Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005082

Physical Location & Seq

Genomic Coordinates Forward (+)

6881637 .. 6886185

Gene Structure 4549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g09950.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGCGTCGTTCGGAGAACTTGCAAATGTGGCTCAGTTGACGGGCGTAGATGCGGTGAGGCTGATCGGAATGATTGTGAAGGCGGCGAGCACAGCGCGAATGCACAAGAAAAATTGCAGGCAATTTGCGCAGCATTTGAAGCTGATCGGGAACTTGTTGGAGCAACTGAAGATCTCGGAGCTTAAGAGGTATCCGGAGACGAGGGAGCCTCTGGAGCAGCTAGAGGAGGCTCTGAGAAGGTCTTACATTTTGGTCAGTAGCTGCCAAGACCGGAGCTACCTGTATTTGCTTGCAATGGGGTGGAACATTGTGTATCAGTTCAGGAAGGCTCAGAACGAAATCGATAGATACTTGAAGCTCGTCCCTCTTATTACTCTTGTGGACAACGCTCGAGTCAGGGAAAGATTGGAATACATTGAAATGGATCAATGTGAATACACATTGGATGATGAGGACAGAAAGGTACAGGACGTGATCCTTAAACCAGATCCCTCAATACATGACACTGTAGTACTGAAGAAAACACTTTCATGTTCCTACCCAAAATTAGCTTTTAACGAGGCACTCCAAAAGGAAAATGAAAAGCTTCAACTTGAACTACAACGGTCGCAAGCTGCTTATGATGTGAGTCAATGTGAAGTAATTCAGCGTTTGCTAGAAGTGACAGAAACTGTCGCTGCAGAGTCTTCCCCCAAAAAAAATATTGAGAAAGTAGACCACAGTCATTCAGATGCCAATAACGAGAAAGAACATTCATCTAAAGAAAGCTATAAAAAAAGTGAATCTCGCAAAACTTCAAGAAACACGTCTTCAGTTTCTTCTAGACATGATTTGTTGTCAACTAGAGGTTCACATCGGCATGAAGAATGGAAAACTGATCTACTTGGATGTTGCTCAGAACCAGCTCTGTGTATAAAGACATTCTTCTACCCTTGTGGGACATTTTCAAAAATTGCTTCTGCGGCAACTAACAGGCCTATGTCTTCATCAGAAGCATGTAATGAATTGATGGCTTATTCGCTAGTATTGTCGTGCTGTTGCTATACGAGCTGCATTAGAAGGAAACTTCGCAAGATGTTGAATATCTCGGGGGGCTTTATTGATGACTTCCTTTCTCATTGTATGTGCTGCTGCTGTGCCCTTGTCCAAGAATGGCGAGAAGTTGAAATACGCGGGGTTCATTATGGTGCCGAGAAGACAAAAGTAAGCCCCCCAGCCTCACAGTACATGGAAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

413

Amino Acids

47.06

Weight (kDa)

7.77

Isoelectric Point (pI)

