Rh2AG122600

Protein MID1-COMPLEMENTING ACTIVITY

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
11130370 .. 11134228
3859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG122600.1

Sequence Viewer

Length: 1248 bp
ATGGCGTCATGGGACCACTTCGGGGATATTGCCAATGTGGCTCAGTTGACGGGGCTGGACGCCGTAAAGCTGATCGGAATGATCGTGAAGGCGGCGGCCACGGCGAGAATGCACAAGAAGAACTGCAGGCAATTTGCGCAGCATCTGAAGCTGATCGGGAATTTATTGGAGCAACTCAAGATCTCGGAGCTCAAGAGGTATCCGGAGACTCGAGAGCCGTTGGAGCAGCTGGAGGAGGCTCTGAGGAGGTCATACATTTTGGTCAACAGCTGCCAAGACCGGAGCTATTTGTATCTGCTTGCAATGGGATGGAACATCGTGTACCAGTTCAGGAAGGCTCAGAATGAAATTGATAGATACTTGAAGCTTGTGCCTTTGATTACTCTAGTGGATAATGCTCGAGTCAGGGAGAGACTGGAAGACATTGAACTGGATCAACGTGAGTACACATTGGATGAAGAGGATAGGAAGGTGCACGATGTGATCCTTAAACCAGATCCCTGTAAAAATGATACTGTAGTGTTGAAGAAAACGCTTTCGTGCTCCTATCCAAACTTGCCTTTTTGCAAGGCGCTTGAGAAGGAAAATGAAAAACTTCAACTTGAACTACAACGGTCGCAATCTACTTATGATGTGACTCAATGTGAAGTGATTCAGCGTTTGATAGAAGTGACTGAAACTGTAGCTGCAAACTCTTCCCCTGAAAAAAATCAGAAGAAATTCGAGCGGAATCATTCAGATGTCAATAGTGCGAAAGAACATTCATCTGATGAAAAAAACTACAAGAAGAGTCAACCTCACATTTCTAGAAACACATCTTCAGTCTCTTCTGGACATGATCTGTTGTCAAACAGAGGTTCACATTACCATGAAGAATGGAATACTGATCTTCTAGGTTGTTGCTCGGAGCCATCTTTGTGTTTCAAGACATTCTTCTATCCTTGTGGGACATTTTCAAAAATTGCTACTGTGGCAACTAACAGGCACATGTCTTCAGCTGAAGCATGTAATGAATTGATGGCGTATTCGCTAGTACTGTCGTGCTGTTGCTACACATGCTGCATTAGAAGGAAACTTCGCAAGACGTTGAATATCTCGGGTGGCTTCATTGATGATTTCCTTTCACATTTTATGTGTTGCTGCTGTGCCCTTGTCCAAGAATGGCGAGAAGTCGAAATACGTGGGATGGCATATGGTCCTGAGAAGACAAAAATTAGCCCTCCACCCTCACAATACATGGAATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

415

Amino Acids

47.7

Weight (kDa)

7.12

Isoelectric Point (pI)

