Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005082

Physical Location & Seq

Genomic Coordinates Forward (+)

17351950 .. 17357315

Gene Structure 5366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G172600.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGCGTCGTCGTGGGACCACTTCGGAGAGATTGCAAATGTGGCTCAGTTGACCGGCCTCGACGCCGTGAGGCTGATCGGAATGATTGTGAAGGCGGCGAGCACGGCGCGAATGCACAAGAAAAATTGCAGGCAATTTGCGCTGCATCTGAAGCTGATCGGGAACTTATTGGAGCAGCTCAAGATCTCGGAGCTTAAGCGGTACCCGGAGACGCGCGAGCCTCTTGAGCAGCTCGAGGAAGCTCTAAGAAGGTCATACATTTTGGTCAATAGCTGCCAAGACCGGAGCTATCTGTATTTGCTTGCAATGGGATGGAACATTGTGTATCAGTTCAGGAAGGCTCAGAATGAAATTGATAGATACTTGAAGCTTGTGCCTCTGATTACTCTGGTGGACAATGCTCGAGTCAGGGAGAGACTGGAAGACATTGAAAAGGATCAACGTGAGTACACATTGGATGAAGAGGACAGAAAGGTACAGGATGTGATCCTTAAACCGGACCCCTCGAAAAATGACACTGTAGTGCTGAAGAAAACACTTTCTTGCTCTTATCCAAACTTGGGTTTTAATGAGGCGCTGCAAAAGGAAAATGAAAAGCTTCAACTTGAACTACAACGGTCCCAATCCATTTATGATGTGAGTCAATGTGAAGTAATTCAGCGTTTGCTAGAAGTGACAGAAACTGTCGCTTCAAAGTCTTCCCCCGAAAAAAATAATAAGAAAATAGAGCGGAATTATTCAGATGCCAATAGTGAGAAAGAACCTTCATCTAATGAAAGCTATCAGAAAAGTGAATCTCGCAAAATGTCAAGAAACACATCTTCAGTTTCTTCTGGACATGATTTGCTGTCAACTAGAGGTTCACATCGCCATGAAGAATGGAATACTGATCTACTTGGATGTTGCTCAGAACCATCTCTGTGTATAAAGACATTCTTCTATCCTTGTGGGACGTTTTCTAAAATTGCTTCTGTGGCAACTAATAGGCATATGTCTTCAGCAGAAGCATGTAATGAATTGATGGCTTATTCGTTAGTATTGTCTTGCTGTTGCTATACATGCTGCATTCGAAGGAAACTTCGCAAGACGTTGAATATCTCGGGAGGCTTCATTGATGACTTCCTTTCACATTTTATGTGTTGCTGCTGCGCCCTTGTTCAAGAATGGCGAGAAGTTGAACTACGCGGGATTCCTTATGGTGCTGAAAAGACAAAAATAAGCCCGCCACCCTCACAGTACATGGAAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

417

Amino Acids

47.71

Weight (kDa)

7.43

Isoelectric Point (pI)