52.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35920 AT4G35920 AT4G35920 AT4G35920 AT4G35920
fragaria_vesca	FvH4_1g11310 FvH4_1g11310 FvH4_1g11310 FvH4_1g11310 FvH4_1g11310
malus_domestica	MD02G1127400.v1.1 MD15G1241400.v1.1
prunus_persica	Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1
pyrus_communis	pycom02g09950 pycom15g21290
rosa_chinensis	RchiOBHm_Chr2g0098791
rosa_laevigata	RLG00000016828
rosa_multiflora	Rmu_sc0002776.1_g000035
rosa_roxburghii	Rroxscaffold_2G00143700
rosa_rugosa	Rorug02G0074800
rosa_samantha	Rh2AG122600 Rh2BG126300 Rh2CG127200 Rh2DG128200
rosa_wichuraiana	Rw0G004270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	129
AccB1I	GGYRCC	1 cut(s)	1187
AccI	GTMKAC	1 cut(s)	714
AccII	CGCG	2 cut(s)	97, 1173
AccIII	TCCGGA	1 cut(s)	193
AciI	CCGC	4 cut(s)	53, 83, 962, 1173
AclWI	GGATC	3 cut(s)	432, 469, 482
AcuI	CTGAAG	3 cut(s)	188, 536, 795
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	465, 513, 1226
AflII	CTTAAG	1 cut(s)	182
AflIII	ACRYGT	1 cut(s)	804
AgsI	TTSAA	9 cut(s)	139, 355, 419, 590, 596, 798, 948, 1081, 1166
AjiI	CACGTC	2 cut(s)	472, 807
Alw21I	GWGCWC	1 cut(s)	92
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	3 cut(s)	432, 469, 482
AlwNI	CAGNNNCTG	2 cut(s)	261, 671
Ama87I	CYCGRG	2 cut(s)	390, 1087
Aor13HI	TCCGGA	1 cut(s)	193
AoxI	GGCC	1 cut(s)	974
ApeKI	GCWGC	8 cut(s)	130, 217, 261, 614, 677, 1050, 1128, 1131
Asp700I	GAANNNNTTC	2 cut(s)	585, 642
AspLEI	GCGC	2 cut(s)	97, 130
AsuHPI	GGTGA	1 cut(s)	67
AvaI	CYCGRG	2 cut(s)	390, 1087
BaeGI	GKGCMC	1 cut(s)	1141
BanI	GGYRCC	1 cut(s)	1187
BarI	GAAGNNNNNNTAC	2 cut(s)	1152, 1184
BbsI	GAAGAC	4 cut(s)	678, 801, 975, 1202
Bbv12I	GWGCWC	1 cut(s)	92
BbvI	GCAGC	8 cut(s)	142, 229, 248, 601, 664, 1037, 1115, 1118
BccI	CCATC	1 cut(s)	1003
BciVI	GTATCC	1 cut(s)	201
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	5 cut(s)	221, 656, 822, 843, 1022
BfmI	CTRYAG	2 cut(s)	507, 678
BfrI	CTTAAG	1 cut(s)	182
BfuI	GTATCC	1 cut(s)	201
BglII	AGATCT	1 cut(s)	171
BmcAI	AGTACT	1 cut(s)	513
BmeT110I	CYCGRG	2 cut(s)	390, 1087
BmgBI	CACGTC	2 cut(s)	472, 807
BmiI	GGNNCC	2 cut(s)	207, 1189
BmsI	GCATC	2 cut(s)	40, 721
BoxI	GACNNNNGTC	1 cut(s)	720
BpiI	GAAGAC	4 cut(s)	678, 801, 975, 1202
BplI	GAGNNNNNCTC	2 cut(s)	193, 225
BpmI	CTGGAG	1 cut(s)	233
Bsa29I	ATCGAT	1 cut(s)	342
BsaHI	GRCGYC	1 cut(s)	5
BsaWI	WCCGGW	2 cut(s)	193, 270
Bse3DI	GCAATG	1 cut(s)	300
BseAI	TCCGGA	1 cut(s)	193
BseCI	ATCGAT	1 cut(s)	342
BseGI	GGATG	2 cut(s)	451, 893