49.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MCAfunc PF19584 24 - 165 1.7e-84 MCAfunc domain
PLAC8 PF04749 293 - 390 6.5e-20 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 138
AccBSI CCGCTC 1 cut(s) 727
AccIII TCCGGA 1 cut(s) 202
AciI CCGC 3 cut(s) 92, 95, 727
AclWI GGATC 3 cut(s) 441, 478, 491
AcoI YGGCCR 1 cut(s) 96
AcsI RAATTY 2 cut(s) 160, 719
AcuI CTGAAG 4 cut(s) 167, 804, 978, 1020
AcyI GRCGYC 2 cut(s) 5, 60
AdeI CACNNNGTG 1 cut(s) 481
AfaI GTAC 3 cut(s) 323, 446, 1035
AfiI CCNNNNNNNGG 1 cut(s) 22
AflIII ACRYGT 1 cut(s) 987
AgsI TTSAA 8 cut(s) 364, 428, 526, 599, 605, 925, 957, 1090
AluBI AGCT 9 cut(s) 70, 151, 190, 229, 270, 285, 367, 686, 998
AluI AGCT 9 cut(s) 70, 151, 190, 229, 270, 285, 367, 686, 998
Alw21I GWGCWC 3 cut(s) 192, 477, 545
Alw26I GTCTC 3 cut(s) 200, 406, 829
Alw44I GTGCAC 1 cut(s) 473
AlwI GGATC 3 cut(s) 441, 478, 491
AlwNI CAGNNNCTG 1 cut(s) 145
Ama87I CYCGRG 3 cut(s) 210, 399, 1096
Aor13HI TCCGGA 1 cut(s) 202
AoxI GGCC 1 cut(s) 96
ApaLI GTGCAC 1 cut(s) 473
ApeKI GCWGC 6 cut(s) 139, 226, 270, 686, 1059, 1140
ApoI RAATTY 2 cut(s) 160, 719
Asp700I GAANNNNTTC 3 cut(s) 594, 651, 719
AspLEI GCGC 2 cut(s) 139, 574
AspS9I GGNCC 2 cut(s) 13, 1196
AvaI CYCGRG 3 cut(s) 210, 399, 1096
AvaII GGWCC 2 cut(s) 13, 1196
BaeGI GKGCMC 2 cut(s) 477, 1150
BaeI ACNNNNGTAYC 2 cut(s) 504, 537
BanII GRGCYC 1 cut(s) 192
BarI GAAGNNNNNNTAC 2 cut(s) 1161, 1193
BbsI GAAGAC 3 cut(s) 426, 984, 1211
Bbv12I GWGCWC 3 cut(s) 192, 477, 545
BbvI GCAGC 6 cut(s) 151, 238, 257, 673, 1046, 1127
BccI CCATC 4 cut(s) 303, 919, 1012, 1180
BceAI ACGGC 3 cut(s) 47, 117, 202
BciVI GTATCC 1 cut(s) 210
BcoDI GTCTC 3 cut(s) 200, 406, 829
BfaI CTAG 4 cut(s) 386, 807, 893, 1031
BfmI CTRYAG 3 cut(s) 124, 516, 681
BfoI RGCGCY 1 cut(s) 575
BfuI GTATCC 1 cut(s) 210
BglI GCCNNNNNGGC 1 cut(s) 38
BglII AGATCT 1 cut(s) 180
BisI GCNGC 8 cut(s) 93, 96, 140, 227, 271, 687, 1060, 1141
BlsI GCNGC 8 cut(s) 94, 97, 141, 228, 272, 688, 1061, 1142
BmcAI AGTACT 1 cut(s) 1035
Bme18I GGWCC 2 cut(s) 13, 1196
BmeT110I CYCGRG 3 cut(s) 210, 399, 1096
BmgT120I GGNCC 2 cut(s) 13, 1196
BmiI GGNNCC 2 cut(s) 14, 909
BmsI GCATC 1 cut(s) 151
BpiI GAAGAC 3 cut(s) 426, 984, 1211
BplI GAGNNNNNCTC 2 cut(s) 781, 813
BpmI CTGGAG 1 cut(s) 251
BpuEI CTTGAG 3 cut(s) 161, 176, 596
BsaAI YACGTR 1 cut(s) 1181
BsaHI GRCGYC 2 cut(s) 5, 60
BsaJI CCNNGG 1 cut(s) 99
BsaWI WCCGGW 2 cut(s) 202, 279
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse1I ACTGG 3 cut(s) 325, 420, 435
Bse3DI GCAATG 1 cut(s) 309
BseAI TCCGGA 1 cut(s) 202
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 3 cut(s) 314, 460, 1191
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMI GCAATG 1 cut(s) 309
BseMII CTCAG 4 cut(s) 56, 233, 353, 1191
