Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0005082

Physical Location & Seq

Genomic Coordinates Forward (+)

10313685 .. 10319290

Gene Structure 5606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1127400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGCGTCGTTCGGAGAAATGGCAAATGTGGCTCAGTTGACGGGCGTAGATGCGGTGAGGCTGATCGGAATGATTGTGAAGGCGGCGAGCACAGCGCGAATGCACAAGAAAAATTGCAGGCAATTTGCGCAGCATTTGAAGCTGATCGGGAACTTGTTGGAGCAACTGAAGATCTCGGAGCTTAAGAGGTATCCGGAGACGAGGGAGCCTCTGGAGCAGCTAGAGGAGGCTCTGAAAAGGTCTTACATTTTGGTCAGTAGCTGCCAAGACCGGAGCTACCTGTATTTGCTTGCAATGGGGTGGAACATTGTGTATCAGTTCAGGAAGGCTCAGAACGAAATCGATAGATACTTGAAGCTCGTCCCTCTGATTACTCTTGTGGACAACGCTCGAGTCAGGGAAAGATTGGAATACATTGAAATGGATCAATGTGAATACACATTGGATGAGGAGGACAGAAAGGTACAGGACGTGATCCTTAAACCAGACCCCTCAATACATGACACTGTAGTACTGAAGAAAACACTTTCATGCTCCTACCCAAAATTAGCTTTTAACGAGGCGCTCCAAAAGGAAAATGAAAAGCTTCAACTTGAACTACAACGGTCACAAGCTGCTTATGATGTGAGTCAATGTGAAGTAATTCAGCGTTTGCTAGAAGTGACAGAAACTGTTGCTGCAGAGTCTTCCCCTGAAAAAAATATTGAGAAAGTAGACCGCAGTCATTCAGATGCCAATAACGAGAAAGAACATTCATCTAATGAAAGCTATAAAAAAAATGAATCTCGCAAAACTTCAAGAAACACGTCTAGACATGATTTGTTGTCAACTAGAGGTTCACATCGAAATGAAGAATGGAATACTGATCTACTTGGATGTTGCTCAGAACCAGCTCTGTGTATAAAGACATTCTTCTACCCTTGCGGGACGTTTTCAAAAATTGCTTCTGCGGCAACTAACAGGCCTATGTCTTCAGCAGAAGCATGTAATGAATTGATGGCTTATTCGCTAGTATTGTCGTGCTGTTGTTATACATGCTGCATTAGAAGGAAGCTTCGCAAGACGTTGAATATCTCGGGGGGCTTTATTGATGACTTCCTTTCTCATTTTATGTGCTGCTGCTGTGCCCTTGTCCAAGAATGGCGAGAAGTTGAAATACGCGGGGTTCATTATGGTGCCGAGAAGACAAAAGTAAGCCCCCCAGCCTCACAGTACATGGAAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

409

Amino Acids

46.71

Weight (kDa)

6.76

Isoelectric Point (pI)

