Rroxscaffold_2G00143700

Protein MID1-COMPLEMENTING ACTIVITY

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
81667995 .. 81672855
4861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00143700.1

Sequence Viewer

Length: 1251 bp
ATGGCGTCATGGGACCACTTCGGGGATATTGCCAATGTGGCTCAGTTGACGGGGCTGGACGCCGTGAAGCTGATCGGAATGATCGTGAAGGCGGCGGCCACGGCGAGAATGCACAAGAAGAACTGCAGGCAATTTGCGCAGCATCTGAAGCTGATTGGGAATTTATTGGAGCAACTCAAGATCTCGGAGCTCAAGAGGTATCCGGAGACTCGAGAGCCGTTGGAGCAGCTGGAGGAAGCTCTGAGGAGGTCATACATTTTGGTCAACAGCTGCCAGGACCGGAGCTATTTGTATCTGCTTGCAATGGGATGGAACATCGTGTACCAGTTCAGGAAGGCTCAGAATGAAATTGATAGATACTTGAAGCTTGTGCCTTTGATTACTCTAGTGGATAATGCTCGAGTCAGGGAGAGACTGGAAGACATTGAACTGGATCAACGTGAGTACACATTGGATGAAGAAGACAGGAAGGTGCACGATGTGATCCTTAAACCAGATCCCTGTAAAAATGATACTGTAGTGTTGAAGAAAACGCTTTCGTGCTCCTATCCAAACTTGCCTTTTTGCAAGGCACTTGAGAAGGAAAATGAAAAACTTCAACTTGAACTACAACGGTCGCAATCTACTTATGATGTGTCTCAATGTGAAGTGATTCAGCGTTTGATAGAAGTGACTGAAACTGTAGCTGCAAACTCATCCCCTGATAAAAATCAGAAGAAATTGGAGCGGAATCATTCAGATGTCAATAGTGCGAAAGAACATTCATCTGATGGAAAAAACTACAAGAAGAGTCAACCTCACATTTCTAGAAACACATCTTCAGTCTCTTCTGGACATGATCTGTTGTCAAATAGAGGTTCACATTACCATGAAGAATGGAATACTGATCTTCTAGGTTGTTGCTCAGAGCCATCTTTGTGTTTCAAGACATTCTTCTATCCTTGTGGGACATTTTCAAAAATTGCTACTGTGGCAACTAACAGGCACATGTCTTCAGCTGAAGCATGTAATGAATTAATGGCGTATTCGCTAGTACTGTCGTGCTGTTGCTACACATGCTGCATTAGAAGGAAACTTCGCAAGACGTTGAATATCTCAGCTTCATTGATGATTTCCTTTCACATTTTATGTGTTGCTGCTGTGCCCTTGTCCAAGAATGGCGAGAAGTCGAAATACGTGGGATGGCATATGGTCCTGAGAAGACAAAAATTAGCCCTCCACCCTCACAATACATGGAATCCTAAGCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

416

Amino Acids

47.74

Weight (kDa)

8.84

Isoelectric Point (pI)