BseNI ACTGG 3 cut(s) 325, 420, 435
BseRI GAGGAG 2 cut(s) 248, 259
BseSI GKGCMC 2 cut(s) 477, 1150
BseXI GCAGC 6 cut(s) 151, 238, 257, 673, 1046, 1127
Bsh1285I CGRYCG 1 cut(s) 617
BshFI GGCC 1 cut(s) 98
BsiEI CGRYCG 1 cut(s) 617
BsiHKAI GWGCWC 3 cut(s) 192, 477, 545
BsiHKCI CYCGRG 3 cut(s) 210, 399, 1096
BsiSI CCGG 2 cut(s) 203, 280
BslFI GGGAC 2 cut(s) 26, 961
BslI CCNNNNNNNGG 1 cut(s) 22
BsmAI GTCTC 3 cut(s) 200, 406, 829
BsmFI GGGAC 2 cut(s) 26, 961
BsmI GAATGC 1 cut(s) 114
BsnI GGCC 1 cut(s) 98
BsoBI CYCGRG 3 cut(s) 210, 399, 1096
Bsp1286I GDGCHC 4 cut(s) 192, 477, 545, 1150
Bsp13I TCCGGA 1 cut(s) 202
Bsp143I GATC 9 cut(s) 72, 81, 153, 180, 433, 483, 496, 838, 886
BspACI CCGC 3 cut(s) 92, 95, 727
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 4 cut(s) 55, 234, 352, 1192
BspEI TCCGGA 1 cut(s) 202
BspLI GGNNCC 2 cut(s) 14, 909
BspMAI CTGCAG 1 cut(s) 128
BspPI GGATC 3 cut(s) 441, 478, 491
BsrBI CCGCTC 1 cut(s) 727
BsrDI GCAATG 1 cut(s) 309
BsrI ACTGG 3 cut(s) 325, 420, 435
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 9 cut(s) 72, 81, 153, 180, 433, 483, 496, 838, 886
BssNI GRCGYC 2 cut(s) 5, 60
Bst4CI ACNGT 5 cut(s) 517, 615, 682, 970, 1038
Bst6I CTCTTC 4 cut(s) 453, 700, 782, 832
BstACI GRCGYC 2 cut(s) 5, 60
BstBAI YACGTR 1 cut(s) 1181
BstC8I GCNNGC 2 cut(s) 128, 300
BstDEI CTNAG 4 cut(s) 42, 242, 339, 1200
BstDSI CCRYGG 1 cut(s) 99
BstF5I GGATG 3 cut(s) 314, 460, 1191
BstH2I RGCGCY 1 cut(s) 575
BstHHI GCGC 2 cut(s) 139, 574
BstKTI GATC 9 cut(s) 75, 84, 156, 183, 436, 486, 499, 841, 889
BstMAI GTCTC 3 cut(s) 200, 406, 829
BstMBI GATC 9 cut(s) 72, 81, 153, 180, 433, 483, 496, 838, 886
BstMCI CGRYCG 1 cut(s) 617
BstMWI GCNNNNNNNGC 7 cut(s) 38, 101, 136, 148, 223, 971, 1056
BstNSI RCATGY 3 cut(s) 991, 1008, 1059
BstSFI CTRYAG 3 cut(s) 124, 516, 681
BstSLI GKGCMC 2 cut(s) 477, 1150
BstV1I GCAGC 6 cut(s) 151, 238, 257, 673, 1046, 1127
BstV2I GAAGAC 3 cut(s) 426, 984, 1211
BstX2I RGATCY 2 cut(s) 180, 496
BstYI RGATCY 2 cut(s) 180, 496
BsuI GTATCC 1 cut(s) 210
BsuRI GGCC 1 cut(s) 98
BtgI CCRYGG 1 cut(s) 99
BtsCI GGATG 3 cut(s) 314, 460, 1191
Cac8I GCNNGC 2 cut(s) 128, 300
CaiI CAGNNNCTG 1 cut(s) 145
CfoI GCGC 2 cut(s) 139, 574
Cfr13I GGNCC 2 cut(s) 13, 1196
CseI GACGC 1 cut(s) 68
Csp6I GTAC 3 cut(s) 322, 445, 1034
CviAII CATG 7 cut(s) 9, 836, 869, 988, 1005, 1056, 1237
CviQI GTAC 3 cut(s) 322, 445, 1034
DdeI CTNAG 4 cut(s) 42, 242, 339, 1200
DpnI GATC 9 cut(s) 74, 83, 155, 182, 435, 485, 498, 840, 888
DpnII GATC 9 cut(s) 72, 81, 153, 180, 433, 483, 496, 838, 886
DraIII CACNNNGTG 1 cut(s) 481
EaeI YGGCCR 1 cut(s) 96
Eam1104I CTCTTC 4 cut(s) 453, 700, 782, 832
EarI CTCTTC 4 cut(s) 453, 700, 782, 832
Ecl136II GAGCTC 1 cut(s) 190
Eco24I GRGCYC 1 cut(s) 192