53.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35920 AT4G35920 AT4G35920 AT4G35920 AT4G35920
fragaria_vesca	FvH4_1g11310 FvH4_1g11310 FvH4_1g11310 FvH4_1g11310 FvH4_1g11310
malus_domestica	MD02G1127400.v1.1 MD15G1241400.v1.1
prunus_persica	Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1
pyrus_communis	pycom02g09950 pycom15g21290
rosa_chinensis	RchiOBHm_Chr2g0098791
rosa_laevigata	RLG00000016828
rosa_multiflora	Rmu_sc0002776.1_g000035
rosa_roxburghii	Rroxscaffold_2G00143700
rosa_rugosa	Rorug02G0074800
rosa_samantha	Rh2AG122600 Rh2BG126300 Rh2CG127200 Rh2DG128200
rosa_wichuraiana	Rw0G004270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	201
AccB1I	GGYRCC	1 cut(s)	201
AccBSI	CCGCTC	1 cut(s)	730
AccII	CGCG	4 cut(s)	109, 214, 216, 1185
AciI	CCGC	5 cut(s)	95, 199, 730, 1185, 1223
AclWI	GGATC	2 cut(s)	444, 481
AcuI	CTGAAG	4 cut(s)	170, 548, 807, 981
AcyI	GRCGYC	2 cut(s)	5, 63
AfaI	GTAC	4 cut(s)	203, 449, 477, 1238
AfiI	CCNNNNNNNGG	2 cut(s)	496, 560
AflII	CTTAAG	1 cut(s)	194
AgsI	TTSAA	8 cut(s)	367, 431, 602, 608, 693, 1093, 1160, 1178
AleI	CACNNNNGTG	1 cut(s)	521
Alw21I	GWGCWC	1 cut(s)	104
Alw26I	GTCTC	2 cut(s)	203, 409
AlwI	GGATC	2 cut(s)	444, 481
AlwNI	CAGNNNCTG	1 cut(s)	683
Ama87I	CYCGRG	3 cut(s)	233, 402, 1099
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	8 cut(s)	142, 175, 229, 273, 577, 1062, 1143, 1146
Asp700I	GAANNNNTTC	2 cut(s)	597, 654
Asp718I	GGTACC	1 cut(s)	201
AspLEI	GCGC	5 cut(s)	109, 142, 216, 577, 1151
AspS9I	GGNCC	3 cut(s)	16, 499, 618
AsuC2I	CCSGG	1 cut(s)	206
AsuII	TTCGAA	1 cut(s)	1069
AvaI	CYCGRG	3 cut(s)	233, 402, 1099
AvaII	GGWCC	3 cut(s)	16, 499, 618
BanI	GGYRCC	1 cut(s)	201
BarI	GAAGNNNNNNTAC	2 cut(s)	1164, 1196
BbsI	GAAGAC	3 cut(s)	429, 690, 987
Bbv12I	GWGCWC	1 cut(s)	104
BbvI	GCAGC	8 cut(s)	129, 187, 241, 260, 564, 1049, 1130, 1133
BccI	CCATC	3 cut(s)	306, 922, 1015
BceAI	ACGGC	2 cut(s)	50, 120
BcnI	CCSGG	1 cut(s)	206
BcoDI	GTCTC	2 cut(s)	203, 409
BfaI	CTAG	2 cut(s)	668, 855
BfmI	CTRYAG	1 cut(s)	519
BfoI	RGCGCY	1 cut(s)	578
BfrI	CTTAAG	1 cut(s)	194
BglII	AGATCT	1 cut(s)	183
BisI	GCNGC	9 cut(s)	96, 143, 176, 230, 274, 578, 1063, 1144, 1147
BlsI	GCNGC	9 cut(s)	97, 144, 177, 231, 275, 579, 1064, 1145, 1148
Bme1390I	CCNGG	1 cut(s)	206
Bme18I	GGWCC	3 cut(s)	16, 499, 618
BmeT110I	CYCGRG	3 cut(s)	233, 402, 1099
BmgT120I	GGNCC	3 cut(s)	16, 499, 618
BmiI	GGNNCC	4 cut(s)	17, 203, 501, 620
BmrFI	CCNGG	1 cut(s)	206
BmsI	GCATC	2 cut(s)	154, 733
BpiI	GAAGAC	3 cut(s)	429, 690, 987
Bpu14I	TTCGAA	1 cut(s)	1069
BpuEI	CTTGAG	2 cut(s)	164, 245
BpuMI	CCSGG	1 cut(s)	206
BsaHI	GRCGYC	2 cut(s)	5, 63
BsaWI	WCCGGW	2 cut(s)	282, 496
Bsc4I	CCNNNNNNNGG	2 cut(s)	496, 560
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	423