49.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MCAfunc PF19584 24 - 165 1.7e-84 MCAfunc domain
PLAC8 PF04749 293 - 372 1.7e-10 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 138
AccBSI CCGCTC 1 cut(s) 727
AccIII TCCGGA 1 cut(s) 202
AciI CCGC 3 cut(s) 92, 95, 727
AclWI GGATC 3 cut(s) 441, 478, 491
AcoI YGGCCR 1 cut(s) 96
AcsI RAATTY 1 cut(s) 160
AcuI CTGAAG 4 cut(s) 167, 804, 978, 1020
AcyI GRCGYC 2 cut(s) 5, 60
AdeI CACNNNGTG 1 cut(s) 481
AfaI GTAC 3 cut(s) 323, 446, 1035
AfiI CCNNNNNNNGG 1 cut(s) 22
AflIII ACRYGT 1 cut(s) 987
AgsI TTSAA 8 cut(s) 364, 428, 526, 599, 605, 925, 957, 1090
AjnI CCWGG 1 cut(s) 273
Alw21I GWGCWC 3 cut(s) 192, 477, 545
Alw26I GTCTC 4 cut(s) 200, 406, 642, 829
Alw44I GTGCAC 1 cut(s) 473
AlwI GGATC 3 cut(s) 441, 478, 491
AlwNI CAGNNNCTG 1 cut(s) 145
Ama87I CYCGRG 2 cut(s) 210, 399
Aor13HI TCCGGA 1 cut(s) 202
AoxI GGCC 1 cut(s) 96
ApaLI GTGCAC 1 cut(s) 473
ApeKI GCWGC 6 cut(s) 139, 226, 270, 686, 1059, 1136
ApoI RAATTY 1 cut(s) 160
AseI ATTAAT 1 cut(s) 1016
Asp700I GAANNNNTTC 2 cut(s) 594, 651
AspLEI GCGC 1 cut(s) 139
AspS9I GGNCC 3 cut(s) 13, 277, 1192
AvaI CYCGRG 2 cut(s) 210, 399
AvaII GGWCC 3 cut(s) 13, 277, 1192
BaeGI GKGCMC 2 cut(s) 477, 1146
BaeI ACNNNNGTAYC 2 cut(s) 504, 537
BanII GRGCYC 1 cut(s) 192
BarI GAAGNNNNNNTAC 2 cut(s) 1157, 1189
BbsI GAAGAC 4 cut(s) 426, 468, 984, 1207
Bbv12I GWGCWC 3 cut(s) 192, 477, 545
BbvI GCAGC 6 cut(s) 151, 238, 257, 673, 1046, 1123
BccI CCATC 4 cut(s) 303, 764, 919, 1176
BceAI ACGGC 3 cut(s) 47, 117, 202
BciT130I CCWGG 1 cut(s) 275
BciVI GTATCC 1 cut(s) 210
BcoDI GTCTC 4 cut(s) 200, 406, 642, 829
BfaI CTAG 4 cut(s) 386, 807, 893, 1031
BfmI CTRYAG 3 cut(s) 124, 516, 681
BfuI GTATCC 1 cut(s) 210
BglI GCCNNNNNGGC 1 cut(s) 38
BglII AGATCT 1 cut(s) 180
BisI GCNGC 8 cut(s) 93, 96, 140, 227, 271, 687, 1060, 1137
BlsI GCNGC 8 cut(s) 94, 97, 141, 228, 272, 688, 1061, 1138
BmcAI AGTACT 1 cut(s) 1035
Bme1390I CCNGG 1 cut(s) 275
Bme18I GGWCC 3 cut(s) 13, 277, 1192
BmeT110I CYCGRG 2 cut(s) 210, 399
BmgT120I GGNCC 3 cut(s) 13, 277, 1192
BmiI GGNNCC 1 cut(s) 14
BmrFI CCNGG 1 cut(s) 275
BmsI GCATC 1 cut(s) 151
BpiI GAAGAC 4 cut(s) 426, 468, 984, 1207
BplI GAGNNNNNCTC 2 cut(s) 781, 813
BpmI CTGGAG 1 cut(s) 251
Bpu10I CCTNAGC 1 cut(s) 1242
BpuEI CTTGAG 3 cut(s) 161, 176, 596
BsaAI YACGTR 1 cut(s) 1177
BsaBI GATNNNNATC 1 cut(s) 708
BsaHI GRCGYC 2 cut(s) 5, 60
BsaJI CCNNGG 1 cut(s) 99
BsaWI WCCGGW 2 cut(s) 202, 279
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse1I ACTGG 3 cut(s) 325, 420, 435
Bse3DI GCAATG 1 cut(s) 309
Bse8I GATNNNNATC 1 cut(s) 708
BseAI TCCGGA 1 cut(s) 202
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 4 cut(s) 314, 460, 695, 1187
BseJI GATNNNNATC 1 cut(s) 708
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMI GCAATG 1 cut(s) 309
BseMII CTCAG 6 cut(s) 56, 233, 353, 918, 1110, 1187