49.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCAfunc	PF19584	21 - 162	1.7e-84	MCAfunc domain
PLAC8	PF04749	286 - 383	9.2e-20	PLAC8 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35920 AT4G35920 AT4G35920 AT4G35920 AT4G35920
fragaria_vesca	FvH4_1g11310 FvH4_1g11310 FvH4_1g11310 FvH4_1g11310 FvH4_1g11310
malus_domestica	MD02G1127400.v1.1 MD15G1241400.v1.1
prunus_persica	Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1
pyrus_communis	pycom02g09950 pycom15g21290
rosa_chinensis	RchiOBHm_Chr2g0098791
rosa_laevigata	RLG00000016828
rosa_multiflora	Rmu_sc0002776.1_g000035
rosa_roxburghii	Rroxscaffold_2G00143700
rosa_rugosa	Rorug02G0074800
rosa_samantha	Rh2AG122600 Rh2BG126300 Rh2CG127200 Rh2DG128200
rosa_wichuraiana	Rw0G004270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	129
AccB1I	GGYRCC	1 cut(s)	1175
AccI	GTMKAC	1 cut(s)	714
AccII	CGCG	2 cut(s)	97, 1161
AccIII	TCCGGA	1 cut(s)	193
AciI	CCGC	6 cut(s)	53, 83, 718, 924, 950, 1161
AclWI	GGATC	2 cut(s)	432, 469
AcuI	CTGAAG	3 cut(s)	188, 536, 957
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	465, 513, 1214
AflII	CTTAAG	1 cut(s)	182
AflIII	ACRYGT	1 cut(s)	804
AgsI	TTSAA	9 cut(s)	139, 355, 419, 590, 596, 798, 936, 1069, 1154
AjiI	CACGTC	2 cut(s)	472, 807
Alw21I	GWGCWC	1 cut(s)	92
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	2 cut(s)	432, 469
AlwNI	CAGNNNCTG	2 cut(s)	261, 671
Ama87I	CYCGRG	2 cut(s)	390, 1075
Aor13HI	TCCGGA	1 cut(s)	193
AoxI	GGCC	1 cut(s)	962
ApeKI	GCWGC	8 cut(s)	130, 217, 261, 614, 677, 1038, 1116, 1119
Asp700I	GAANNNNTTC	2 cut(s)	585, 642
AspLEI	GCGC	3 cut(s)	97, 130, 565
AsuHPI	GGTGA	1 cut(s)	67
AvaI	CYCGRG	2 cut(s)	390, 1075
BaeGI	GKGCMC	1 cut(s)	1129
BanI	GGYRCC	1 cut(s)	1175
BarI	GAAGNNNNNNTAC	2 cut(s)	1140, 1172
BbsI	GAAGAC	3 cut(s)	678, 963, 1190
Bbv12I	GWGCWC	1 cut(s)	92
BbvI	GCAGC	8 cut(s)	142, 229, 248, 601, 664, 1025, 1103, 1106
BccI	CCATC	1 cut(s)	991
BciVI	GTATCC	1 cut(s)	201
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	5 cut(s)	221, 656, 810, 831, 1010
BfmI	CTRYAG	2 cut(s)	507, 678
BfoI	RGCGCY	1 cut(s)	566
BfrI	CTTAAG	1 cut(s)	182
BfuI	GTATCC	1 cut(s)	201
BglII	AGATCT	1 cut(s)	171
BmcAI	AGTACT	1 cut(s)	513
BmeT110I	CYCGRG	2 cut(s)	390, 1075
BmgBI	CACGTC	2 cut(s)	472, 807
BmiI	GGNNCC	2 cut(s)	207, 1177
BmsI	GCATC	2 cut(s)	40, 721
BoxI	GACNNNNGTC	1 cut(s)	720
BpiI	GAAGAC	3 cut(s)	678, 963, 1190
BplI	GAGNNNNNCTC	2 cut(s)	193, 225
BpmI	CTGGAG	1 cut(s)	233
Bsa29I	ATCGAT	1 cut(s)	342
BsaHI	GRCGYC	1 cut(s)	5
BsaWI	WCCGGW	2 cut(s)	193, 270
Bse3DI	GCAATG	1 cut(s)	300
