RLG00000016828

Protein MID1-COMPLEMENTING ACTIVITY

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
10403677 .. 10408002
4326 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016828

Sequence Viewer

Length: 1248 bp
ATGGCGTCATGGGACCACTTCGGGGAGGTTGCCAATGTGGCTCAGTTGACAGGGGTCGACGCCGTGAAGCTGATCGGAATGATAGTCAAGGCGGCGGCCACGGCGAGAATGCACAAGAAGAACTGCAGGCAATTTGCGCAGCATCTGAAGCTGATCGGGAATTTATTGGAGCAACTCAAGATCTCGGAGCTCAAGAGGTATTCGGAGACTCGAGAGCCGTTGGAGCAGCTGGAGGAGGCTCTGAGGAGGTCATACATTTTGGTCAACAGCTGCCAGGACCGGAGCTATTTGTATCTGCTTGCAATGGGATGGAACATCGTGTACCAGTTCAGGAAGGCTCAGAATGAAATTGATAGATACTTGAAGCTTGTGCCTTTGATTACTCTAGTGGATAATGCTCGAGTCAGGGAGAGACTGGAAGACATTGAACTGGATCAACGTGAGTACACATTGGATGAAGAGGACAGGAAGGTGCATGATGTGATCCTTAAACCAGATCCCTGTAAAAATGATACTATAGTGTTGAAGAAAACGCTTTCGTGCTCCTATCCAAACTTGCCTTTTTGCAAGGCACTTGAGAAGGAAAATGAAAAACTTCAACTTGAACTACAACGGTCGCAATCTACTTATGATGTGACTCAATGTGAAGTGATTCAGCGTTTGATAGAAGTGACTGAAACTGTAGCTGCAAACTCTTCCCCTGAAAAAAATCAGAAGAAATTAGAGCGGAATCATTCAGATGTCAATAGTGCGAAAGAACACTCATCTGATGAAAAAAACTACAAGAAGAGTCAAACTCACATTTCTAGAAACACATCTTCAGTCTCTTCTGGACATGATCTGTTGTCAAATAGAGGTTCACATTACCATGAAGAATGGAATACTGATCTTCTAGGTTGTTGCTCAGAGCCATCTTTGTGTTTCAAGACATTCTTCTATCCTTGTGGGACATTTTCAAAAATTGCTACTGTGGCAACTAACAGGCACATGTCTTCAGCTGAAGCATGTAATGAATTGATGGCGTATTCGCTAGTACTGTCGTGCTGTTGCTACACATGCTGCATTAGAAGGAAACTTCGCAAGACGTTGAATATCTCGGGAGGCTTCATTGATGATTTCCTTTCACATTTTATGTGTTGCTGCTGTGCCCTCGTCCAAGAATGGCGAGAAGTTGAAATACGTGGGATGGCATATGGTCCCGAGAAGACAAAAATTAGCCCTCCACCCTCACAATACATGGAATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

416

Amino Acids

47.66

Weight (kDa)

7.12

Isoelectric Point (pI)

