FvH4_1g11310

Protein MID1-COMPLEMENTING ACTIVITY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0005082
Physical Location & Seq
Reverse (-)
6158619 .. 6163893
5275 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g11310.t5

Sequence Viewer

Length: 1248 bp
ATGGCGTCATGGGACCATTTCGGAGACATTGCCAATGTGGCTCAGCTGACGGGGCTGGACGCCGTGAAGCTGATCGGAATGATTGTCAAGGCTGCGGCGACGGCGAGAATGCACAAGAAGAACTGCAGGCAATTTGCACAGCATTTGAAGCTGATCGGGAATCTGTTGGAGCAACTCAAGATCTCGGAGCTCAAGAGGTATCCGGAGACTCGAGAGCCGTTGGAGCAGCTGGAGGAGGCTCTGAGGAGGTCATACATTTTGGTCAACAGCTGCCAGGACCGGAGCTATTTGTATCTGCTTGCAATGGGATGGAATATTGTGTATCAGTTCAGGAAGGCGCAGAATGAGATTGATAGATACTTGAAGCTTGTGCCGTTGATTACTCTAGTCGACAATGCTCGAGTCAGGGAGAGACTGGAAGACATTGAACTGGATCAACGTGAGTACACATTGGATGAAGAGGACAGGAAAGTGCAGGATGTGATCCTTAAACCAGATCCCTCTAAACACGATACTGTAGTGTTGAAGAAAACGCTTTCGTGCTCCTATCCGAACTTGCCTTTTTGCAAGGCGCTTGAAAAGGAAAATGAAAAACTTCAACTTGAACTACAGCGGTCGCAAGCTACTTATGATGTGAGTCAATGTGAAGTGATTCAGCGTTTGATTGAAGTGACAGAAGCTGTAGCTGCAAACTCTTCGCCTGAAAAAAATCAGAAGAAAATAGAGCGGGATCATTCAGACGTCAATAGTGAGAGTGTACATTCATCTGATGAAAAAAGCTACAAGAAGAGTGAATCTCACATCTCTAGAAACACATCTTCAGTTTCTTCTGGACATGATCTCTTGTCAAACAGAGGTTCACATCACCATGGAGAATGGAATACTGATCTTCTAGGTTGTTGCTCAGAACCATCTTTGTGTTTCAAGACATTCTTCTATCCTTGTGGGACATTTTCAAAAATTGCTACTGTGGCAACTAACAGGCACATGTCTTCAGGTGAAGCATGTAATGAATTGATGGCGTATTCATTAATATTGTCATGCTGTTGCTACACATGCTGCATTAGAAGGAAACTTCGCAAGACATTGAATATCTCGGGAGGCTTCATTGATGATTTCCTTTCACATTTTATGTGTTGCTGCTGTGCCCTTGTCCAAGAGTGGCGAGAAGTCGAAATACGGGGGATGACATATGGTCCTGAAAAGACAAAAATTAGCCCTCCACCCTCACAATACATGGAAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLAC8

Protein Analysis

416

Amino Acids

47.47

Weight (kDa)

6.68

Isoelectric Point (pI)