BseNI ACTGG 3 cut(s) 325, 420, 435
BseRI GAGGAG 1 cut(s) 259
BseSI GKGCMC 2 cut(s) 477, 1146
BseXI GCAGC 6 cut(s) 151, 238, 257, 673, 1046, 1123
Bsh1285I CGRYCG 1 cut(s) 617
BshFI GGCC 1 cut(s) 98
BsiEI CGRYCG 1 cut(s) 617
BsiHKAI GWGCWC 3 cut(s) 192, 477, 545
BsiHKCI CYCGRG 2 cut(s) 210, 399
BsiSI CCGG 2 cut(s) 203, 280
BslFI GGGAC 2 cut(s) 26, 961
BslI CCNNNNNNNGG 1 cut(s) 22
BsmAI GTCTC 4 cut(s) 200, 406, 642, 829
BsmFI GGGAC 2 cut(s) 26, 961
BsmI GAATGC 1 cut(s) 114
BsnI GGCC 1 cut(s) 98
BsoBI CYCGRG 2 cut(s) 210, 399
Bsp1286I GDGCHC 4 cut(s) 192, 477, 545, 1146
Bsp13I TCCGGA 1 cut(s) 202
Bsp143I GATC 8 cut(s) 72, 81, 180, 433, 483, 496, 838, 886
BspACI CCGC 3 cut(s) 92, 95, 727
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 6 cut(s) 55, 234, 352, 917, 1109, 1188
BspEI TCCGGA 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 14
BspMAI CTGCAG 1 cut(s) 128
BspPI GGATC 3 cut(s) 441, 478, 491
BsrBI CCGCTC 1 cut(s) 727
BsrDI GCAATG 1 cut(s) 309
BsrI ACTGG 3 cut(s) 325, 420, 435
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 8 cut(s) 72, 81, 180, 433, 483, 496, 838, 886
BssNI GRCGYC 2 cut(s) 5, 60
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 5 cut(s) 517, 615, 682, 970, 1038
Bst6I CTCTTC 2 cut(s) 782, 832
BstACI GRCGYC 2 cut(s) 5, 60
BstBAI YACGTR 1 cut(s) 1177
BstC8I GCNNGC 2 cut(s) 128, 300
BstDEI CTNAG 7 cut(s) 42, 242, 339, 904, 1096, 1196, 1242
BstDSI CCRYGG 1 cut(s) 99
BstF5I GGATG 4 cut(s) 314, 460, 695, 1187
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 8 cut(s) 75, 84, 183, 436, 486, 499, 841, 889
BstMAI GTCTC 4 cut(s) 200, 406, 642, 829
BstMBI GATC 8 cut(s) 72, 81, 180, 433, 483, 496, 838, 886
BstMCI CGRYCG 1 cut(s) 617
BstMWI GCNNNNNNNGC 7 cut(s) 38, 101, 136, 148, 223, 971, 1056
BstNI CCWGG 1 cut(s) 275
BstNSI RCATGY 3 cut(s) 991, 1008, 1059
BstSCI CCNGG 1 cut(s) 273
BstSFI CTRYAG 3 cut(s) 124, 516, 681
BstSLI GKGCMC 2 cut(s) 477, 1146
BstV1I GCAGC 6 cut(s) 151, 238, 257, 673, 1046, 1123
BstV2I GAAGAC 4 cut(s) 426, 468, 984, 1207
BstX2I RGATCY 2 cut(s) 180, 496
BstYI RGATCY 2 cut(s) 180, 496
BsuI GTATCC 1 cut(s) 210
BsuRI GGCC 1 cut(s) 98
BtgI CCRYGG 1 cut(s) 99
BtsCI GGATG 4 cut(s) 314, 460, 695, 1187
Cac8I GCNNGC 2 cut(s) 128, 300
CaiI CAGNNNCTG 1 cut(s) 145
CfoI GCGC 1 cut(s) 139
Cfr13I GGNCC 3 cut(s) 13, 277, 1192
CseI GACGC 1 cut(s) 68
Csp6I GTAC 3 cut(s) 322, 445, 1034
CviAII CATG 7 cut(s) 9, 836, 869, 988, 1005, 1056, 1233
CviQI GTAC 3 cut(s) 322, 445, 1034
DdeI CTNAG 7 cut(s) 42, 242, 339, 904, 1096, 1196, 1242
DpnI GATC 8 cut(s) 74, 83, 182, 435, 485, 498, 840, 888
DpnII GATC 8 cut(s) 72, 81, 180, 433, 483, 496, 838, 886
DraIII CACNNNGTG 1 cut(s) 481
EaeI YGGCCR 1 cut(s) 96
Eam1104I CTCTTC 2 cut(s) 782, 832
EarI CTCTTC 2 cut(s) 782, 832
Ecl136II GAGCTC 1 cut(s) 190
Eco24I GRGCYC 1 cut(s) 192
Eco47I GGWCC 3 cut(s) 13, 277, 1192