47.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MCAfunc PF19584 24 - 165 3.9e-84 MCAfunc domain
PLAC8 PF04749 293 - 390 6.5e-20 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 138
AccBSI CCGCTC 1 cut(s) 727
AccI GTMKAC 1 cut(s) 57
AciI CCGC 3 cut(s) 92, 95, 727
AclWI GGATC 3 cut(s) 441, 478, 491
AcoI YGGCCR 1 cut(s) 96
AcsI RAATTY 1 cut(s) 160
AcuI CTGAAG 4 cut(s) 167, 804, 978, 1020
AcyI GRCGYC 2 cut(s) 5, 60
AfaI GTAC 3 cut(s) 323, 446, 1035
AfiI CCNNNNNNNGG 1 cut(s) 22
AflIII ACRYGT 1 cut(s) 987
AgsI TTSAA 9 cut(s) 364, 428, 526, 599, 605, 925, 957, 1090, 1175
AjnI CCWGG 1 cut(s) 273
AluBI AGCT 9 cut(s) 70, 151, 190, 229, 270, 285, 367, 686, 998
AluI AGCT 9 cut(s) 70, 151, 190, 229, 270, 285, 367, 686, 998
Alw21I GWGCWC 2 cut(s) 192, 545
Alw26I GTCTC 3 cut(s) 200, 406, 829
AlwI GGATC 3 cut(s) 441, 478, 491
AlwNI CAGNNNCTG 1 cut(s) 145
Ama87I CYCGRG 4 cut(s) 210, 399, 1096, 1199
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 6 cut(s) 139, 226, 270, 686, 1059, 1140
ApoI RAATTY 1 cut(s) 160
Asp700I GAANNNNTTC 2 cut(s) 594, 651
AspLEI GCGC 1 cut(s) 139
AspS9I GGNCC 3 cut(s) 13, 277, 1196
AvaI CYCGRG 4 cut(s) 210, 399, 1096, 1199
AvaII GGWCC 3 cut(s) 13, 277, 1196
BaeGI GKGCMC 1 cut(s) 1150
BaeI ACNNNNGTAYC 2 cut(s) 504, 537
BanII GRGCYC 1 cut(s) 192
BarI GAAGNNNNNNTAC 2 cut(s) 1161, 1193
BbsI GAAGAC 3 cut(s) 426, 984, 1211
Bbv12I GWGCWC 2 cut(s) 192, 545
BbvI GCAGC 6 cut(s) 151, 238, 257, 673, 1046, 1127
BccI CCATC 4 cut(s) 303, 919, 1012, 1180
BceAI ACGGC 3 cut(s) 47, 117, 202
BciT130I CCWGG 1 cut(s) 275
BcoDI GTCTC 3 cut(s) 200, 406, 829
BfaI CTAG 4 cut(s) 386, 807, 893, 1031
BfmI CTRYAG 3 cut(s) 124, 516, 681
BglI GCCNNNNNGGC 1 cut(s) 38
BglII AGATCT 1 cut(s) 180
BisI GCNGC 8 cut(s) 93, 96, 140, 227, 271, 687, 1060, 1141
BlsI GCNGC 8 cut(s) 94, 97, 141, 228, 272, 688, 1061, 1142
BmcAI AGTACT 1 cut(s) 1035
Bme1390I CCNGG 1 cut(s) 275
Bme18I GGWCC 3 cut(s) 13, 277, 1196
BmeT110I CYCGRG 4 cut(s) 210, 399, 1096, 1199
BmgT120I GGNCC 3 cut(s) 13, 277, 1196
BmiI GGNNCC 2 cut(s) 14, 1198
BmrFI CCNGG 1 cut(s) 275
BmsI GCATC 1 cut(s) 151
BoxI GACNNNNGTC 1 cut(s) 53
BpiI GAAGAC 3 cut(s) 426, 984, 1211
BplI GAGNNNNNCTC 2 cut(s) 781, 813
BpmI CTGGAG 1 cut(s) 251
BpuEI CTTGAG 3 cut(s) 161, 176, 596
BsaAI YACGTR 1 cut(s) 1181
BsaHI GRCGYC 2 cut(s) 5, 60
BsaJI CCNNGG 1 cut(s) 99
BsaWI WCCGGW 1 cut(s) 279
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse1I ACTGG 3 cut(s) 325, 420, 435
Bse3DI GCAATG 1 cut(s) 309
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 3 cut(s) 314, 460, 1191
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMI GCAATG 1 cut(s) 309
BseMII CTCAG 4 cut(s) 56, 233, 353, 918
BseNI ACTGG 3 cut(s) 325, 420, 435