49.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MCAfunc PF19584 24 - 165 1.5e-85 MCAfunc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 744
AccBSI CCGCTC 1 cut(s) 727
AccI GTMKAC 1 cut(s) 390
AccIII TCCGGA 1 cut(s) 202
AciI CCGC 3 cut(s) 95, 613, 727
AclWI GGATC 4 cut(s) 441, 478, 491, 738
AcuI CTGAAG 2 cut(s) 804, 978
AcyI GRCGYC 3 cut(s) 5, 60, 741
AfaI GTAC 2 cut(s) 446, 759
AflIII ACRYGT 1 cut(s) 987
AhdI GACNNNNNGTC 1 cut(s) 1194
AjnI CCWGG 1 cut(s) 273
Alw21I GWGCWC 2 cut(s) 192, 545
Alw26I GTCTC 3 cut(s) 18, 200, 406
AlwI GGATC 4 cut(s) 441, 478, 491, 738
AlwNI CAGNNNCTG 1 cut(s) 680
Ama87I CYCGRG 3 cut(s) 210, 399, 1096
Aor13HI TCCGGA 1 cut(s) 202
ApeKI GCWGC 6 cut(s) 92, 226, 270, 686, 1059, 1140
AseI ATTAAT 1 cut(s) 1031
Asp700I GAANNNNTTC 2 cut(s) 594, 651
AspLEI GCGC 2 cut(s) 340, 574
AspS9I GGNCC 3 cut(s) 13, 277, 1196
AsuHPI GGTGA 2 cut(s) 857, 1010
AvaI CYCGRG 3 cut(s) 210, 399, 1096
AvaII GGWCC 3 cut(s) 13, 277, 1196
BaeGI GKGCMC 1 cut(s) 1150
BaeI ACNNNNGTAYC 2 cut(s) 504, 537
BanII GRGCYC 1 cut(s) 192
BarI GAAGNNNNNNTAC 2 cut(s) 1161, 1193
BbsI GAAGAC 2 cut(s) 426, 984
Bbv12I GWGCWC 2 cut(s) 192, 545
BbvI GCAGC 6 cut(s) 79, 238, 257, 673, 1046, 1127
BccI CCATC 3 cut(s) 303, 919, 1012
BceAI ACGGC 4 cut(s) 47, 117, 202, 358
BcgI CGANNNNNNTGC 2 cut(s) 678, 712
BciT130I CCWGG 1 cut(s) 275
BciVI GTATCC 1 cut(s) 210
BcoDI GTCTC 3 cut(s) 18, 200, 406
BfaI CTAG 3 cut(s) 386, 807, 893
BfmI CTRYAG 4 cut(s) 124, 516, 608, 681
BfoI RGCGCY 1 cut(s) 575
BfuI GTATCC 1 cut(s) 210
BglI GCCNNNNNGGC 1 cut(s) 38
BglII AGATCT 1 cut(s) 180
BisI GCNGC 7 cut(s) 93, 96, 227, 271, 687, 1060, 1141
BlpI GCTNAGC 1 cut(s) 42
BlsI GCNGC 7 cut(s) 94, 97, 228, 272, 688, 1061, 1142
Bme1390I CCNGG 1 cut(s) 275
Bme18I GGWCC 3 cut(s) 13, 277, 1196
BmeRI GACNNNNNGTC 1 cut(s) 1194
BmeT110I CYCGRG 3 cut(s) 210, 399, 1096
BmgT120I GGNCC 3 cut(s) 13, 277, 1196
BmiI GGNNCC 1 cut(s) 14
BmrFI CCNGG 1 cut(s) 275
BpiI GAAGAC 2 cut(s) 426, 984
BplI GAGNNNNNCTC 2 cut(s) 781, 813
BpmI CTGGAG 1 cut(s) 251
Bpu1102I GCTNAGC 1 cut(s) 42
BpuEI CTTGAG 2 cut(s) 161, 176
BsaHI GRCGYC 3 cut(s) 5, 60, 741
BsaJI CCNNGG 1 cut(s) 868
BsaWI WCCGGW 2 cut(s) 202, 279
Bse1I ACTGG 2 cut(s) 420, 435
Bse3DI GCAATG 2 cut(s) 27, 309
BseAI TCCGGA 1 cut(s) 202
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 868
BseGI GGATG 4 cut(s) 314, 460, 484, 1191
BseMI GCAATG 2 cut(s) 27, 309
BseMII CTCAG 3 cut(s) 56, 233, 918
BseNI ACTGG 2 cut(s) 420, 435
BseRI GAGGAG 2 cut(s) 248, 259
BseSI GKGCMC 1 cut(s) 1150
BseXI GCAGC 6 cut(s) 79, 238, 257, 673, 1046, 1127
BsgI GTGCAG 1 cut(s) 494
Bsh1285I CGRYCG 1 cut(s) 617
BsiEI CGRYCG 1 cut(s) 617
BsiHKAI GWGCWC 2 cut(s) 192, 545
