Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005733

Physical Location & Seq

Genomic Coordinates Forward (+)

19456646 .. 19459912

Gene Structure 3267 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1236600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGATGGCGGTTTCGTCTATATCATCCTCCTCTTGCTTTACTAGCTCTGCTGCAATTCGACATCCTTCACTTCTTTCTCACAAAAATCTCATCCACAAATCTTCATTTTCTCTAAACGGGAAGAGACTTGGCACTGAACTCCAAAACAACTTCAACTTCTGTGTGAAAGTTTCTCAGAAGAGGAATTTGGAGGCCGTTGGAGTTCCAACTTCGGTGCCAGTTCGTGTGGCTCACGAGCTTCTTCAAGCTGGACACAAATATTTGGATGTCAGGACTCCTGGGGAGTTTAGTGCAGGCCATGCACCTGGGGCTGTTAACATCCCTTACTTGTACAAAGTTGGCTCAGGGATGTCAAAGAACCCAGAATTTCTAAAAGAAGTGTCATCACATTTCAGAAAACATGATGAGATTATAGTTGGATGCCAGCTTGGGAAAAGGTCGATGATGGCTGCAACTGATCTTGTAGCTGCTGGTTTCACTGGCATTACAGATATAGCTGGTGGGTATGCTGTTTGGACACAGACTGGACTTCCAACAGAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0007568 GO:0008150 GO:0009507 GO:0009536 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0016740 GO:0016782 GO:0016783 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

182

Amino Acids

19.45

Weight (kDa)