BseRI GAGGAG 2 cut(s) 248, 259
BseSI GKGCMC 1 cut(s) 1150
BseXI GCAGC 6 cut(s) 151, 238, 257, 673, 1046, 1127
Bsh1285I CGRYCG 1 cut(s) 617
BshFI GGCC 1 cut(s) 98
BsiEI CGRYCG 1 cut(s) 617
BsiHKAI GWGCWC 2 cut(s) 192, 545
BsiHKCI CYCGRG 4 cut(s) 210, 399, 1096, 1199
BsiSI CCGG 1 cut(s) 280
BslFI GGGAC 3 cut(s) 26, 961, 1182
BslI CCNNNNNNNGG 1 cut(s) 22
BsmAI GTCTC 3 cut(s) 200, 406, 829
BsmFI GGGAC 3 cut(s) 26, 961, 1182
BsmI GAATGC 1 cut(s) 114
BsnI GGCC 1 cut(s) 98
BsoBI CYCGRG 4 cut(s) 210, 399, 1096, 1199
Bsp1286I GDGCHC 3 cut(s) 192, 545, 1150
Bsp143I GATC 8 cut(s) 72, 153, 180, 433, 483, 496, 838, 886
BspACI CCGC 3 cut(s) 92, 95, 727
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 4 cut(s) 55, 234, 352, 917
BspLI GGNNCC 2 cut(s) 14, 1198
BspMAI CTGCAG 1 cut(s) 128
BspPI GGATC 3 cut(s) 441, 478, 491
BsrBI CCGCTC 1 cut(s) 727
BsrDI GCAATG 1 cut(s) 309
BsrI ACTGG 3 cut(s) 325, 420, 435
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 8 cut(s) 72, 153, 180, 433, 483, 496, 838, 886
BssNI GRCGYC 2 cut(s) 5, 60
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 4 cut(s) 615, 682, 970, 1038
Bst6I CTCTTC 4 cut(s) 453, 700, 782, 832
BstACI GRCGYC 2 cut(s) 5, 60
BstBAI YACGTR 1 cut(s) 1181
BstC8I GCNNGC 2 cut(s) 128, 300
BstDEI CTNAG 4 cut(s) 42, 242, 339, 904
BstDSI CCRYGG 1 cut(s) 99
BstF5I GGATG 3 cut(s) 314, 460, 1191
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 8 cut(s) 75, 156, 183, 436, 486, 499, 841, 889
BstMAI GTCTC 3 cut(s) 200, 406, 829
BstMBI GATC 8 cut(s) 72, 153, 180, 433, 483, 496, 838, 886
BstMCI CGRYCG 1 cut(s) 617
BstMWI GCNNNNNNNGC 7 cut(s) 38, 101, 136, 148, 223, 971, 1056
BstNI CCWGG 1 cut(s) 275
BstNSI RCATGY 3 cut(s) 991, 1008, 1059
BstPAI GACNNNNGTC 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 273
BstSFI CTRYAG 3 cut(s) 124, 516, 681
BstSLI GKGCMC 1 cut(s) 1150
BstV1I GCAGC 6 cut(s) 151, 238, 257, 673, 1046, 1127
BstV2I GAAGAC 3 cut(s) 426, 984, 1211
BstX2I RGATCY 2 cut(s) 180, 496
BstYI RGATCY 2 cut(s) 180, 496
BsuRI GGCC 1 cut(s) 98
BtgI CCRYGG 1 cut(s) 99
BtsCI GGATG 3 cut(s) 314, 460, 1191
Cac8I GCNNGC 2 cut(s) 128, 300
CaiI CAGNNNCTG 1 cut(s) 145
CfoI GCGC 1 cut(s) 139
Cfr13I GGNCC 3 cut(s) 13, 277, 1196
CseI GACGC 1 cut(s) 68
Csp6I GTAC 3 cut(s) 322, 445, 1034
CviAII CATG 8 cut(s) 9, 476, 836, 869, 988, 1005, 1056, 1237
CviQI GTAC 3 cut(s) 322, 445, 1034
DdeI CTNAG 4 cut(s) 42, 242, 339, 904
DpnI GATC 8 cut(s) 74, 155, 182, 435, 485, 498, 840, 888
DpnII GATC 8 cut(s) 72, 153, 180, 433, 483, 496, 838, 886
EaeI YGGCCR 1 cut(s) 96
Eam1104I CTCTTC 4 cut(s) 453, 700, 782, 832
EarI CTCTTC 4 cut(s) 453, 700, 782, 832
Ecl136II GAGCTC 1 cut(s) 190
Eco24I GRGCYC 1 cut(s) 192
Eco47I GGWCC 3 cut(s) 13, 277, 1196
Eco53kI GAGCTC 1 cut(s) 190