BsiHKCI CYCGRG 3 cut(s) 210, 399, 1096
BsiSI CCGG 2 cut(s) 203, 280
BslFI GGGAC 2 cut(s) 26, 961
BsmAI GTCTC 3 cut(s) 18, 200, 406
BsmFI GGGAC 2 cut(s) 26, 961
BsmI GAATGC 1 cut(s) 114
BsoBI CYCGRG 3 cut(s) 210, 399, 1096
Bsp1286I GDGCHC 3 cut(s) 192, 545, 1150
Bsp13I TCCGGA 1 cut(s) 202
Bsp1407I TGTACA 1 cut(s) 757
Bsp143I GATC 9 cut(s) 72, 153, 180, 433, 483, 496, 730, 838, 886
Bsp1720I GCTNAGC 1 cut(s) 42
Bsp19I CCATGG 1 cut(s) 868
BspACI CCGC 3 cut(s) 95, 613, 727
BspCNI CTCAG 3 cut(s) 55, 234, 917
BspEI TCCGGA 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 14
BspMAI CTGCAG 1 cut(s) 128
BspPI GGATC 4 cut(s) 441, 478, 491, 738
BsrBI CCGCTC 1 cut(s) 727
BsrDI GCAATG 2 cut(s) 27, 309
BsrGI TGTACA 1 cut(s) 757
BsrI ACTGG 2 cut(s) 420, 435
BssECI CCNNGG 1 cut(s) 868
BssMI GATC 9 cut(s) 72, 153, 180, 433, 483, 496, 730, 838, 886
BssNI GRCGYC 3 cut(s) 5, 60, 741
BssT1I CCWWGG 1 cut(s) 868
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 2 cut(s) 517, 970
Bst6I CTCTTC 3 cut(s) 453, 700, 782
BstACI GRCGYC 3 cut(s) 5, 60, 741
BstAUI TGTACA 1 cut(s) 757
BstC8I GCNNGC 3 cut(s) 128, 300, 621
BstDEI CTNAG 3 cut(s) 42, 242, 904
BstDSI CCRYGG 1 cut(s) 868
BstF5I GGATG 4 cut(s) 314, 460, 484, 1191
BstH2I RGCGCY 1 cut(s) 575
BstHHI GCGC 2 cut(s) 340, 574
BstKTI GATC 9 cut(s) 75, 156, 183, 436, 486, 499, 733, 841, 889
BstMAI GTCTC 3 cut(s) 18, 200, 406
BstMBI GATC 9 cut(s) 72, 153, 180, 433, 483, 496, 730, 838, 886
BstMCI CGRYCG 1 cut(s) 617
BstMWI GCNNNNNNNGC 8 cut(s) 38, 52, 101, 148, 223, 686, 971, 1056
BstNI CCWGG 1 cut(s) 275
BstNSI RCATGY 3 cut(s) 991, 1008, 1059
BstSCI CCNGG 1 cut(s) 273
BstSFI CTRYAG 4 cut(s) 124, 516, 608, 681
BstSLI GKGCMC 1 cut(s) 1150
BstV1I GCAGC 6 cut(s) 79, 238, 257, 673, 1046, 1127
BstV2I GAAGAC 2 cut(s) 426, 984
BstX2I RGATCY 2 cut(s) 180, 496
BstYI RGATCY 2 cut(s) 180, 496
BsuI GTATCC 1 cut(s) 210
BtgI CCRYGG 1 cut(s) 868
BtsCI GGATG 4 cut(s) 314, 460, 484, 1191
Cac8I GCNNGC 3 cut(s) 128, 300, 621
CaiI CAGNNNCTG 1 cut(s) 680
CfoI GCGC 2 cut(s) 340, 574
Cfr13I GGNCC 3 cut(s) 13, 277, 1196
CseI GACGC 1 cut(s) 68
Csp6I GTAC 2 cut(s) 445, 758
CviAII CATG 8 cut(s) 9, 836, 869, 988, 1005, 1041, 1056, 1237
CviQI GTAC 2 cut(s) 445, 758
DdeI CTNAG 3 cut(s) 42, 242, 904
DpnI GATC 9 cut(s) 74, 155, 182, 435, 485, 498, 732, 840, 888
DpnII GATC 9 cut(s) 72, 153, 180, 433, 483, 496, 730, 838, 886
DriI GACNNNNNGTC 1 cut(s) 1194
Eam1104I CTCTTC 3 cut(s) 453, 700, 782
Eam1105I GACNNNNNGTC 1 cut(s) 1194
EarI CTCTTC 3 cut(s) 453, 700, 782
Ecl136II GAGCTC 1 cut(s) 190
Eco130I CCWWGG 1 cut(s) 868
Eco24I GRGCYC 1 cut(s) 192
Eco47I GGWCC 3 cut(s) 13, 277, 1196
Eco53kI GAGCTC 1 cut(s) 190
Eco57I CTGAAG 2 cut(s) 804, 978