Eco53kI GAGCTC 1 cut(s) 190
Eco57I CTGAAG 4 cut(s) 167, 804, 978, 1020
Eco88I CYCGRG 2 cut(s) 210, 399
EcoICRI GAGCTC 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 192
FaeI CATG 7 cut(s) 12, 839, 872, 991, 1008, 1059, 1236
FalI AAGNNNNNCTT 2 cut(s) 917, 949
FaqI GGGAC 2 cut(s) 26, 961
FatI CATG 7 cut(s) 8, 835, 868, 987, 1004, 1055, 1232
FauNDI CATATG 1 cut(s) 1188
Fnu4HI GCNGC 8 cut(s) 93, 96, 140, 227, 271, 687, 1060, 1137
FokI GGATG 4 cut(s) 321, 467, 682, 1194
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 8 cut(s) 93, 96, 140, 227, 271, 687, 1060, 1137
FspBI CTAG 4 cut(s) 386, 807, 893, 1031
FspI TGCGCA 1 cut(s) 138
GlaI GCGC 1 cut(s) 138
GluI GCNGC 8 cut(s) 93, 96, 140, 227, 271, 687, 1060, 1137
GsuI CTGGAG 1 cut(s) 251
HaeIII GGCC 1 cut(s) 98
HapII CCGG 2 cut(s) 203, 280
HgaI GACGC 1 cut(s) 68
HhaI GCGC 1 cut(s) 139
Hin1I GRCGYC 2 cut(s) 5, 60
Hin1II CATG 7 cut(s) 12, 839, 872, 991, 1008, 1059, 1236
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HincII GTYRAC 3 cut(s) 48, 265, 794
HindII GTYRAC 3 cut(s) 48, 265, 794
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 6 cut(s) 208, 402, 652, 730, 790, 1237
HpaII CCGG 2 cut(s) 203, 280
Hpy166II GTNNAC 7 cut(s) 48, 265, 322, 447, 475, 794, 860
Hpy188I TCNGA 9 cut(s) 77, 147, 187, 243, 342, 714, 739, 769, 907
Hpy8I GTNNAC 7 cut(s) 48, 265, 322, 447, 475, 794, 860
HpyAV CCTTC 5 cut(s) 82, 328, 463, 574, 1062
HpyCH4III ACNGT 5 cut(s) 517, 615, 682, 970, 1038
HpyCH4IV ACGT 3 cut(s) 439, 1085, 1176
HpyCH4V TGCA 7 cut(s) 112, 126, 302, 475, 567, 689, 1062
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 101, 136, 148, 223, 971, 1056
HpyF3I CTNAG 7 cut(s) 42, 242, 339, 904, 1096, 1196, 1242
HpySE526I ACGT 3 cut(s) 439, 1085, 1176
Hsp92I GRCGYC 2 cut(s) 5, 60
Hsp92II CATG 7 cut(s) 12, 839, 872, 991, 1008, 1059, 1236
HspAI GCGC 1 cut(s) 137
Kpn2I TCCGGA 1 cut(s) 202
Kzo9I GATC 8 cut(s) 72, 81, 180, 433, 483, 496, 838, 886
LmnI GCTCC 6 cut(s) 169, 187, 223, 282, 548, 724
Lsp1109I GCAGC 6 cut(s) 151, 238, 257, 673, 1046, 1123
LweI GCATC 1 cut(s) 151
MaeI CTAG 4 cut(s) 386, 807, 893, 1031
MaeII ACGT 3 cut(s) 439, 1085, 1176
MaeIII GTNAC 1 cut(s) 670
MalI GATC 8 cut(s) 74, 83, 182, 435, 485, 498, 840, 888
MbiI CCGCTC 1 cut(s) 727
MboI GATC 8 cut(s) 72, 81, 180, 433, 483, 496, 838, 886
MflI RGATCY 2 cut(s) 180, 496
MhlI GDGCHC 4 cut(s) 192, 477, 545, 1146
MluCI AATT 7 cut(s) 131, 160, 348, 719, 960, 1013, 1208
MlyI GAGTC 3 cut(s) 202, 411, 799
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 8 cut(s) 189, 226, 237, 240, 807, 848, 1226, 1233
MroI TCCGGA 1 cut(s) 202
MroXI GAANNNNTTC 2 cut(s) 594, 651
MseI TTAA 2 cut(s) 489, 1016
MslI CAYNNNNRTG 3 cut(s) 738, 867, 916
MspA1I CMGCKG 3 cut(s) 229, 270, 998
MspI CCGG 2 cut(s) 203, 280
MspR9I CCNGG 1 cut(s) 275
Mva1269I GAATGC 1 cut(s) 114