Eco57I CTGAAG 4 cut(s) 167, 804, 978, 1020
Eco88I CYCGRG 4 cut(s) 210, 399, 1096, 1199
EcoICRI GAGCTC 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 192
FaeI CATG 8 cut(s) 12, 479, 839, 872, 991, 1008, 1059, 1240
FalI AAGNNNNNCTT 2 cut(s) 917, 949
FaqI GGGAC 3 cut(s) 26, 961, 1182
FatI CATG 8 cut(s) 8, 475, 835, 868, 987, 1004, 1055, 1236
FauNDI CATATG 1 cut(s) 1192
FblI GTMKAC 1 cut(s) 57
Fnu4HI GCNGC 8 cut(s) 93, 96, 140, 227, 271, 687, 1060, 1141
FokI GGATG 3 cut(s) 321, 467, 1198
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 8 cut(s) 93, 96, 140, 227, 271, 687, 1060, 1141
FspBI CTAG 4 cut(s) 386, 807, 893, 1031
FspI TGCGCA 1 cut(s) 138
GlaI GCGC 1 cut(s) 138
GluI GCNGC 8 cut(s) 93, 96, 140, 227, 271, 687, 1060, 1141
GsuI CTGGAG 1 cut(s) 251
HaeIII GGCC 1 cut(s) 98
HapII CCGG 1 cut(s) 280
HgaI GACGC 1 cut(s) 68
HhaI GCGC 1 cut(s) 139
Hin1I GRCGYC 2 cut(s) 5, 60
Hin1II CATG 8 cut(s) 12, 479, 839, 872, 991, 1008, 1059, 1240
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HincII GTYRAC 3 cut(s) 48, 58, 265
HindII GTYRAC 3 cut(s) 48, 58, 265
HindIII AAGCTT 1 cut(s) 365
HinfI GANTC 7 cut(s) 208, 402, 637, 652, 730, 790, 1241
HpaII CCGG 1 cut(s) 280
Hpy166II GTNNAC 6 cut(s) 48, 58, 265, 322, 447, 860
Hpy8I GTNNAC 6 cut(s) 48, 58, 265, 322, 447, 860
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 4 cut(s) 328, 463, 574, 1062
HpyCH4III ACNGT 4 cut(s) 615, 682, 970, 1038
HpyCH4IV ACGT 3 cut(s) 439, 1085, 1180
HpyCH4V TGCA 7 cut(s) 112, 126, 302, 475, 567, 689, 1062
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 101, 136, 148, 223, 971, 1056
HpyF3I CTNAG 4 cut(s) 42, 242, 339, 904
HpySE526I ACGT 3 cut(s) 439, 1085, 1180
Hsp92I GRCGYC 2 cut(s) 5, 60
Hsp92II CATG 8 cut(s) 12, 479, 839, 872, 991, 1008, 1059, 1240
HspAI GCGC 1 cut(s) 137
Kzo9I GATC 8 cut(s) 72, 153, 180, 433, 483, 496, 838, 886
LmnI GCTCC 5 cut(s) 169, 187, 223, 282, 548
Lsp1109I GCAGC 6 cut(s) 151, 238, 257, 673, 1046, 1127
LweI GCATC 1 cut(s) 151
MaeI CTAG 4 cut(s) 386, 807, 893, 1031
MaeII ACGT 3 cut(s) 439, 1085, 1180
MaeIII GTNAC 2 cut(s) 634, 670
MalI GATC 8 cut(s) 74, 155, 182, 435, 485, 498, 840, 888
MbiI CCGCTC 1 cut(s) 727
MboI GATC 8 cut(s) 72, 153, 180, 433, 483, 496, 838, 886
MflI RGATCY 2 cut(s) 180, 496
MhlI GDGCHC 3 cut(s) 192, 545, 1150
MluCI AATT 7 cut(s) 131, 160, 348, 719, 960, 1013, 1212
MlyI GAGTC 4 cut(s) 202, 411, 631, 799
MmeI TCCRAC 1 cut(s) 201
MroXI GAANNNNTTC 2 cut(s) 594, 651
MseI TTAA 1 cut(s) 489
MslI CAYNNNNRTG 3 cut(s) 738, 867, 916
MspA1I CMGCKG 3 cut(s) 229, 270, 998
MspI CCGG 1 cut(s) 280
MspR9I CCNGG 1 cut(s) 275
Mva1269I GAATGC 1 cut(s) 114
MvaI CCWGG 1 cut(s) 275
MwoI GCNNNNNNNGC 7 cut(s) 38, 101, 136, 148, 223, 971, 1056