Eco88I CYCGRG 3 cut(s) 210, 399, 1096
EcoICRI GAGCTC 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 273
EcoT14I CCWWGG 1 cut(s) 868
EcoT38I GRGCYC 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 868
FaeI CATG 8 cut(s) 12, 839, 872, 991, 1008, 1044, 1059, 1240
FalI AAGNNNNNCTT 2 cut(s) 917, 949
FaqI GGGAC 2 cut(s) 26, 961
FatI CATG 8 cut(s) 8, 835, 868, 987, 1004, 1040, 1055, 1236
FauI CCCGC 1 cut(s) 720
FauNDI CATATG 1 cut(s) 1192
FblI GTMKAC 1 cut(s) 390
Fnu4HI GCNGC 7 cut(s) 93, 96, 227, 271, 687, 1060, 1141
FokI GGATG 4 cut(s) 321, 467, 491, 1198
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 7 cut(s) 93, 96, 227, 271, 687, 1060, 1141
FspBI CTAG 3 cut(s) 386, 807, 893
GlaI GCGC 2 cut(s) 339, 573
GluI GCNGC 7 cut(s) 93, 96, 227, 271, 687, 1060, 1141
GsuI CTGGAG 1 cut(s) 251
HaeII RGCGCY 1 cut(s) 575
HapII CCGG 2 cut(s) 203, 280
HgaI GACGC 1 cut(s) 68
HhaI GCGC 2 cut(s) 340, 574
Hin1I GRCGYC 3 cut(s) 5, 60, 741
Hin1II CATG 8 cut(s) 12, 839, 872, 991, 1008, 1044, 1059, 1240
Hin6I GCGC 2 cut(s) 338, 572
HinP1I GCGC 2 cut(s) 338, 572
HincII GTYRAC 2 cut(s) 265, 391
HindII GTYRAC 2 cut(s) 265, 391
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 6 cut(s) 160, 208, 402, 637, 652, 794
HpaII CCGG 2 cut(s) 203, 280
HphI GGTGA 2 cut(s) 857, 1010
Hpy166II GTNNAC 5 cut(s) 265, 391, 447, 758, 860
Hpy188I TCNGA 9 cut(s) 23, 77, 187, 243, 552, 714, 739, 769, 907
Hpy8I GTNNAC 5 cut(s) 265, 391, 447, 758, 860
Hpy99I CGWCG 1 cut(s) 103
HpyAV CCTTC 2 cut(s) 328, 1062
HpyCH4III ACNGT 2 cut(s) 517, 970
HpyCH4IV ACGT 2 cut(s) 439, 741
HpyCH4V TGCA 8 cut(s) 112, 126, 137, 302, 475, 567, 689, 1062
HpyF10VI GCNNNNNNNGC 8 cut(s) 38, 52, 101, 148, 223, 686, 971, 1056
HpyF3I CTNAG 3 cut(s) 42, 242, 904
HpySE526I ACGT 2 cut(s) 439, 741
Hsp92I GRCGYC 3 cut(s) 5, 60, 741
Hsp92II CATG 8 cut(s) 12, 839, 872, 991, 1008, 1044, 1059, 1240
HspAI GCGC 2 cut(s) 338, 572
Kpn2I TCCGGA 1 cut(s) 202
Kzo9I GATC 9 cut(s) 72, 153, 180, 433, 483, 496, 730, 838, 886
LmnI GCTCC 5 cut(s) 169, 187, 223, 282, 548
Lsp1109I GCAGC 6 cut(s) 79, 238, 257, 673, 1046, 1127
MaeI CTAG 3 cut(s) 386, 807, 893
MaeII ACGT 2 cut(s) 439, 741
MaeIII GTNAC 1 cut(s) 670
MalI GATC 9 cut(s) 74, 155, 182, 435, 485, 498, 732, 840, 888
MbiI CCGCTC 1 cut(s) 727
MboI GATC 9 cut(s) 72, 153, 180, 433, 483, 496, 730, 838, 886
MflI RGATCY 2 cut(s) 180, 496
MhlI GDGCHC 3 cut(s) 192, 545, 1150
MluCI AATT 4 cut(s) 131, 960, 1013, 1212
MlyI GAGTC 3 cut(s) 202, 411, 646
MmeI TCCRAC 2 cut(s) 147, 201
MroI TCCGGA 1 cut(s) 202
MroXI GAANNNNTTC 2 cut(s) 594, 651
MseI TTAA 2 cut(s) 489, 1031
MslI CAYNNNNRTG 2 cut(s) 867, 916
MspA1I CMGCKG 4 cut(s) 46, 229, 270, 613
MspI CCGG 2 cut(s) 203, 280