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	4 cut(s)	47, 224, 344, 909
BseRI	GAGGAG	1 cut(s)	239
BseSI	GKGCMC	1 cut(s)	1141
BseXI	GCAGC	8 cut(s)	142, 229, 248, 601, 664, 1037, 1115, 1118
BseYI	CCCAGC	1 cut(s)	1213
Bsh1236I	CGCG	2 cut(s)	97, 1173
Bsh1285I	CGRYCG	1 cut(s)	608
BshFI	GGCC	1 cut(s)	976
BshNI	GGYRCC	1 cut(s)	1187
BshVI	ATCGAT	1 cut(s)	342
BsiEI	CGRYCG	1 cut(s)	608
BsiHKAI	GWGCWC	1 cut(s)	92
BsiHKCI	CYCGRG	2 cut(s)	390, 1087
BsiSI	CCGG	2 cut(s)	194, 271
BslFI	GGGAC	2 cut(s)	347, 952
BsmAI	GTCTC	1 cut(s)	191
BsmBI	CGTCTC	1 cut(s)	191
BsmFI	GGGAC	2 cut(s)	347, 952
BsmI	GAATGC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	976
BsoBI	CYCGRG	2 cut(s)	390, 1087
Bsp1286I	GDGCHC	2 cut(s)	92, 1141
Bsp13I	TCCGGA	1 cut(s)	193
Bsp143I	GATC	7 cut(s)	63, 144, 171, 424, 474, 487, 877
BspACI	CCGC	4 cut(s)	53, 83, 962, 1173
BspANI	GGCC	1 cut(s)	976
BspCNI	CTCAG	4 cut(s)	46, 225, 343, 908
BspDI	ATCGAT	1 cut(s)	342
BspEI	TCCGGA	1 cut(s)	193
BspFNI	CGCG	2 cut(s)	97, 1173
BspLI	GGNNCC	2 cut(s)	207, 1189
BspMAI	CTGCAG	1 cut(s)	682
BspPI	GGATC	3 cut(s)	432, 469, 482
BspT107I	GGYRCC	1 cut(s)	1187
BspTI	CTTAAG	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	300
BssMI	GATC	7 cut(s)	63, 144, 171, 424, 474, 487, 877
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	5 cut(s)	508, 606, 673, 722, 1224
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	182
BstC8I	GCNNGC	4 cut(s)	88, 119, 291, 612
BstDEI	CTNAG	4 cut(s)	33, 233, 330, 895
BstF5I	GGATG	2 cut(s)	451, 893
BstFNI	CGCG	2 cut(s)	97, 1173
BstHHI	GCGC	2 cut(s)	97, 130
BstKTI	GATC	7 cut(s)	66, 147, 174, 427, 477, 490, 880
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	7 cut(s)	63, 144, 171, 424, 474, 487, 877
BstMCI	CGRYCG	1 cut(s)	608
BstMWI	GCNNNNNNNGC	7 cut(s)	29, 92, 127, 139, 214, 962, 1047
BstNSI	RCATGY	1 cut(s)	999
BstPAI	GACNNNNGTC	1 cut(s)	720
BstSFI	CTRYAG	2 cut(s)	507, 678
BstSLI	GKGCMC	1 cut(s)	1141
BstUI	CGCG	2 cut(s)	97, 1173
BstV1I	GCAGC	8 cut(s)	142, 229, 248, 601, 664, 1037, 1115, 1118
BstV2I	GAAGAC	4 cut(s)	678, 801, 975, 1202
BstX2I	RGATCY	2 cut(s)	171, 487
BstYI	RGATCY	2 cut(s)	171, 487
Bsu15I	ATCGAT	1 cut(s)	342
BsuI	GTATCC	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	976
BsuTUI	ATCGAT	1 cut(s)	342
BtrI	CACGTC	2 cut(s)	472, 807
BtsCI	GGATG	2 cut(s)	451, 893
BtsIMutI	CAGTG	1 cut(s)	504
Cac8I	GCNNGC	4 cut(s)	88, 119, 291, 612
CaiI	CAGNNNCTG	2 cut(s)	261, 671
CfoI	GCGC	2 cut(s)	97, 130
ClaI	ATCGAT	1 cut(s)	342
Csp6I	GTAC	3 cut(s)	464, 512, 1225
CviAII	CATG	6 cut(s)	500, 531, 827, 860, 996, 1228