BseAI	TCCGGA	1 cut(s)	193
BseCI	ATCGAT	1 cut(s)	342
BseGI	GGATG	2 cut(s)	451, 881
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	3 cut(s)	47, 344, 897
BseRI	GAGGAG	2 cut(s)	239, 464
BseSI	GKGCMC	1 cut(s)	1129
BseXI	GCAGC	8 cut(s)	142, 229, 248, 601, 664, 1025, 1103, 1106
BseYI	CCCAGC	1 cut(s)	1201
Bsh1236I	CGCG	2 cut(s)	97, 1161
BshFI	GGCC	1 cut(s)	964
BshNI	GGYRCC	1 cut(s)	1175
BshVI	ATCGAT	1 cut(s)	342
BsiHKAI	GWGCWC	1 cut(s)	92
BsiHKCI	CYCGRG	2 cut(s)	390, 1075
BsiSI	CCGG	2 cut(s)	194, 271
BslFI	GGGAC	2 cut(s)	347, 940
BsmAI	GTCTC	1 cut(s)	191
BsmBI	CGTCTC	1 cut(s)	191
BsmFI	GGGAC	2 cut(s)	347, 940
BsmI	GAATGC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	964
BsoBI	CYCGRG	2 cut(s)	390, 1075
Bsp1286I	GDGCHC	2 cut(s)	92, 1129
Bsp13I	TCCGGA	1 cut(s)	193
Bsp143I	GATC	6 cut(s)	63, 144, 171, 424, 474, 865
BspACI	CCGC	6 cut(s)	53, 83, 718, 924, 950, 1161
BspANI	GGCC	1 cut(s)	964
BspCNI	CTCAG	3 cut(s)	46, 343, 896
BspDI	ATCGAT	1 cut(s)	342
BspEI	TCCGGA	1 cut(s)	193
BspFNI	CGCG	2 cut(s)	97, 1161
BspLI	GGNNCC	2 cut(s)	207, 1177
BspMAI	CTGCAG	1 cut(s)	682
BspPI	GGATC	2 cut(s)	432, 469
BspT107I	GGYRCC	1 cut(s)	1175
BspTI	CTTAAG	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	300
BssMI	GATC	6 cut(s)	63, 144, 171, 424, 474, 865
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	4 cut(s)	508, 606, 673, 1212
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	182
BstC8I	GCNNGC	3 cut(s)	88, 119, 291
BstDEI	CTNAG	3 cut(s)	33, 330, 883
BstF5I	GGATG	2 cut(s)	451, 881
BstFNI	CGCG	2 cut(s)	97, 1161
BstH2I	RGCGCY	1 cut(s)	566
BstHHI	GCGC	3 cut(s)	97, 130, 565
BstKTI	GATC	6 cut(s)	66, 147, 174, 427, 477, 868
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	6 cut(s)	63, 144, 171, 424, 474, 865
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 92, 127, 139, 214, 950
BstNSI	RCATGY	2 cut(s)	987, 1038
BstPAI	GACNNNNGTC	1 cut(s)	720
BstSFI	CTRYAG	2 cut(s)	507, 678
BstSLI	GKGCMC	1 cut(s)	1129
BstUI	CGCG	2 cut(s)	97, 1161
BstV1I	GCAGC	8 cut(s)	142, 229, 248, 601, 664, 1025, 1103, 1106
BstV2I	GAAGAC	3 cut(s)	678, 963, 1190
BstX2I	RGATCY	1 cut(s)	171
BstYI	RGATCY	1 cut(s)	171
Bsu15I	ATCGAT	1 cut(s)	342
BsuI	GTATCC	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	964
BsuTUI	ATCGAT	1 cut(s)	342
BtrI	CACGTC	2 cut(s)	472, 807
BtsCI	GGATG	2 cut(s)	451, 881
BtsIMutI	CAGTG	1 cut(s)	504
Cac8I	GCNNGC	3 cut(s)	88, 119, 291
CaiI	CAGNNNCTG	2 cut(s)	261, 671
CfoI	GCGC	3 cut(s)	97, 130, 565
ClaI	ATCGAT	1 cut(s)	342
Csp6I	GTAC	3 cut(s)	464, 512, 1213
CviAII	CATG	6 cut(s)	500, 531, 815, 984, 1035, 1216