MspR9I CCNGG 1 cut(s) 275
Mva1269I GAATGC 1 cut(s) 114
MvaI CCWGG 1 cut(s) 275
MwoI GCNNNNNNNGC 8 cut(s) 38, 52, 101, 148, 223, 686, 971, 1056
NcoI CCATGG 1 cut(s) 868
NdeI CATATG 1 cut(s) 1192
NdeII GATC 9 cut(s) 72, 153, 180, 433, 483, 496, 730, 838, 886
NlaIII CATG 8 cut(s) 12, 839, 872, 991, 1008, 1044, 1059, 1240
NlaIV GGNNCC 1 cut(s) 14
NmuCI GTSAC 1 cut(s) 670
NspI RCATGY 3 cut(s) 991, 1008, 1059
PaeR7I CTCGAG 2 cut(s) 210, 399
PciI ACATGT 1 cut(s) 987
PctI GAATGC 1 cut(s) 114
PdmI GAANNNNTTC 2 cut(s) 594, 651
PfeI GAWTC 3 cut(s) 160, 652, 794
PkrI GCNGC 7 cut(s) 94, 97, 228, 272, 688, 1061, 1142
PleI GAGTC 3 cut(s) 202, 410, 645
PpsI GAGTC 3 cut(s) 202, 410, 645
PscI ACATGT 1 cut(s) 987
PshBI ATTAAT 1 cut(s) 1031
Psp124BI GAGCTC 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 273
PspN4I GGNNCC 1 cut(s) 14
PspPI GGNCC 3 cut(s) 13, 277, 1196
PspXI VCTCGAGB 1 cut(s) 399
PstI CTGCAG 1 cut(s) 128
PstNI CAGNNNCTG 1 cut(s) 680
PsuI RGATCY 2 cut(s) 180, 496
PvuII CAGCTG 3 cut(s) 46, 229, 270
RsaI GTAC 2 cut(s) 446, 759
RsaNI GTAC 2 cut(s) 445, 758
RseI CAYNNNNRTG 2 cut(s) 867, 916
SacI GAGCTC 1 cut(s) 192
SalI GTCGAC 1 cut(s) 389
SaqAI TTAA 2 cut(s) 489, 1031
SatI GCNGC 7 cut(s) 93, 96, 227, 271, 687, 1060, 1141
Sau3AI GATC 9 cut(s) 72, 153, 180, 433, 483, 496, 730, 838, 886
Sau96I GGNCC 3 cut(s) 13, 277, 1196
SchI GAGTC 3 cut(s) 202, 411, 646
ScrFI CCNGG 1 cut(s) 275
SduI GDGCHC 3 cut(s) 192, 545, 1150
SfcI CTRYAG 4 cut(s) 124, 516, 608, 681
Sfr274I CTCGAG 2 cut(s) 210, 399
SinI GGWCC 3 cut(s) 13, 277, 1196
SlaI CTCGAG 2 cut(s) 210, 399
SmiMI CAYNNNNRTG 2 cut(s) 867, 916
SmlI CTYRAG 4 cut(s) 176, 191, 210, 399
SmoI CTYRAG 4 cut(s) 176, 191, 210, 399
Sse9I AATT 4 cut(s) 131, 960, 1013, 1212
SsiI CCGC 3 cut(s) 95, 613, 727
SspI AATATT 2 cut(s) 316, 1035
SspMI CTAG 3 cut(s) 386, 807, 893
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 273
StyI CCWWGG 1 cut(s) 868
TaaI ACNGT 2 cut(s) 517, 970
TaiI ACGT 2 cut(s) 442, 744
TaqI TCGA 4 cut(s) 211, 390, 400, 1173
TasI AATT 4 cut(s) 131, 960, 1013, 1212
TatI WGTACW 2 cut(s) 444, 757
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 3 cut(s) 160, 652, 794
Tru1I TTAA 2 cut(s) 489, 1031
Tru9I TTAA 2 cut(s) 489, 1031
TseFI GTSAC 1 cut(s) 670
TseI GCWGC 6 cut(s) 92, 226, 270, 686, 1059, 1140
Tsp45I GTSAC 1 cut(s) 670
TspDTI ATGAA 7 cut(s) 471, 603, 753, 786, 1017, 1026, 1096
VpaK11BI GGWCC 3 cut(s) 13, 277, 1196
VspI ATTAAT 1 cut(s) 1031
XbaI TCTAGA 1 cut(s) 806
XceI RCATGY 3 cut(s) 991, 1008, 1059
XhoI CTCGAG 2 cut(s) 210, 399
XmiI GTMKAC 1 cut(s) 390
XmnI GAANNNNTTC 2 cut(s) 594, 651
XspI CTAG 3 cut(s) 386, 807, 893
ZraI GACGTC 1 cut(s) 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.