Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005082

Physical Location & Seq

Genomic Coordinates Reverse (-)

17011788 .. 17015493

Gene Structure 3706 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G35920.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGTCACATTCATGGGATGGTCTTGGGGAGATTGCGTCAGTGGCTCAGCTGACTGGTTTAGATGCGGTCAAGTTGATTGGTCTCATAGTCAAAGCTGCGAATACTGCTTGGATGCATAAGAAGAATTGTCGTCAATTCGCTCAACATCTCAAACTCATTGGGAATTTGCTTGAACAGCTGAAGATCTCTGAGATGAAGAAGTATCCTGAGACTCGAGAGCCTCTCGAAGGGCTTGAGGATGCTTTGAGAAGGTCTTACCTTCTGGTCAATAGCTGTAGAGACCGGAGCTATCTTTACTTGTTGGCTATGGGTTGGAACATTGTTTACCAGTTCAGGAAACATCAGGATGAGATTGATCGTTTTCTTAAGATCATACCTCTCATCACTTTGGTCGATAACGCTCGCATTCGGGAGAGGTTTGAGTATATTGACCGTGATCAGCGTGAGTACACTCTGGATGAAGAGGATAGACATGTGCAAGATGTTATTTTGAAACAAGAATCCACCAGAGAAGCAGCATCAGTACTGAAGAAGACTCTCTCTTGCTCATACCCTAACTTGCGTTTCTGTGAAGCTCTCAAAACAGAAAACGAGAAACTGCAGATCGAACTTCAGCGGTCGCAGGAGCATTATGATGTGGCTCAGTGTGAAGTCATTCAGCGTTTAATTGGTGTTACACAAGCTGCTGCTGCTGTTGAACCTGACTCTGAGAAGGAGCTGACAAAGAAAGCTTCCAAAAAATCTGAACGTAGCTCAAGCATGAAGACGGAATATTCGTATGACGAAGATTCTCCCAAGAAAAGCAGTACTCGTGCAGCTTCGAGATCCACTTCTAATGTTTCATCTGGGCATGATCTGCTTTCACGAAGAGCATCACAGGCACAACACCATGAAGAATGGCATACCGACTTACTAGCTTGTTGCTCGGAACCTTCTCTTTGCTTCAAGACATTCTTTTTCCCGTGTGGTACTTTGGCAAAGATTGCCACTGCAGCATCCAACAGGCACATCTCTTCAGCTGAAGCATGTAATGAGCTAATGGCGTATTCTTTGATACTTTCTTGTTGCTGCTATACTTGTTGCGTGAGGAGGAAACTCCGGAAGACACTGAACATCACGGGAGGATTCATTGACGATTTTCTATCTCATGTAATGTGTTGTTGCTGTGCCCTTGTACAAGAACTGAGAGAAGTTGAGATTCGTGGGGCATATGGTACGGAGAAGACGAAAATAAGCCCGCCTTCGTCGCAGTTCATGGAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0007275 GO:0007610 GO:0007638 GO:0008150 GO:0008324 GO:0009605 GO:0009612 GO:0009628 GO:0009791 GO:0009987 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022622 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0033500 GO:0033554 GO:0034220 GO:0042592 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048364 GO:0048528 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071214 GO:0071470 GO:0071944 GO:0072511 GO:0090696 GO:0098655 GO:0098660 GO:0098662 GO:0099402 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

421

Amino Acids

48.04

Weight (kDa)

7.48

Isoelectric Point (pI)