MvaI CCWGG 1 cut(s) 275
MwoI GCNNNNNNNGC 7 cut(s) 38, 101, 136, 148, 223, 971, 1056
NdeI CATATG 1 cut(s) 1188
NdeII GATC 8 cut(s) 72, 81, 180, 433, 483, 496, 838, 886
NlaIII CATG 7 cut(s) 12, 839, 872, 991, 1008, 1059, 1236
NlaIV GGNNCC 1 cut(s) 14
NmuCI GTSAC 1 cut(s) 670
NsbI TGCGCA 1 cut(s) 138
NspI RCATGY 3 cut(s) 991, 1008, 1059
PaeR7I CTCGAG 2 cut(s) 210, 399
PciI ACATGT 1 cut(s) 987
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PctI GAATGC 1 cut(s) 114
PdmI GAANNNNTTC 2 cut(s) 594, 651
PfeI GAWTC 3 cut(s) 652, 730, 1237
PkrI GCNGC 8 cut(s) 94, 97, 141, 228, 272, 688, 1061, 1138
PleI GAGTC 3 cut(s) 202, 410, 798
PpsI GAGTC 3 cut(s) 202, 410, 798
Ppu21I YACGTR 1 cut(s) 1177
PscI ACATGT 1 cut(s) 987
PshBI ATTAAT 1 cut(s) 1016
Psp124BI GAGCTC 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 273
PspN4I GGNNCC 1 cut(s) 14
PspPI GGNCC 3 cut(s) 13, 277, 1192
PspXI VCTCGAGB 1 cut(s) 399
PsrI GAACNNNNNNTAC 2 cut(s) 305, 337
PstI CTGCAG 1 cut(s) 128
PstNI CAGNNNCTG 1 cut(s) 145
PsuI RGATCY 2 cut(s) 180, 496
PvuII CAGCTG 3 cut(s) 229, 270, 998
RsaI GTAC 3 cut(s) 323, 446, 1035
RsaNI GTAC 3 cut(s) 322, 445, 1034
RseI CAYNNNNRTG 3 cut(s) 738, 867, 916
SacI GAGCTC 1 cut(s) 192
SaqAI TTAA 2 cut(s) 489, 1016
SatI GCNGC 8 cut(s) 93, 96, 140, 227, 271, 687, 1060, 1137
Sau3AI GATC 8 cut(s) 72, 81, 180, 433, 483, 496, 838, 886
Sau96I GGNCC 3 cut(s) 13, 277, 1192
ScaI AGTACT 1 cut(s) 1035
SchI GAGTC 3 cut(s) 202, 411, 799
ScrFI CCNGG 1 cut(s) 275
SduI GDGCHC 4 cut(s) 192, 477, 545, 1146
SfaNI GCATC 1 cut(s) 151
SfcI CTRYAG 3 cut(s) 124, 516, 681
Sfr274I CTCGAG 2 cut(s) 210, 399
SinI GGWCC 3 cut(s) 13, 277, 1192
SlaI CTCGAG 2 cut(s) 210, 399
SmiMI CAYNNNNRTG 3 cut(s) 738, 867, 916
SmlI CTYRAG 5 cut(s) 176, 191, 210, 399, 575
SmoI CTYRAG 5 cut(s) 176, 191, 210, 399, 575
Sse9I AATT 7 cut(s) 131, 160, 348, 719, 960, 1013, 1208
SsiI CCGC 3 cut(s) 92, 95, 727
SspMI CTAG 4 cut(s) 386, 807, 893, 1031
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 273
TaaI ACNGT 5 cut(s) 517, 615, 682, 970, 1038
TaiI ACGT 3 cut(s) 442, 1088, 1179
TaqI TCGA 3 cut(s) 211, 400, 1169
TasI AATT 7 cut(s) 131, 160, 348, 719, 960, 1013, 1208
TatI WGTACW 2 cut(s) 444, 1033
TauI GCSGC 2 cut(s) 95, 98
TfiI GAWTC 3 cut(s) 652, 730, 1237
Tru1I TTAA 2 cut(s) 489, 1016
Tru9I TTAA 2 cut(s) 489, 1016
TseFI GTSAC 1 cut(s) 670
TseI GCWGC 6 cut(s) 139, 226, 270, 686, 1059, 1136
Tsp45I GTSAC 1 cut(s) 670
TspDTI ATGAA 7 cut(s) 360, 471, 603, 753, 885, 1026, 1092
VneI GTGCAC 1 cut(s) 473
VpaK11BI GGWCC 3 cut(s) 13, 277, 1192
VspI ATTAAT 1 cut(s) 1016
XapI RAATTY 1 cut(s) 160
XbaI TCTAGA 1 cut(s) 806
XceI RCATGY 3 cut(s) 991, 1008, 1059
XhoI CTCGAG 2 cut(s) 210, 399
XmnI GAANNNNTTC 2 cut(s) 594, 651
XspI CTAG 4 cut(s) 386, 807, 893, 1031
ZrmI AGTACT 1 cut(s) 1035
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.