CviQI	GTAC	3 cut(s)	464, 512, 1213
DdeI	CTNAG	3 cut(s)	33, 330, 883
DpnI	GATC	6 cut(s)	65, 146, 173, 426, 476, 867
DpnII	GATC	6 cut(s)	63, 144, 171, 424, 474, 865
Eco147I	AGGCCT	1 cut(s)	964
Eco57I	CTGAAG	3 cut(s)	188, 536, 957
Eco88I	CYCGRG	2 cut(s)	390, 1075
Esp3I	CGTCTC	1 cut(s)	191
FaeI	CATG	6 cut(s)	503, 534, 818, 987, 1038, 1219
FalI	AAGNNNNNCTT	2 cut(s)	896, 928
FaqI	GGGAC	2 cut(s)	347, 940
FatI	CATG	6 cut(s)	499, 530, 814, 983, 1034, 1215
FauI	CCCGC	2 cut(s)	917, 1154
FblI	GTMKAC	1 cut(s)	714
FokI	GGATG	2 cut(s)	458, 888
FspBI	CTAG	5 cut(s)	221, 656, 810, 831, 1010
FspI	TGCGCA	1 cut(s)	129
GlaI	GCGC	3 cut(s)	96, 129, 564
GsaI	CCCAGC	1 cut(s)	1205
GsuI	CTGGAG	1 cut(s)	233
HaeII	RGCGCY	1 cut(s)	566
HaeIII	GGCC	1 cut(s)	964
HapII	CCGG	2 cut(s)	194, 271
HhaI	GCGC	3 cut(s)	97, 130, 565
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	6 cut(s)	503, 534, 818, 987, 1038, 1219
Hin6I	GCGC	3 cut(s)	95, 128, 563
HinP1I	GCGC	3 cut(s)	95, 128, 563
HincII	GTYRAC	2 cut(s)	39, 828
HindII	GTYRAC	2 cut(s)	39, 828
HindIII	AAGCTT	2 cut(s)	584, 1052
HinfI	GANTC	4 cut(s)	393, 628, 683, 782
HpaII	CCGG	2 cut(s)	194, 271
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	5 cut(s)	39, 382, 715, 828, 839
Hpy188I	TCNGA	8 cut(s)	14, 68, 178, 234, 333, 369, 730, 886
Hpy188III	TCNNGA	6 cut(s)	148, 194, 212, 322, 798, 810
Hpy8I	GTNNAC	5 cut(s)	39, 382, 715, 828, 839
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	73, 319, 1041
HpyCH4III	ACNGT	4 cut(s)	508, 606, 673, 1212
HpyCH4IV	ACGT	4 cut(s)	471, 806, 929, 1064
HpyCH4V	TGCA	5 cut(s)	103, 117, 293, 680, 1041
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 92, 127, 139, 214, 950
HpyF3I	CTNAG	3 cut(s)	33, 330, 883
HpySE526I	ACGT	4 cut(s)	471, 806, 929, 1064
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	6 cut(s)	503, 534, 818, 987, 1038, 1219
HspAI	GCGC	3 cut(s)	95, 128, 563
Kpn2I	TCCGGA	1 cut(s)	193
Kzo9I	GATC	6 cut(s)	63, 144, 171, 424, 474, 865
LmnI	GCTCC	7 cut(s)	160, 178, 205, 214, 273, 539, 570
Lsp1109I	GCAGC	8 cut(s)	142, 229, 248, 601, 664, 1025, 1103, 1106
LweI	GCATC	2 cut(s)	40, 721
MaeI	CTAG	5 cut(s)	221, 656, 810, 831, 1010
MaeII	ACGT	4 cut(s)	471, 806, 929, 1064
MaeIII	GTNAC	2 cut(s)	606, 661
MalI	GATC	6 cut(s)	65, 146, 173, 426, 476, 867
MboI	GATC	6 cut(s)	63, 144, 171, 424, 474, 865
MboII	GAAGA	7 cut(s)	181, 529, 678, 863, 904, 963, 1195
MflI	RGATCY	1 cut(s)	171
MhlI	GDGCHC	2 cut(s)	92, 1129
MluCI	AATT	6 cut(s)	112, 122, 545, 642, 939, 992
MlyI	GAGTC	3 cut(s)	402, 637, 692
MmeI	TCCRAC	1 cut(s)	138