54.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCAfunc	PF19584	25 - 167	7.9e-83	MCAfunc domain
PLAC8	PF04749	300 - 397	3.4e-19	PLAC8 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35920 AT4G35920 AT4G35920 AT4G35920 AT4G35920
fragaria_vesca	FvH4_1g11310 FvH4_1g11310 FvH4_1g11310 FvH4_1g11310 FvH4_1g11310
malus_domestica	MD02G1127400.v1.1 MD15G1241400.v1.1
prunus_persica	Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1
pyrus_communis	pycom02g09950 pycom15g21290
rosa_chinensis	RchiOBHm_Chr2g0098791
rosa_laevigata	RLG00000016828
rosa_multiflora	Rmu_sc0002776.1_g000035
rosa_roxburghii	Rroxscaffold_2G00143700
rosa_rugosa	Rorug02G0074800
rosa_samantha	Rh2AG122600 Rh2BG126300 Rh2CG127200 Rh2DG128200
rosa_wichuraiana	Rw0G004270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	1098
AciI	CCGC	3 cut(s)	65, 616, 1238
AclWI	GGATC	1 cut(s)	819
AcsI	RAATTY	1 cut(s)	163
AcuI	CTGAAG	5 cut(s)	200, 548, 596, 999, 1041
AfaI	GTAC	6 cut(s)	449, 525, 808, 970, 1176, 1216
AfiI	CCNNNNNNNGG	1 cut(s)	227
AflII	CTTAAG	1 cut(s)	365
AflIII	ACRYGT	1 cut(s)	472
AgsI	TTSAA	4 cut(s)	173, 493, 698, 946
Alw26I	GTCTC	3 cut(s)	86, 203, 273
AlwI	GGATC	1 cut(s)	819
Ama87I	CYCGRG	1 cut(s)	213
Aor13HI	TCCGGA	1 cut(s)	1098
ApeKI	GCWGC	8 cut(s)	95, 515, 683, 686, 689, 815, 992, 1068
ApoI	RAATTY	1 cut(s)	163
ArsI	GACNNNNNNTTYG	2 cut(s)	757, 789
Asp700I	GAANNNNTTC	1 cut(s)	654
AvaI	CYCGRG	1 cut(s)	213
BaeGI	GKGCMC	1 cut(s)	1171
BauI	CACGAG	1 cut(s)	810
BbsI	GAAGAC	4 cut(s)	539, 770, 1109, 1229
BbvI	GCAGC	8 cut(s)	82, 527, 670, 673, 676, 827, 1004, 1055
BccI	CCATC	1 cut(s)	11
BciVI	GTATCC	1 cut(s)	213
BclI	TGATCA	1 cut(s)	436
BcoDI	GTCTC	3 cut(s)	86, 203, 273
BfaI	CTAG	1 cut(s)	914
BfmI	CTRYAG	3 cut(s)	274, 599, 990
BfrI	CTTAAG	1 cut(s)	365
BfuI	GTATCC	1 cut(s)	213
BglII	AGATCT	1 cut(s)	183
BisI	GCNGC	8 cut(s)	96, 516, 684, 687, 690, 816, 993, 1069
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	8 cut(s)	97, 517, 685, 688, 691, 817, 994, 1070
BmcAI	AGTACT	2 cut(s)	525, 808
BmeT110I	CYCGRG	1 cut(s)	213
BmiI	GGNNCC	1 cut(s)	930
BmsI	GCATC	6 cut(s)	52, 102, 229, 527, 881, 1004
BpiI	GAAGAC	4 cut(s)	539, 770, 1109, 1229
BplI	GAGNNNNNCTC	2 cut(s)	207, 239
Bpu1102I	GCTNAGC	1 cut(s)	45
BpuEI	CTTGAG	2 cut(s)	254, 739
BsaI	GGTCTC	2 cut(s)	86, 273
BsaWI	WCCGGW	2 cut(s)	282, 1098
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse1I	ACTGG	2 cut(s)	58, 328
BseAI	TCCGGA	1 cut(s)	1098
BseGI	GGATG	6 cut(s)	22, 117, 244, 352, 463, 995
