NdeI	CATATG	1 cut(s)	316
NdeII	GATC	3 cut(s)	304, 554, 643
NheI	GCTAGC	1 cut(s)	610
NlaIII	CATG	2 cut(s)	187, 668
NspI	RCATGY	1 cut(s)	668
PaeI	GCATGC	1 cut(s)	668
PcsI	WCGNNNNNNNCGW	1 cut(s)	459
PfeI	GAWTC	2 cut(s)	380, 702
PkrI	GCNGC	1 cut(s)	640
Ppu21I	YACGTR	1 cut(s)	454
PspFI	CCCAGC	1 cut(s)	143
PstI	CTGCAG	1 cut(s)	551
RsaI	GTAC	3 cut(s)	62, 154, 393
RsaNI	GTAC	3 cut(s)	61, 153, 392
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	1 cut(s)	639
Sau3AI	GATC	3 cut(s)	304, 554, 643
SduI	GDGCHC	1 cut(s)	363
SfaNI	GCATC	3 cut(s)	109, 193, 448
SfcI	CTRYAG	1 cut(s)	547
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SpeI	ACTAGT	1 cut(s)	74
SphI	GCATGC	1 cut(s)	668
Sse9I	AATT	6 cut(s)	216, 222, 267, 366, 475, 481
SspMI	CTAG	4 cut(s)	75, 179, 197, 611
TaaI	ACNGT	1 cut(s)	36
TaiI	ACGT	1 cut(s)	456
TasI	AATT	6 cut(s)	216, 222, 267, 366, 475, 481
TatI	WGTACW	1 cut(s)	60
TfiI	GAWTC	2 cut(s)	380, 702
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	4 cut(s)	130, 241, 262, 564
TseI	GCWGC	1 cut(s)	638
TspDTI	ATGAA	4 cut(s)	63, 333, 364, 444
TspRI	CASTG	4 cut(s)	130, 241, 262, 564
XceI	RCATGY	1 cut(s)	668
XspI	CTAG	4 cut(s)	75, 179, 197, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.