Bse3DI	GCAATG	1 cut(s)	312
BseGI	GGATG	4 cut(s)	317, 463, 487, 905
BseLI	CCNNNNNNNGG	2 cut(s)	496, 560
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	3 cut(s)	59, 356, 921
BseNI	ACTGG	1 cut(s)	423
BseXI	GCAGC	8 cut(s)	129, 187, 241, 260, 564, 1049, 1130, 1133
Bsh1236I	CGCG	4 cut(s)	109, 214, 216, 1185
BshFI	GGCC	1 cut(s)	57
BshNI	GGYRCC	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	104
BsiHKCI	CYCGRG	3 cut(s)	233, 402, 1099
BsiSI	CCGG	4 cut(s)	54, 206, 283, 497
BslFI	GGGAC	3 cut(s)	29, 604, 964
BslI	CCNNNNNNNGG	2 cut(s)	496, 560
BsmAI	GTCTC	2 cut(s)	203, 409
BsmBI	CGTCTC	1 cut(s)	203
BsmFI	GGGAC	3 cut(s)	29, 604, 964
BsmI	GAATGC	2 cut(s)	117, 1065
BsnI	GGCC	1 cut(s)	57
BsoBI	CYCGRG	3 cut(s)	233, 402, 1099
Bsp119I	TTCGAA	1 cut(s)	1069
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp143I	GATC	6 cut(s)	75, 156, 183, 436, 486, 889
BspACI	CCGC	5 cut(s)	95, 199, 730, 1185, 1223
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	3 cut(s)	58, 355, 920
BspFNI	CGCG	4 cut(s)	109, 214, 216, 1185
BspLI	GGNNCC	4 cut(s)	17, 203, 501, 620
BspPI	GGATC	2 cut(s)	444, 481
BspT104I	TTCGAA	1 cut(s)	1069
BspT107I	GGYRCC	1 cut(s)	201
BspTI	CTTAAG	1 cut(s)	194
BsrBI	CCGCTC	1 cut(s)	730
BsrDI	GCAATG	1 cut(s)	312
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	423
BssAI	RCCGGY	1 cut(s)	53
BssMI	GATC	6 cut(s)	75, 156, 183, 436, 486, 889
BssNI	GRCGYC	2 cut(s)	5, 63
Bst4CI	ACNGT	4 cut(s)	520, 618, 685, 1236
Bst6I	CTCTTC	1 cut(s)	456
BstACI	GRCGYC	2 cut(s)	5, 63
BstAFI	CTTAAG	1 cut(s)	194
BstBI	TTCGAA	1 cut(s)	1069
BstC8I	GCNNGC	5 cut(s)	100, 131, 218, 303, 1223
BstDEI	CTNAG	4 cut(s)	45, 245, 342, 907
BstF5I	GGATG	4 cut(s)	317, 463, 487, 905
BstFNI	CGCG	4 cut(s)	109, 214, 216, 1185
BstH2I	RGCGCY	1 cut(s)	578
BstHHI	GCGC	5 cut(s)	109, 142, 216, 577, 1151
BstKTI	GATC	6 cut(s)	78, 159, 186, 439, 489, 892
BstMAI	GTCTC	2 cut(s)	203, 409
BstMBI	GATC	6 cut(s)	75, 156, 183, 436, 486, 889
BstMWI	GCNNNNNNNGC	7 cut(s)	41, 104, 139, 151, 226, 974, 1059
BstNSI	RCATGY	2 cut(s)	1011, 1062
BstSCI	CCNGG	1 cut(s)	204
BstSFI	CTRYAG	1 cut(s)	519
BstUI	CGCG	4 cut(s)	109, 214, 216, 1185
BstV1I	GCAGC	8 cut(s)	129, 187, 241, 260, 564, 1049, 1130, 1133
BstV2I	GAAGAC	3 cut(s)	429, 690, 987
BstX2I	RGATCY	1 cut(s)	183
BstYI	RGATCY	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	57
BtgZI	GCGATG	1 cut(s)	851
BtsCI	GGATG	4 cut(s)	317, 463, 487, 905
BtsIMutI	CAGTG	1 cut(s)	516
Cac8I	GCNNGC	5 cut(s)	100, 131, 218, 303, 1223
CaiI	CAGNNNCTG	1 cut(s)	683
CfoI	GCGC	5 cut(s)	109, 142, 216, 577, 1151
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	3 cut(s)	16, 499, 618
CseI	GACGC	2 cut(s)	71, 220
Csp6I	GTAC	4 cut(s)	202, 448, 476, 1237
CviAII	CATG	5 cut(s)	839, 872, 1008, 1059, 1240