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMII	CTCAG	6 cut(s)	59, 180, 198, 656, 699, 1175
BseNI	ACTGG	2 cut(s)	58, 328
BseRI	GAGGAG	1 cut(s)	1102
BseSI	GKGCMC	1 cut(s)	1171
BseXI	GCAGC	8 cut(s)	82, 527, 670, 673, 676, 827, 1004, 1055
BsgI	GTGCAG	1 cut(s)	834
Bsh1285I	CGRYCG	1 cut(s)	620
BsiEI	CGRYCG	1 cut(s)	620
BsiHKCI	CYCGRG	1 cut(s)	213
BsiSI	CCGG	2 cut(s)	283, 1099
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmAI	GTCTC	3 cut(s)	86, 203, 273
BsmI	GAATGC	1 cut(s)	405
Bso31I	GGTCTC	2 cut(s)	86, 273
BsoBI	CYCGRG	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	1171
Bsp13I	TCCGGA	1 cut(s)	1098
Bsp1407I	TGTACA	1 cut(s)	1174
Bsp143I	GATC	7 cut(s)	183, 355, 369, 436, 603, 824, 853
Bsp1720I	GCTNAGC	1 cut(s)	45
BspACI	CCGC	3 cut(s)	65, 616, 1238
BspCNI	CTCAG	6 cut(s)	58, 181, 199, 655, 700, 1176
BspEI	TCCGGA	1 cut(s)	1098
BspLI	GGNNCC	1 cut(s)	930
BspMAI	CTGCAG	2 cut(s)	603, 994
BspPI	GGATC	1 cut(s)	819
BspQI	GCTCTTC	1 cut(s)	862
BspTI	CTTAAG	1 cut(s)	365
BspTNI	GGTCTC	2 cut(s)	86, 273
BsrGI	TGTACA	1 cut(s)	1174
BsrI	ACTGG	2 cut(s)	58, 328
BssMI	GATC	7 cut(s)	183, 355, 369, 436, 603, 824, 853
BssSI	CACGAG	1 cut(s)	810
Bst2BI	CACGAG	1 cut(s)	810
Bst4CI	ACNGT	1 cut(s)	434
Bst6I	CTCTTC	3 cut(s)	456, 862, 1018
BstAFI	CTTAAG	1 cut(s)	365
BstAPI	GCANNNNNTGC	2 cut(s)	856, 983
BstAUI	TGTACA	1 cut(s)	1174
BstC8I	GCNNGC	2 cut(s)	403, 1238
BstDEI	CTNAG	6 cut(s)	45, 189, 207, 642, 708, 1184
BstENI	CCTNNNNNAGG	1 cut(s)	225
BstF5I	GGATG	6 cut(s)	22, 117, 244, 352, 463, 995
BstKTI	GATC	7 cut(s)	186, 358, 372, 439, 606, 827, 856
BstMAI	GTCTC	3 cut(s)	86, 203, 273
BstMBI	GATC	7 cut(s)	183, 355, 369, 436, 603, 824, 853
BstMCI	CGRYCG	1 cut(s)	620
BstMWI	GCNNNNNNNGC	9 cut(s)	41, 104, 175, 689, 856, 878, 983, 992, 1246
BstNSI	RCATGY	2 cut(s)	476, 1029
BstSFI	CTRYAG	3 cut(s)	274, 599, 990
BstSLI	GKGCMC	1 cut(s)	1171
BstV1I	GCAGC	8 cut(s)	82, 527, 670, 673, 676, 827, 1004, 1055
BstV2I	GAAGAC	4 cut(s)	539, 770, 1109, 1229
BstX2I	RGATCY	2 cut(s)	183, 824
BstYI	RGATCY	2 cut(s)	183, 824
BsuI	GTATCC	1 cut(s)	213
BtsCI	GGATG	6 cut(s)	22, 117, 244, 352, 463, 995
BtsI	GCAGTG	1 cut(s)	987
BtsIMutI	CAGTG	4 cut(s)	45, 650, 987, 1106
Cac8I	GCNNGC	2 cut(s)	403, 1238
CseI	GACGC	1 cut(s)	24
Csp6I	GTAC	6 cut(s)	448, 524, 807, 969, 1175, 1215
CviAII	CATG	8 cut(s)	12, 473, 760, 851, 890, 1026, 1148, 1255
CviQI	GTAC	6 cut(s)	448, 524, 807, 969, 1175, 1215
DdeI	CTNAG	6 cut(s)	45, 189, 207, 642, 708, 1184
DpnI	GATC	7 cut(s)	185, 357, 371, 438, 605, 826, 855
DpnII	GATC	7 cut(s)	183, 355, 369, 436, 603, 824, 853