Eco47I GGWCC 2 cut(s) 13, 1196
Eco53kI GAGCTC 1 cut(s) 190
Eco57I CTGAAG 4 cut(s) 167, 804, 978, 1020
Eco88I CYCGRG 3 cut(s) 210, 399, 1096
EcoICRI GAGCTC 1 cut(s) 190
EcoT38I GRGCYC 1 cut(s) 192
FaeI CATG 7 cut(s) 12, 839, 872, 991, 1008, 1059, 1240
FalI AAGNNNNNCTT 2 cut(s) 917, 949
FaqI GGGAC 2 cut(s) 26, 961
FatI CATG 7 cut(s) 8, 835, 868, 987, 1004, 1055, 1236
FauNDI CATATG 1 cut(s) 1192
Fnu4HI GCNGC 8 cut(s) 93, 96, 140, 227, 271, 687, 1060, 1141
FokI GGATG 3 cut(s) 321, 467, 1198
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 8 cut(s) 93, 96, 140, 227, 271, 687, 1060, 1141
FspBI CTAG 4 cut(s) 386, 807, 893, 1031
FspI TGCGCA 1 cut(s) 138
GlaI GCGC 2 cut(s) 138, 573
GluI GCNGC 8 cut(s) 93, 96, 140, 227, 271, 687, 1060, 1141
GsuI CTGGAG 1 cut(s) 251
HaeII RGCGCY 1 cut(s) 575
HaeIII GGCC 1 cut(s) 98
HapII CCGG 2 cut(s) 203, 280
HgaI GACGC 1 cut(s) 68
HhaI GCGC 2 cut(s) 139, 574
Hin1I GRCGYC 2 cut(s) 5, 60
Hin1II CATG 7 cut(s) 12, 839, 872, 991, 1008, 1059, 1240
Hin6I GCGC 2 cut(s) 137, 572
HinP1I GCGC 2 cut(s) 137, 572
HincII GTYRAC 3 cut(s) 48, 265, 794
HindII GTYRAC 3 cut(s) 48, 265, 794
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 7 cut(s) 208, 402, 637, 652, 730, 790, 1241
HpaII CCGG 2 cut(s) 203, 280
Hpy166II GTNNAC 7 cut(s) 48, 265, 322, 447, 475, 794, 860
Hpy188I TCNGA 9 cut(s) 77, 147, 187, 243, 342, 714, 739, 769, 907
Hpy8I GTNNAC 7 cut(s) 48, 265, 322, 447, 475, 794, 860
HpyAV CCTTC 5 cut(s) 82, 328, 463, 574, 1062
HpyCH4III ACNGT 5 cut(s) 517, 615, 682, 970, 1038
HpyCH4IV ACGT 3 cut(s) 439, 1085, 1180
HpyCH4V TGCA 7 cut(s) 112, 126, 302, 475, 567, 689, 1062
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 101, 136, 148, 223, 971, 1056
HpyF3I CTNAG 4 cut(s) 42, 242, 339, 1200
HpySE526I ACGT 3 cut(s) 439, 1085, 1180
Hsp92I GRCGYC 2 cut(s) 5, 60
Hsp92II CATG 7 cut(s) 12, 839, 872, 991, 1008, 1059, 1240
HspAI GCGC 2 cut(s) 137, 572
Kpn2I TCCGGA 1 cut(s) 202
Kzo9I GATC 9 cut(s) 72, 81, 153, 180, 433, 483, 496, 838, 886
LmnI GCTCC 6 cut(s) 169, 187, 223, 282, 548, 907
Lsp1109I GCAGC 6 cut(s) 151, 238, 257, 673, 1046, 1127
LweI GCATC 1 cut(s) 151
MaeI CTAG 4 cut(s) 386, 807, 893, 1031
MaeII ACGT 3 cut(s) 439, 1085, 1180
MaeIII GTNAC 2 cut(s) 634, 670
MalI GATC 9 cut(s) 74, 83, 155, 182, 435, 485, 498, 840, 888
MbiI CCGCTC 1 cut(s) 727
MboI GATC 9 cut(s) 72, 81, 153, 180, 433, 483, 496, 838, 886
MflI RGATCY 2 cut(s) 180, 496
MhlI GDGCHC 4 cut(s) 192, 477, 545, 1150
MluCI AATT 7 cut(s) 131, 160, 348, 719, 960, 1013, 1212
MlyI GAGTC 4 cut(s) 202, 411, 631, 799
MmeI TCCRAC 1 cut(s) 201
MroI TCCGGA 1 cut(s) 202
MroXI GAANNNNTTC 3 cut(s) 594, 651, 719
MseI TTAA 1 cut(s) 489
MslI CAYNNNNRTG 3 cut(s) 738, 867, 916
MspA1I CMGCKG 3 cut(s) 229, 270, 998
MspI CCGG 2 cut(s) 203, 280