CviQI	GTAC	4 cut(s)	202, 448, 476, 1237
DdeI	CTNAG	4 cut(s)	45, 245, 342, 907
DpnI	GATC	6 cut(s)	77, 158, 185, 438, 488, 891
DpnII	GATC	6 cut(s)	75, 156, 183, 436, 486, 889
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
Eco47I	GGWCC	3 cut(s)	16, 499, 618
Eco57I	CTGAAG	4 cut(s)	170, 548, 807, 981
Eco88I	CYCGRG	3 cut(s)	233, 402, 1099
Esp3I	CGTCTC	1 cut(s)	203
FaeI	CATG	5 cut(s)	842, 875, 1011, 1062, 1243
FalI	AAGNNNNNCTT	2 cut(s)	920, 952
FaqI	GGGAC	3 cut(s)	29, 604, 964
FatI	CATG	5 cut(s)	838, 871, 1007, 1058, 1239
FauI	CCCGC	2 cut(s)	1178, 1230
FauNDI	CATATG	1 cut(s)	990
Fnu4HI	GCNGC	9 cut(s)	96, 143, 176, 230, 274, 578, 1063, 1144, 1147
FokI	GGATG	4 cut(s)	324, 470, 494, 912
Fsp4HI	GCNGC	9 cut(s)	96, 143, 176, 230, 274, 578, 1063, 1144, 1147
FspBI	CTAG	2 cut(s)	668, 855
GlaI	GCGC	5 cut(s)	108, 141, 215, 576, 1150
GluI	GCNGC	9 cut(s)	96, 143, 176, 230, 274, 578, 1063, 1144, 1147
HaeII	RGCGCY	1 cut(s)	578
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	4 cut(s)	54, 206, 283, 497
HgaI	GACGC	2 cut(s)	71, 220
HhaI	GCGC	5 cut(s)	109, 142, 216, 577, 1151
Hin1I	GRCGYC	2 cut(s)	5, 63
Hin1II	CATG	5 cut(s)	842, 875, 1011, 1062, 1243
Hin6I	GCGC	5 cut(s)	107, 140, 214, 575, 1149
HinP1I	GCGC	5 cut(s)	107, 140, 214, 575, 1149
HincII	GTYRAC	2 cut(s)	51, 852
HindII	GTYRAC	2 cut(s)	51, 852
HindIII	AAGCTT	2 cut(s)	368, 596
HinfI	GANTC	4 cut(s)	405, 640, 794, 1189
HpaII	CCGG	4 cut(s)	54, 206, 283, 497
Hpy166II	GTNNAC	5 cut(s)	51, 394, 450, 852, 863
Hpy188I	TCNGA	9 cut(s)	26, 80, 150, 190, 345, 381, 742, 786, 910
Hpy188III	TCNNGA	8 cut(s)	160, 181, 224, 334, 810, 834, 1101, 1160
Hpy8I	GTNNAC	5 cut(s)	51, 394, 450, 852, 863
Hpy99I	CGWCG	3 cut(s)	10, 13, 65
HpyAV	CCTTC	5 cut(s)	85, 243, 331, 774, 1065
HpyCH4III	ACNGT	4 cut(s)	520, 618, 685, 1236
HpyCH4IV	ACGT	3 cut(s)	442, 953, 1088
HpyCH4V	TGCA	7 cut(s)	35, 115, 129, 145, 305, 580, 1065
HpyF10VI	GCNNNNNNNGC	7 cut(s)	41, 104, 139, 151, 226, 974, 1059
HpyF3I	CTNAG	4 cut(s)	45, 245, 342, 907
HpySE526I	ACGT	3 cut(s)	442, 953, 1088
Hsp92I	GRCGYC	2 cut(s)	5, 63
Hsp92II	CATG	5 cut(s)	842, 875, 1011, 1062, 1243
HspAI	GCGC	5 cut(s)	107, 140, 214, 575, 1149
KpnI	GGTACC	1 cut(s)	205
Kzo9I	GATC	6 cut(s)	75, 156, 183, 436, 486, 889
LmnI	GCTCC	3 cut(s)	172, 190, 285
Lsp1109I	GCAGC	8 cut(s)	129, 187, 241, 260, 564, 1049, 1130, 1133
LweI	GCATC	2 cut(s)	154, 733
MaeI	CTAG	2 cut(s)	668, 855
MaeII	ACGT	3 cut(s)	442, 953, 1088
MaeIII	GTNAC	1 cut(s)	673
MalI	GATC	6 cut(s)	77, 158, 185, 438, 488, 891
MbiI	CCGCTC	1 cut(s)	730
MboI	GATC	6 cut(s)	75, 156, 183, 436, 486, 889
MboII	GAAGA	9 cut(s)	434, 473, 541, 690, 813, 822, 887, 928, 987
MflI	RGATCY	1 cut(s)	183
MhlI	GDGCHC	1 cut(s)	104
MluCI	AATT	7 cut(s)	124, 134, 351, 654, 733, 963, 1016
MlyI	GAGTC	2 cut(s)	414, 649