Eam1104I	CTCTTC	3 cut(s)	456, 862, 1018
EarI	CTCTTC	3 cut(s)	456, 862, 1018
Eco31I	GGTCTC	2 cut(s)	86, 273
Eco57I	CTGAAG	5 cut(s)	200, 548, 596, 999, 1041
Eco88I	CYCGRG	1 cut(s)	213
EcoNI	CCTNNNNNAGG	1 cut(s)	225
EcoT22I	ATGCAT	1 cut(s)	117
FaeI	CATG	8 cut(s)	15, 476, 763, 854, 893, 1029, 1151, 1258
FalI	AAGNNNNNCTT	4 cut(s)	938, 970, 1225, 1257
FatI	CATG	8 cut(s)	11, 472, 759, 850, 889, 1025, 1147, 1254
FauI	CCCGC	1 cut(s)	1245
FauNDI	CATATG	1 cut(s)	1210
FbaI	TGATCA	1 cut(s)	436
Fnu4HI	GCNGC	8 cut(s)	96, 516, 684, 687, 690, 816, 993, 1069
FokI	GGATG	6 cut(s)	29, 124, 251, 359, 470, 982
Fsp4HI	GCNGC	8 cut(s)	96, 516, 684, 687, 690, 816, 993, 1069
FspBI	CTAG	1 cut(s)	914
GluI	GCNGC	8 cut(s)	96, 516, 684, 687, 690, 816, 993, 1069
HapII	CCGG	2 cut(s)	283, 1099
HgaI	GACGC	1 cut(s)	24
Hin1II	CATG	8 cut(s)	15, 476, 763, 854, 893, 1029, 1151, 1258
HindIII	AAGCTT	1 cut(s)	729
HinfI	GANTC	7 cut(s)	211, 500, 535, 704, 788, 1125, 1198
HpaII	CCGG	2 cut(s)	283, 1099
Hpy166II	GTNNAC	2 cut(s)	325, 450
Hpy188I	TCNGA	4 cut(s)	190, 709, 745, 928
Hpy8I	GTNNAC	2 cut(s)	325, 450
Hpy99I	CGWCG	1 cut(s)	1249
HpyAV	CCTTC	6 cut(s)	221, 243, 269, 706, 942, 1251
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4IV	ACGT	1 cut(s)	748
HpyCH4V	TGCA	5 cut(s)	115, 478, 601, 815, 992
HpyF10VI	GCNNNNNNNGC	9 cut(s)	41, 104, 175, 689, 856, 878, 983, 992, 1246
HpyF3I	CTNAG	6 cut(s)	45, 189, 207, 642, 708, 1184
HpySE526I	ACGT	1 cut(s)	748
Hsp92II	CATG	8 cut(s)	15, 476, 763, 854, 893, 1029, 1151, 1258
Kpn2I	TCCGGA	1 cut(s)	1098
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	7 cut(s)	183, 355, 369, 436, 603, 824, 853
LguI	GCTCTTC	1 cut(s)	862
LmnI	GCTCC	3 cut(s)	285, 625, 715
Lsp1109I	GCAGC	8 cut(s)	82, 527, 670, 673, 676, 827, 1004, 1055
LweI	GCATC	6 cut(s)	52, 102, 229, 527, 881, 1004
MaeI	CTAG	1 cut(s)	914
MaeII	ACGT	1 cut(s)	748
MaeIII	GTNAC	2 cut(s)	3, 673
MalI	GATC	7 cut(s)	185, 357, 371, 438, 605, 826, 855
MboI	GATC	7 cut(s)	183, 355, 369, 436, 603, 824, 853
MflI	RGATCY	2 cut(s)	183, 824
MhlI	GDGCHC	1 cut(s)	1171
MluCI	AATT	4 cut(s)	124, 134, 163, 666
MlyI	GAGTC	3 cut(s)	205, 529, 698
MmeI	TCCRAC	2 cut(s)	293, 1023
MnlI	CCTC	8 cut(s)	229, 231, 387, 408, 457, 1080, 1083, 1115
Mph1103I	ATGCAT	1 cut(s)	117
MroI	TCCGGA	1 cut(s)	1098
MroXI	GAANNNNTTC	1 cut(s)	654
MseI	TTAA	2 cut(s)	366, 665
MslI	CAYNNNNRTG	3 cut(s)	10, 345, 633
MspA1I	CMGCKG	4 cut(s)	49, 178, 616, 1019
MspCI	CTTAAG	1 cut(s)	365
MspI	CCGG	2 cut(s)	283, 1099
Mva1269I	GAATGC	1 cut(s)	405