CviQI	GTAC	3 cut(s)	464, 512, 1225
DdeI	CTNAG	4 cut(s)	33, 233, 330, 895
DpnI	GATC	7 cut(s)	65, 146, 173, 426, 476, 489, 879
DpnII	GATC	7 cut(s)	63, 144, 171, 424, 474, 487, 877
Eco147I	AGGCCT	1 cut(s)	976
Eco57I	CTGAAG	3 cut(s)	188, 536, 795
Eco88I	CYCGRG	2 cut(s)	390, 1087
Esp3I	CGTCTC	1 cut(s)	191
FaeI	CATG	6 cut(s)	503, 534, 830, 863, 999, 1231
FalI	AAGNNNNNCTT	2 cut(s)	908, 940
FaqI	GGGAC	2 cut(s)	347, 952
FatI	CATG	6 cut(s)	499, 530, 826, 859, 995, 1227
FauI	CCCGC	1 cut(s)	1166
FblI	GTMKAC	1 cut(s)	714
FokI	GGATG	2 cut(s)	458, 900
FspBI	CTAG	5 cut(s)	221, 656, 822, 843, 1022
FspI	TGCGCA	1 cut(s)	129
GlaI	GCGC	2 cut(s)	96, 129
GsaI	CCCAGC	1 cut(s)	1217
GsuI	CTGGAG	1 cut(s)	233
HaeIII	GGCC	1 cut(s)	976
HapII	CCGG	2 cut(s)	194, 271
HhaI	GCGC	2 cut(s)	97, 130
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	6 cut(s)	503, 534, 830, 863, 999, 1231
Hin6I	GCGC	2 cut(s)	95, 128
HinP1I	GCGC	2 cut(s)	95, 128
HincII	GTYRAC	2 cut(s)	39, 840
HindII	GTYRAC	2 cut(s)	39, 840
HindIII	AAGCTT	1 cut(s)	584
HinfI	GANTC	4 cut(s)	393, 628, 683, 782
HpaII	CCGG	2 cut(s)	194, 271
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	5 cut(s)	39, 382, 715, 840, 851
Hpy188I	TCNGA	8 cut(s)	14, 68, 178, 234, 333, 730, 898, 991
Hpy188III	TCNNGA	6 cut(s)	148, 194, 212, 322, 798, 822
Hpy8I	GTNNAC	5 cut(s)	39, 382, 715, 840, 851
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	4 cut(s)	73, 231, 319, 1053
HpyCH4III	ACNGT	5 cut(s)	508, 606, 673, 722, 1224
HpyCH4IV	ACGT	2 cut(s)	471, 806
HpyCH4V	TGCA	6 cut(s)	23, 103, 117, 293, 680, 1053
HpyF10VI	GCNNNNNNNGC	7 cut(s)	29, 92, 127, 139, 214, 962, 1047
HpyF3I	CTNAG	4 cut(s)	33, 233, 330, 895
HpySE526I	ACGT	2 cut(s)	471, 806
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	6 cut(s)	503, 534, 830, 863, 999, 1231
HspAI	GCGC	2 cut(s)	95, 128
Kpn2I	TCCGGA	1 cut(s)	193
Kzo9I	GATC	7 cut(s)	63, 144, 171, 424, 474, 487, 877
LmnI	GCTCC	5 cut(s)	160, 178, 205, 214, 273
Lsp1109I	GCAGC	8 cut(s)	142, 229, 248, 601, 664, 1037, 1115, 1118
LweI	GCATC	2 cut(s)	40, 721
MaeI	CTAG	5 cut(s)	221, 656, 822, 843, 1022
MaeII	ACGT	2 cut(s)	471, 806
MaeIII	GTNAC	1 cut(s)	661
MalI	GATC	7 cut(s)	65, 146, 173, 426, 476, 489, 879
MboI	GATC	7 cut(s)	63, 144, 171, 424, 474, 487, 877
MboII	GAAGA	9 cut(s)	181, 529, 678, 801, 810, 875, 916, 975, 1207
MflI	RGATCY	2 cut(s)	171, 487
MhlI	GDGCHC	2 cut(s)	92, 1141
MluCI	AATT	6 cut(s)	112, 122, 545, 642, 951, 1004
MlyI	GAGTC	3 cut(s)	402, 637, 692
MmeI	TCCRAC	1 cut(s)	138