MroXI	GAANNNNTTC	2 cut(s)	597, 654
MseI	TTAA	3 cut(s)	195, 492, 567
MslI	CAYNNNNRTG	3 cut(s)	521, 870, 919
MspCI	CTTAAG	1 cut(s)	194
MspI	CCGG	4 cut(s)	54, 206, 283, 497
MspR9I	CCNGG	1 cut(s)	206
Mva1269I	GAATGC	2 cut(s)	117, 1065
MvnI	CGCG	4 cut(s)	109, 214, 216, 1185
MwoI	GCNNNNNNNGC	7 cut(s)	41, 104, 139, 151, 226, 974, 1059
NciI	CCSGG	1 cut(s)	206
NdeI	CATATG	1 cut(s)	990
NdeII	GATC	6 cut(s)	75, 156, 183, 436, 486, 889
NlaIII	CATG	5 cut(s)	842, 875, 1011, 1062, 1243
NlaIV	GGNNCC	4 cut(s)	17, 203, 501, 620
NmuCI	GTSAC	1 cut(s)	673
NspI	RCATGY	2 cut(s)	1011, 1062
NspV	TTCGAA	1 cut(s)	1069
OliI	CACNNNNGTG	1 cut(s)	521
PaeR7I	CTCGAG	2 cut(s)	233, 402
PctI	GAATGC	2 cut(s)	117, 1065
PdmI	GAANNNNTTC	2 cut(s)	597, 654
PfeI	GAWTC	2 cut(s)	794, 1189
PkrI	GCNGC	9 cut(s)	97, 144, 177, 231, 275, 579, 1064, 1145, 1148
PleI	GAGTC	2 cut(s)	413, 648
PpsI	GAGTC	2 cut(s)	413, 648
PspN4I	GGNNCC	4 cut(s)	17, 203, 501, 620
PspPI	GGNCC	3 cut(s)	16, 499, 618
PspXI	VCTCGAGB	2 cut(s)	233, 402
PstNI	CAGNNNCTG	1 cut(s)	683
PsuI	RGATCY	1 cut(s)	183
RsaI	GTAC	4 cut(s)	203, 449, 477, 1238
RsaNI	GTAC	4 cut(s)	202, 448, 476, 1237
RseI	CAYNNNNRTG	3 cut(s)	521, 870, 919
SaqAI	TTAA	3 cut(s)	195, 492, 567
SatI	GCNGC	9 cut(s)	96, 143, 176, 230, 274, 578, 1063, 1144, 1147
Sau3AI	GATC	6 cut(s)	75, 156, 183, 436, 486, 889
Sau96I	GGNCC	3 cut(s)	16, 499, 618
SchI	GAGTC	2 cut(s)	414, 649
ScrFI	CCNGG	1 cut(s)	206
SduI	GDGCHC	1 cut(s)	104
SfaNI	GCATC	2 cut(s)	154, 733
SfcI	CTRYAG	1 cut(s)	519
Sfr274I	CTCGAG	2 cut(s)	233, 402
SfuI	TTCGAA	1 cut(s)	1069
SinI	GGWCC	3 cut(s)	16, 499, 618
SlaI	CTCGAG	2 cut(s)	233, 402
SmiMI	CAYNNNNRTG	3 cut(s)	521, 870, 919
SmlI	CTYRAG	5 cut(s)	179, 194, 224, 233, 402
SmoI	CTYRAG	5 cut(s)	179, 194, 224, 233, 402
Sse9I	AATT	7 cut(s)	124, 134, 351, 654, 733, 963, 1016
SsiI	CCGC	5 cut(s)	95, 199, 730, 1185, 1223
SspMI	CTAG	2 cut(s)	668, 855
StyD4I	CCNGG	1 cut(s)	204
TaaI	ACNGT	4 cut(s)	520, 618, 685, 1236
TaiI	ACGT	3 cut(s)	445, 956, 1091
TaqI	TCGA	5 cut(s)	60, 234, 403, 506, 1069
TasI	AATT	7 cut(s)	124, 134, 351, 654, 733, 963, 1016
TatI	WGTACW	2 cut(s)	447, 1236
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	2 cut(s)	794, 1189
Tru1I	TTAA	3 cut(s)	195, 492, 567
Tru9I	TTAA	3 cut(s)	195, 492, 567
TscAI	CASTG	1 cut(s)	523
TseFI	GTSAC	1 cut(s)	673
TseI	GCWGC	8 cut(s)	142, 175, 229, 273, 577, 1062, 1143, 1146
Tsp45I	GTSAC	1 cut(s)	673
TspDTI	ATGAA	8 cut(s)	363, 474, 606, 756, 789, 888, 1029, 1099
TspRI	CASTG	1 cut(s)	523
Vha464I	CTTAAG	1 cut(s)	194
VpaK11BI	GGWCC	3 cut(s)	16, 499, 618
XceI	RCATGY	2 cut(s)	1011, 1062
XhoI	CTCGAG	2 cut(s)	233, 402
XmnI	GAANNNNTTC	2 cut(s)	597, 654
XspI	CTAG	2 cut(s)	668, 855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.