MwoI	GCNNNNNNNGC	9 cut(s)	41, 104, 175, 689, 856, 878, 983, 992, 1246
NdeI	CATATG	1 cut(s)	1210
NdeII	GATC	7 cut(s)	183, 355, 369, 436, 603, 824, 853
NlaIII	CATG	8 cut(s)	15, 476, 763, 854, 893, 1029, 1151, 1258
NlaIV	GGNNCC	1 cut(s)	930
NmuCI	GTSAC	1 cut(s)	3
NsiI	ATGCAT	1 cut(s)	117
NspI	RCATGY	2 cut(s)	476, 1029
PaeR7I	CTCGAG	1 cut(s)	213
PciI	ACATGT	1 cut(s)	472
PciSI	GCTCTTC	1 cut(s)	862
PcsI	WCGNNNNNNNCGW	2 cut(s)	773, 1223
PctI	GAATGC	1 cut(s)	405
PdmI	GAANNNNTTC	1 cut(s)	654
PfeI	GAWTC	4 cut(s)	500, 788, 1125, 1198
PkrI	GCNGC	8 cut(s)	97, 517, 685, 688, 691, 817, 994, 1070
PleI	GAGTC	3 cut(s)	205, 529, 698
PpsI	GAGTC	3 cut(s)	205, 529, 698
PscI	ACATGT	1 cut(s)	472
PspN4I	GGNNCC	1 cut(s)	930
PsrI	GAACNNNNNNTAC	2 cut(s)	308, 340
PstI	CTGCAG	2 cut(s)	603, 994
PsuI	RGATCY	2 cut(s)	183, 824
PvuII	CAGCTG	3 cut(s)	49, 178, 1019
RsaI	GTAC	6 cut(s)	449, 525, 808, 970, 1176, 1216
RsaNI	GTAC	6 cut(s)	448, 524, 807, 969, 1175, 1215
RseI	CAYNNNNRTG	3 cut(s)	10, 345, 633
SapI	GCTCTTC	1 cut(s)	862
SaqAI	TTAA	2 cut(s)	366, 665
SatI	GCNGC	8 cut(s)	96, 516, 684, 687, 690, 816, 993, 1069
Sau3AI	GATC	7 cut(s)	183, 355, 369, 436, 603, 824, 853
ScaI	AGTACT	2 cut(s)	525, 808
SchI	GAGTC	3 cut(s)	205, 529, 698
SduI	GDGCHC	1 cut(s)	1171
SfaNI	GCATC	6 cut(s)	52, 102, 229, 527, 881, 1004
SfcI	CTRYAG	3 cut(s)	274, 599, 990
Sfr274I	CTCGAG	1 cut(s)	213
SlaI	CTCGAG	1 cut(s)	213
SmiMI	CAYNNNNRTG	3 cut(s)	10, 345, 633
SmlI	CTYRAG	4 cut(s)	213, 233, 365, 754
SmoI	CTYRAG	4 cut(s)	213, 233, 365, 754
Sse9I	AATT	4 cut(s)	124, 134, 163, 666
SsiI	CCGC	3 cut(s)	65, 616, 1238
SspI	AATATT	1 cut(s)	773
SspMI	CTAG	1 cut(s)	914
TaaI	ACNGT	1 cut(s)	434
TaiI	ACGT	1 cut(s)	751
TaqI	TCGA	5 cut(s)	214, 225, 393, 606, 821
TasI	AATT	4 cut(s)	124, 134, 163, 666
TatI	WGTACW	4 cut(s)	447, 523, 806, 1174
TfiI	GAWTC	4 cut(s)	500, 788, 1125, 1198
Tru1I	TTAA	2 cut(s)	366, 665
Tru9I	TTAA	2 cut(s)	366, 665
TscAI	CASTG	4 cut(s)	45, 650, 994, 1113
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	8 cut(s)	95, 515, 683, 686, 689, 815, 992, 1068
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	7 cut(s)	209, 474, 776, 831, 906, 1117, 1243
TspGWI	ACGGA	2 cut(s)	782, 1232
TspRI	CASTG	4 cut(s)	45, 650, 994, 1113
Vha464I	CTTAAG	1 cut(s)	365
XagI	CCTNNNNNAGG	1 cut(s)	225
XapI	RAATTY	1 cut(s)	163
XceI	RCATGY	2 cut(s)	476, 1029
XhoI	CTCGAG	1 cut(s)	213
XmnI	GAANNNNTTC	1 cut(s)	654
XspI	CTAG	1 cut(s)	914
ZrmI	AGTACT	2 cut(s)	525, 808
Zsp2I	ATGCAT	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.