NdeI CATATG 1 cut(s) 1192
NdeII GATC 8 cut(s) 72, 153, 180, 433, 483, 496, 838, 886
NlaIII CATG 8 cut(s) 12, 479, 839, 872, 991, 1008, 1059, 1240
NlaIV GGNNCC 2 cut(s) 14, 1198
NmuCI GTSAC 2 cut(s) 634, 670
NsbI TGCGCA 1 cut(s) 138
NspI RCATGY 3 cut(s) 991, 1008, 1059
PaeR7I CTCGAG 2 cut(s) 210, 399
PciI ACATGT 1 cut(s) 987
PctI GAATGC 1 cut(s) 114
PdmI GAANNNNTTC 2 cut(s) 594, 651
PfeI GAWTC 3 cut(s) 652, 730, 1241
PkrI GCNGC 8 cut(s) 94, 97, 141, 228, 272, 688, 1061, 1142
PleI GAGTC 4 cut(s) 202, 410, 631, 798
PpsI GAGTC 4 cut(s) 202, 410, 631, 798
Ppu21I YACGTR 1 cut(s) 1181
PscI ACATGT 1 cut(s) 987
PshAI GACNNNNGTC 1 cut(s) 53
Psp124BI GAGCTC 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 273
PspN4I GGNNCC 2 cut(s) 14, 1198
PspPI GGNCC 3 cut(s) 13, 277, 1196
PspXI VCTCGAGB 1 cut(s) 399
PsrI GAACNNNNNNTAC 2 cut(s) 305, 337
PstI CTGCAG 1 cut(s) 128
PstNI CAGNNNCTG 1 cut(s) 145
PsuI RGATCY 2 cut(s) 180, 496
PvuII CAGCTG 3 cut(s) 229, 270, 998
RsaI GTAC 3 cut(s) 323, 446, 1035
RsaNI GTAC 3 cut(s) 322, 445, 1034
RseI CAYNNNNRTG 3 cut(s) 738, 867, 916
SacI GAGCTC 1 cut(s) 192
SalI GTCGAC 1 cut(s) 56
SaqAI TTAA 1 cut(s) 489
SatI GCNGC 8 cut(s) 93, 96, 140, 227, 271, 687, 1060, 1141
Sau3AI GATC 8 cut(s) 72, 153, 180, 433, 483, 496, 838, 886
Sau96I GGNCC 3 cut(s) 13, 277, 1196
ScaI AGTACT 1 cut(s) 1035
SchI GAGTC 4 cut(s) 202, 411, 631, 799
ScrFI CCNGG 1 cut(s) 275
SduI GDGCHC 3 cut(s) 192, 545, 1150
SfaNI GCATC 1 cut(s) 151
SfcI CTRYAG 3 cut(s) 124, 516, 681
Sfr274I CTCGAG 2 cut(s) 210, 399
SinI GGWCC 3 cut(s) 13, 277, 1196
SlaI CTCGAG 2 cut(s) 210, 399
SmiMI CAYNNNNRTG 3 cut(s) 738, 867, 916
SmlI CTYRAG 5 cut(s) 176, 191, 210, 399, 575
SmoI CTYRAG 5 cut(s) 176, 191, 210, 399, 575
Sse9I AATT 7 cut(s) 131, 160, 348, 719, 960, 1013, 1212
SsiI CCGC 3 cut(s) 92, 95, 727
SspMI CTAG 4 cut(s) 386, 807, 893, 1031
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 273
TaaI ACNGT 4 cut(s) 615, 682, 970, 1038
TaiI ACGT 3 cut(s) 442, 1088, 1183
TaqI TCGA 3 cut(s) 57, 211, 400
TasI AATT 7 cut(s) 131, 160, 348, 719, 960, 1013, 1212
TatI WGTACW 2 cut(s) 444, 1033
TauI GCSGC 2 cut(s) 95, 98
TfiI GAWTC 3 cut(s) 652, 730, 1241
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TseFI GTSAC 2 cut(s) 634, 670
TseI GCWGC 6 cut(s) 139, 226, 270, 686, 1059, 1140
Tsp45I GTSAC 2 cut(s) 634, 670
TspDTI ATGAA 7 cut(s) 360, 471, 603, 786, 885, 1026, 1096
VpaK11BI GGWCC 3 cut(s) 13, 277, 1196
XapI RAATTY 1 cut(s) 160
XbaI TCTAGA 1 cut(s) 806
XceI RCATGY 3 cut(s) 991, 1008, 1059
XhoI CTCGAG 2 cut(s) 210, 399
XmiI GTMKAC 1 cut(s) 57
XmnI GAANNNNTTC 2 cut(s) 594, 651
XspI CTAG 4 cut(s) 386, 807, 893, 1031
ZrmI AGTACT 1 cut(s) 1035
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.