MroI	TCCGGA	1 cut(s)	193
MroXI	GAANNNNTTC	2 cut(s)	585, 642
MseI	TTAA	3 cut(s)	183, 480, 555
MslI	CAYNNNNRTG	5 cut(s)	419, 529, 729, 858, 1185
MspCI	CTTAAG	1 cut(s)	182
MspI	CCGG	2 cut(s)	194, 271
Mva1269I	GAATGC	1 cut(s)	105
MvnI	CGCG	2 cut(s)	97, 1173
MwoI	GCNNNNNNNGC	7 cut(s)	29, 92, 127, 139, 214, 962, 1047
NdeII	GATC	7 cut(s)	63, 144, 171, 424, 474, 487, 877
NlaIII	CATG	6 cut(s)	503, 534, 830, 863, 999, 1231
NlaIV	GGNNCC	2 cut(s)	207, 1189
NmeAIII	GCCGAG	1 cut(s)	1216
NmuCI	GTSAC	1 cut(s)	661
NsbI	TGCGCA	1 cut(s)	129
NspI	RCATGY	1 cut(s)	999
PaeR7I	CTCGAG	1 cut(s)	390
PceI	AGGCCT	1 cut(s)	976
PctI	GAATGC	1 cut(s)	105
PdmI	GAANNNNTTC	2 cut(s)	585, 642
PfeI	GAWTC	1 cut(s)	782
PleI	GAGTC	3 cut(s)	401, 636, 691
PpsI	GAGTC	3 cut(s)	401, 636, 691
PshAI	GACNNNNGTC	1 cut(s)	720
PspFI	CCCAGC	1 cut(s)	1213
PspN4I	GGNNCC	2 cut(s)	207, 1189
PspXI	VCTCGAGB	1 cut(s)	390
PstI	CTGCAG	1 cut(s)	682
PstNI	CAGNNNCTG	2 cut(s)	261, 671
PsuI	RGATCY	2 cut(s)	171, 487
RsaI	GTAC	3 cut(s)	465, 513, 1226
RsaNI	GTAC	3 cut(s)	464, 512, 1225
RseI	CAYNNNNRTG	5 cut(s)	419, 529, 729, 858, 1185
SaqAI	TTAA	3 cut(s)	183, 480, 555
Sau3AI	GATC	7 cut(s)	63, 144, 171, 424, 474, 487, 877
ScaI	AGTACT	1 cut(s)	513
SchI	GAGTC	3 cut(s)	402, 637, 692
SduI	GDGCHC	2 cut(s)	92, 1141
SfaNI	GCATC	2 cut(s)	40, 721
SfcI	CTRYAG	2 cut(s)	507, 678
Sfr274I	CTCGAG	1 cut(s)	390
SlaI	CTCGAG	1 cut(s)	390
SmiMI	CAYNNNNRTG	5 cut(s)	419, 529, 729, 858, 1185
SmlI	CTYRAG	2 cut(s)	182, 390
SmoI	CTYRAG	2 cut(s)	182, 390
Sse9I	AATT	6 cut(s)	112, 122, 545, 642, 951, 1004
SseBI	AGGCCT	1 cut(s)	976
SsiI	CCGC	4 cut(s)	53, 83, 962, 1173
SspI	AATATT	1 cut(s)	703
SspMI	CTAG	5 cut(s)	221, 656, 822, 843, 1022
StuI	AGGCCT	1 cut(s)	976
TaaI	ACNGT	5 cut(s)	508, 606, 673, 722, 1224
TaiI	ACGT	2 cut(s)	474, 809
TaqI	TCGA	2 cut(s)	342, 391
TasI	AATT	6 cut(s)	112, 122, 545, 642, 951, 1004
TatI	WGTACW	2 cut(s)	511, 1224
TauI	GCSGC	2 cut(s)	86, 965
TfiI	GAWTC	1 cut(s)	782
Tru1I	TTAA	3 cut(s)	183, 480, 555
Tru9I	TTAA	3 cut(s)	183, 480, 555
TscAI	CASTG	1 cut(s)	511
TseFI	GTSAC	1 cut(s)	661
TseI	GCWGC	8 cut(s)	130, 217, 261, 614, 677, 1050, 1128, 1131
Tsp45I	GTSAC	1 cut(s)	661
TspDTI	ATGAA	7 cut(s)	519, 594, 744, 876, 975, 1017, 1169
TspRI	CASTG	1 cut(s)	511
Vha464I	CTTAAG	1 cut(s)	182
XbaI	TCTAGA	1 cut(s)	821
XceI	RCATGY	1 cut(s)	999
XhoI	CTCGAG	1 cut(s)	390
XmiI	GTMKAC	1 cut(s)	714
XmnI	GAANNNNTTC	2 cut(s)	585, 642
XspI	CTAG	5 cut(s)	221, 656, 822, 843, 1022
ZrmI	AGTACT	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.