9.38

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhodanese	PF00581	78 - 174	1.7e-15	Rhodanese-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0005733)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35770 AT4G35770 AT4G35770 AT4G35770 AT4G35770 AT4G35770 AT5G66040 AT5G66040
fragaria_vesca	FvH4_1g10930 FvH4_1g10930 FvH4_1g10930
malus_domestica	MD02G1122400.v1.1 MD15G1236600.v1.1
prunus_persica	Prupe.7G176200_v2.0.a1
pyrus_communis	pycom02g09530 pycom15g21030
rosa_chinensis	RchiOBHm_Chr2g0098191
rosa_laevigata	RLG00000016773
rosa_multiflora	Rmu_co8397565.1_g000001 Rmu_sc0002559.1_g000004 Rmu_sc0009178.1_g000006
rosa_roxburghii	Rroxscaffold_2G00144190
rosa_rugosa	Rorug02G0071000 Rorug02G0071100
rosa_samantha	Rh2BG121200 Rh2CG122800 Rh2DG122800
rosa_wichuraiana	Rw2G009250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	214
AciI	CCGC	1 cut(s)	8
AcsI	RAATTY	2 cut(s)	184, 365
AfaI	GTAC	1 cut(s)	332
AgsI	TTSAA	2 cut(s)	154, 245
AjnI	CCWGG	2 cut(s)	277, 304
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AluBI	AGCT	6 cut(s)	45, 238, 248, 427, 467, 497
AluI	AGCT	6 cut(s)	45, 238, 248, 427, 467, 497
Alw26I	GTCTC	1 cut(s)	118
AoxI	GGCC	2 cut(s)	192, 295
ApeKI	GCWGC	3 cut(s)	50, 449, 467
ApoI	RAATTY	2 cut(s)	184, 365
BanI	GGYRCC	1 cut(s)	214
BauI	CACGAG	1 cut(s)	233
BbvI	GCAGC	3 cut(s)	37, 436, 454
BccI	CCATC	1 cut(s)	439
BceAI	ACGGC	1 cut(s)	179
BciT130I	CCWGG	2 cut(s)	279, 306
BcoDI	GTCTC	1 cut(s)	118
BfaI	CTAG	1 cut(s)	42
BisI	GCNGC	3 cut(s)	51, 450, 468
BlsI	GCNGC	3 cut(s)	52, 451, 469
Bme1390I	CCNGG	2 cut(s)	279, 306
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	2 cut(s)	279, 306
BmsI	GCATC	1 cut(s)	410
Bpu10I	CCTNAGC	1 cut(s)	343
BsaJI	CCNNGG	2 cut(s)	278, 305
Bse1I	ACTGG	3 cut(s)	218, 484, 529
BseBI	CCWGG	2 cut(s)	279, 306
BseDI	CCNNGG	2 cut(s)	278, 305
BseGI	GGATG	7 cut(s)	23, 61, 90, 271, 318, 354, 425
BseMII	CTCAG	2 cut(s)	188, 357
BseNI	ACTGG	3 cut(s)	218, 484, 529
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	3 cut(s)	37, 436, 454
BsgI	GTGCAG	1 cut(s)	312
BshFI	GGCC	2 cut(s)	194, 297
BshNI	GGYRCC	1 cut(s)	214
BsmAI	GTCTC	1 cut(s)	118
BsnI	GGCC	2 cut(s)	194, 297
Bsp1407I	TGTACA	1 cut(s)	330
Bsp143I	GATC	1 cut(s)	457
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	2 cut(s)	194, 297
BspCNI	CTCAG	2 cut(s)	187, 356
BspLI	GGNNCC	1 cut(s)	216
BspT107I	GGYRCC	1 cut(s)	214
BsrGI	TGTACA	1 cut(s)	330
BsrI	ACTGG	3 cut(s)	218, 484, 529
BssECI	CCNNGG	2 cut(s)	278, 305
BssMI	GATC	1 cut(s)	457
BssSI	CACGAG	1 cut(s)	233
Bst2BI	CACGAG	1 cut(s)	233
Bst2UI	CCWGG	2 cut(s)	279, 306
Bst6I	CTCTTC	2 cut(s)	116, 173
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstAUI	TGTACA	1 cut(s)	330
BstC8I	GCNNGC	2 cut(s)	295, 425
BstDEI	CTNAG	2 cut(s)	174, 343
BstF5I	GGATG	7 cut(s)	23, 61, 90, 271, 318, 354, 425
BstKTI	GATC	1 cut(s)	460
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	457
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 299, 308
BstNI	CCWGG	2 cut(s)	279, 306
BstSCI	CCNGG	2 cut(s)	277, 304
BstV1I	GCAGC	3 cut(s)	37, 436, 454
BstXI	CCANNNNNNTGG	1 cut(s)	305
BsuRI	GGCC	2 cut(s)	194, 297
BtsCI	GGATG	7 cut(s)	23, 61, 90, 271, 318, 354, 425
BtsIMutI	CAGTG	2 cut(s)	132, 477
Cac8I	GCNNGC	2 cut(s)	295, 425
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	2 cut(s)	299, 401
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	2 cut(s)	174, 343
DpnI	GATC	1 cut(s)	459
DpnII	GATC	1 cut(s)	457
Eam1104I	CTCTTC	2 cut(s)	116, 173
EarI	CTCTTC	2 cut(s)	116, 173
EcoRII	CCWGG	2 cut(s)	277, 304
FaeI	CATG	2 cut(s)	302, 404
FaiI	YATR	7 cut(s)	20, 300, 402, 413, 494, 507, 544
FatI	CATG	2 cut(s)	298, 400
Fnu4HI	GCNGC	3 cut(s)	51, 450, 468
FokI	GGATG	7 cut(s)	10, 48, 77, 278, 305, 361, 432
Fsp4HI	GCNGC	3 cut(s)	51, 450, 468
FspBI	CTAG	1 cut(s)	42
GluI	GCNGC	3 cut(s)	51, 450, 468
HaeIII	GGCC	2 cut(s)	194, 297
Hin1II	CATG	2 cut(s)	302, 404
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	1 cut(s)	274
HpaI	GTTAAC	1 cut(s)	316
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	2 cut(s)	177, 395
Hpy188III	TCNNGA	2 cut(s)	233, 271
Hpy8I	GTNNAC	1 cut(s)	316
HpyAV	CCTTC	1 cut(s)	75
HpyCH4V	TGCA	4 cut(s)	53, 293, 302, 452
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 299, 308
HpyF3I	CTNAG	2 cut(s)	174, 343
Hsp92II	CATG	2 cut(s)	302, 404
KspAI	GTTAAC	1 cut(s)	316
Kzo9I	GATC	1 cut(s)	457
Lsp1109I	GCAGC	3 cut(s)	37, 436, 454
LweI	GCATC	1 cut(s)	410
MaeI	CTAG	1 cut(s)	42
MalI	GATC	1 cut(s)	459
MboI	GATC	1 cut(s)	457
MboII	GAAGA	4 cut(s)	93, 133, 190, 233
MluCI	AATT	3 cut(s)	54, 184, 365
MlyI	GAGTC	1 cut(s)	268
MmeI	TCCRAC	3 cut(s)	178, 230, 397
MnlI	CCTC	4 cut(s)	37, 40, 174, 184
MseI	TTAA	1 cut(s)	315
MspR9I	CCNGG	2 cut(s)	279, 306
MvaI	CCWGG	2 cut(s)	279, 306
MwoI	GCNNNNNNNGC	3 cut(s)	42, 299, 308
NdeII	GATC	1 cut(s)	457
NlaIII	CATG	2 cut(s)	302, 404
NlaIV	GGNNCC	1 cut(s)	216
PkrI	GCNGC	3 cut(s)	52, 451, 469
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
Psp6I	CCWGG	2 cut(s)	277, 304
PspGI	CCWGG	2 cut(s)	277, 304
PspN4I	GGNNCC	1 cut(s)	216
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	3 cut(s)	51, 450, 468
Sau3AI	GATC	1 cut(s)	457
SchI	GAGTC	1 cut(s)	268
ScrFI	CCNGG	2 cut(s)	279, 306
SetI	ASST	8 cut(s)	47, 240, 250, 307, 429, 440, 469, 499
SfaNI	GCATC	1 cut(s)	410
Sse9I	AATT	3 cut(s)	54, 184, 365
SsiI	CCGC	1 cut(s)	8
SspI	AATATT	1 cut(s)	260
SspMI	CTAG	1 cut(s)	42
StyD4I	CCNGG	2 cut(s)	277, 304
TaqI	TCGA	2 cut(s)	58, 440
TasI	AATT	3 cut(s)	54, 184, 365
TatI	WGTACW	1 cut(s)	330
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	2 cut(s)	139, 484
TseI	GCWGC	3 cut(s)	50, 449, 467
TspDTI	ATGAA	1 cut(s)	93
TspRI	CASTG	2 cut(s)	139, 484
XapI	RAATTY	2 cut(s)	184, 365
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.