MroI	TCCGGA	1 cut(s)	193
MroXI	GAANNNNTTC	2 cut(s)	585, 642
MseI	TTAA	3 cut(s)	183, 480, 555
MslI	CAYNNNNRTG	5 cut(s)	419, 529, 729, 846, 1173
MspCI	CTTAAG	1 cut(s)	182
MspI	CCGG	2 cut(s)	194, 271
Mva1269I	GAATGC	1 cut(s)	105
MvnI	CGCG	2 cut(s)	97, 1161
MwoI	GCNNNNNNNGC	6 cut(s)	29, 92, 127, 139, 214, 950
NdeII	GATC	6 cut(s)	63, 144, 171, 424, 474, 865
NlaIII	CATG	6 cut(s)	503, 534, 818, 987, 1038, 1219
NlaIV	GGNNCC	2 cut(s)	207, 1177
NmeAIII	GCCGAG	1 cut(s)	1204
NmuCI	GTSAC	2 cut(s)	606, 661
NsbI	TGCGCA	1 cut(s)	129
NspI	RCATGY	2 cut(s)	987, 1038
PaeR7I	CTCGAG	1 cut(s)	390
PceI	AGGCCT	1 cut(s)	964
PctI	GAATGC	1 cut(s)	105
PdmI	GAANNNNTTC	2 cut(s)	585, 642
PfeI	GAWTC	1 cut(s)	782
PleI	GAGTC	3 cut(s)	401, 636, 691
PpsI	GAGTC	3 cut(s)	401, 636, 691
PshAI	GACNNNNGTC	1 cut(s)	720
PspFI	CCCAGC	1 cut(s)	1201
PspN4I	GGNNCC	2 cut(s)	207, 1177
PspXI	VCTCGAGB	1 cut(s)	390
PstI	CTGCAG	1 cut(s)	682
PstNI	CAGNNNCTG	2 cut(s)	261, 671
PsuI	RGATCY	1 cut(s)	171
RsaI	GTAC	3 cut(s)	465, 513, 1214
RsaNI	GTAC	3 cut(s)	464, 512, 1213
RseI	CAYNNNNRTG	5 cut(s)	419, 529, 729, 846, 1173
SaqAI	TTAA	3 cut(s)	183, 480, 555
Sau3AI	GATC	6 cut(s)	63, 144, 171, 424, 474, 865
ScaI	AGTACT	1 cut(s)	513
SchI	GAGTC	3 cut(s)	402, 637, 692
SduI	GDGCHC	2 cut(s)	92, 1129
SfaNI	GCATC	2 cut(s)	40, 721
SfcI	CTRYAG	2 cut(s)	507, 678
Sfr274I	CTCGAG	1 cut(s)	390
SlaI	CTCGAG	1 cut(s)	390
SmiMI	CAYNNNNRTG	5 cut(s)	419, 529, 729, 846, 1173
SmlI	CTYRAG	2 cut(s)	182, 390
SmoI	CTYRAG	2 cut(s)	182, 390
Sse9I	AATT	6 cut(s)	112, 122, 545, 642, 939, 992
SseBI	AGGCCT	1 cut(s)	964
SsiI	CCGC	6 cut(s)	53, 83, 718, 924, 950, 1161
SspI	AATATT	1 cut(s)	703
SspMI	CTAG	5 cut(s)	221, 656, 810, 831, 1010
StuI	AGGCCT	1 cut(s)	964
TaaI	ACNGT	4 cut(s)	508, 606, 673, 1212
TaiI	ACGT	4 cut(s)	474, 809, 932, 1067
TaqI	TCGA	3 cut(s)	342, 391, 844
TasI	AATT	6 cut(s)	112, 122, 545, 642, 939, 992
TatI	WGTACW	2 cut(s)	511, 1212
TauI	GCSGC	2 cut(s)	86, 953
TfiI	GAWTC	1 cut(s)	782
Tru1I	TTAA	3 cut(s)	183, 480, 555
Tru9I	TTAA	3 cut(s)	183, 480, 555
TscAI	CASTG	1 cut(s)	511
TseFI	GTSAC	2 cut(s)	606, 661
TseI	GCWGC	8 cut(s)	130, 217, 261, 614, 677, 1038, 1116, 1119
Tsp45I	GTSAC	2 cut(s)	606, 661
TspDTI	ATGAA	8 cut(s)	519, 594, 744, 777, 795, 864, 1005, 1157
TspRI	CASTG	1 cut(s)	511
Vha464I	CTTAAG	1 cut(s)	182
XbaI	TCTAGA	1 cut(s)	809
XceI	RCATGY	2 cut(s)	987, 1038
XhoI	CTCGAG	1 cut(s)	390
XmiI	GTMKAC	1 cut(s)	714
XmnI	GAANNNNTTC	2 cut(s)	585, 642
XspI	CTAG	5 cut(s)	221, 656, 810, 831, 1010
ZrmI	AGTACT	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.