Mva1269I GAATGC 1 cut(s) 114
MwoI GCNNNNNNNGC 7 cut(s) 38, 101, 136, 148, 223, 971, 1056
NdeI CATATG 1 cut(s) 1192
NdeII GATC 9 cut(s) 72, 81, 153, 180, 433, 483, 496, 838, 886
NlaIII CATG 7 cut(s) 12, 839, 872, 991, 1008, 1059, 1240
NlaIV GGNNCC 2 cut(s) 14, 909
NmuCI GTSAC 2 cut(s) 634, 670
NsbI TGCGCA 1 cut(s) 138
NspI RCATGY 3 cut(s) 991, 1008, 1059
PaeR7I CTCGAG 2 cut(s) 210, 399
PciI ACATGT 1 cut(s) 987
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PctI GAATGC 1 cut(s) 114
PdmI GAANNNNTTC 3 cut(s) 594, 651, 719
PfeI GAWTC 3 cut(s) 652, 730, 1241
PkrI GCNGC 8 cut(s) 94, 97, 141, 228, 272, 688, 1061, 1142
PleI GAGTC 4 cut(s) 202, 410, 631, 798
PpsI GAGTC 4 cut(s) 202, 410, 631, 798
Ppu21I YACGTR 1 cut(s) 1181
PscI ACATGT 1 cut(s) 987
Psp124BI GAGCTC 1 cut(s) 192
PspN4I GGNNCC 2 cut(s) 14, 909
PspPI GGNCC 2 cut(s) 13, 1196
PspXI VCTCGAGB 1 cut(s) 399
PsrI GAACNNNNNNTAC 2 cut(s) 305, 337
PstI CTGCAG 1 cut(s) 128
PstNI CAGNNNCTG 1 cut(s) 145
PsuI RGATCY 2 cut(s) 180, 496
PvuII CAGCTG 3 cut(s) 229, 270, 998
RsaI GTAC 3 cut(s) 323, 446, 1035
RsaNI GTAC 3 cut(s) 322, 445, 1034
RseI CAYNNNNRTG 3 cut(s) 738, 867, 916
SacI GAGCTC 1 cut(s) 192
SaqAI TTAA 1 cut(s) 489
SatI GCNGC 8 cut(s) 93, 96, 140, 227, 271, 687, 1060, 1141
Sau3AI GATC 9 cut(s) 72, 81, 153, 180, 433, 483, 496, 838, 886
Sau96I GGNCC 2 cut(s) 13, 1196
ScaI AGTACT 1 cut(s) 1035
SchI GAGTC 4 cut(s) 202, 411, 631, 799
SduI GDGCHC 4 cut(s) 192, 477, 545, 1150
SfaNI GCATC 1 cut(s) 151
SfcI CTRYAG 3 cut(s) 124, 516, 681
Sfr274I CTCGAG 2 cut(s) 210, 399
SinI GGWCC 2 cut(s) 13, 1196
SlaI CTCGAG 2 cut(s) 210, 399
SmiMI CAYNNNNRTG 3 cut(s) 738, 867, 916
SmlI CTYRAG 5 cut(s) 176, 191, 210, 399, 575
SmoI CTYRAG 5 cut(s) 176, 191, 210, 399, 575
Sse9I AATT 7 cut(s) 131, 160, 348, 719, 960, 1013, 1212
SsiI CCGC 3 cut(s) 92, 95, 727
SspMI CTAG 4 cut(s) 386, 807, 893, 1031
SstI GAGCTC 1 cut(s) 192
TaaI ACNGT 5 cut(s) 517, 615, 682, 970, 1038
TaiI ACGT 3 cut(s) 442, 1088, 1183
TaqI TCGA 4 cut(s) 211, 400, 723, 1173
TasI AATT 7 cut(s) 131, 160, 348, 719, 960, 1013, 1212
TatI WGTACW 2 cut(s) 444, 1033
TauI GCSGC 2 cut(s) 95, 98
TfiI GAWTC 3 cut(s) 652, 730, 1241
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TseFI GTSAC 2 cut(s) 634, 670
TseI GCWGC 6 cut(s) 139, 226, 270, 686, 1059, 1140
Tsp45I GTSAC 2 cut(s) 634, 670
TspDTI ATGAA 8 cut(s) 360, 471, 603, 753, 786, 885, 1026, 1096
VneI GTGCAC 1 cut(s) 473
VpaK11BI GGWCC 2 cut(s) 13, 1196
XapI RAATTY 2 cut(s) 160, 719
XbaI TCTAGA 1 cut(s) 806
XceI RCATGY 3 cut(s) 991, 1008, 1059
XhoI CTCGAG 2 cut(s) 210, 399
XmnI GAANNNNTTC 3 cut(s) 594, 651, 719
XspI CTAG 4 cut(s) 386, 807, 893, 1031
ZrmI AGTACT 1 cut(s) 1035
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.