Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005082

Physical Location & Seq

Genomic Coordinates Reverse (-)

10774752 .. 10779820

Gene Structure 5069 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG126300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCGTCATGGGACCACTTCGGGGATATTGCCAATGTGGCTCAGTTGACGGGGCTGGACGCCGTGAAGCTGATCGGAATGATCGTGAAGGCGGCGGCCACGGCGAGAATGCACAAGAAGAACTGCAGGCAATTTGCGCAGCATCTGAAGCTGATCGGGAATTTATTGGAGCAACTCAAGATCTCGGAACTCAAGAGGTATCCGGAGACTCGAGAGCCGTTGGAGCAGCTGGAGGAGGCTCTGAGGAGGTCATACATTTTGGTCAACAGCTGCCAAGACCGGAGCTATTTGTATCTGCTTGCAATGGGATGGAACATCGTGTACCAGTTCAGGAAGGCTCAGAATGAAATTGATAGATACTTGAAGCTTGTGCCTTTGATTACTCTAGTGGATAATGCTCGAGTCAGGGAGAGACTGGAAGACATTGAACTGGATCAACGTGAGTACACATTGGATGAAGAGGATAGGAAGGTGCACGATGTGATCCTTAAACCAGATCCCTGTAAAAACGATACTGTAGTGTTGAAGAAAACGCTTTCGTGCTCCTATCCAAACTTGCCTTTTTGCAAGGCGCTTGAGAAGGAAAATGAAAAACTTCAACTTGAACTACAACGGTCGCAATCTACTTATGATGTGACTCAATGTGAAGTGATTCAGCGTTTGATAGAAGTGACTGAAACTGTAGCTGCAAACTCTTCCCCTGAAAAAAATCAGAAGAAATTCGAGCGGAATCATTCAGATGTCAATAGTGTGAAAGAACATTCATCTGATGAAAAAAACTACAAGAAGAGTCAACCTCACATTTCTAGAAACACATCTTCAGTCTCTTCTGGACATGATCTGTTGTCAAATAGAGGTTCACATTACCATGAAGAATGGAATACTGATCTTCTAGGTTGTTGCTCGGAGCCATCTTTGTGTTTCAAGACATTCTTCTATCCTTGTGGGACATTTTCAAAAATTGCTACTGTGGCAACTAACAGGCACATGTCTTCAGCTGAAGCATGTAATGAATTGATGGCGTATTCGCTAGTACTGTCGTGCTGTTGCTACACATGCTGCATTAGAAGGAAACTTCGCAAGACGTTGAATATCTCGGTAATTCCTTTCCCATTTCCTGCACTTCAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

377

Amino Acids

43.4

Weight (kDa)

8.24

Isoelectric Point (pI)

51.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCAfunc	PF19584	24 - 165	1.4e-84	MCAfunc domain
PLAC8	PF04749	293 - 366	2e-10	PLAC8 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35920 AT4G35920 AT4G35920 AT4G35920 AT4G35920
fragaria_vesca	FvH4_1g11310 FvH4_1g11310 FvH4_1g11310 FvH4_1g11310 FvH4_1g11310
malus_domestica	MD02G1127400.v1.1 MD15G1241400.v1.1
prunus_persica	Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1
pyrus_communis	pycom02g09950 pycom15g21290
rosa_chinensis	RchiOBHm_Chr2g0098791
rosa_laevigata	RLG00000016828
rosa_multiflora	Rmu_sc0002776.1_g000035
rosa_roxburghii	Rroxscaffold_2G00143700
rosa_rugosa	Rorug02G0074800
rosa_samantha	Rh2AG122600 Rh2BG126300 Rh2CG127200 Rh2DG128200
rosa_wichuraiana	Rw0G004270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	138
AccBSI	CCGCTC	1 cut(s)	727
AccIII	TCCGGA	1 cut(s)	202
AciI	CCGC	3 cut(s)	92, 95, 727
AclWI	GGATC	3 cut(s)	441, 478, 491
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	2 cut(s)	160, 719
AcuI	CTGAAG	4 cut(s)	167, 804, 978, 1020
AcyI	GRCGYC	2 cut(s)	5, 60
AdeI	CACNNNGTG	1 cut(s)	481
AfaI	GTAC	3 cut(s)	323, 446, 1035
AfiI	CCNNNNNNNGG	1 cut(s)	22
AflIII	ACRYGT	1 cut(s)	987
AgsI	TTSAA	9 cut(s)	364, 428, 526, 599, 605, 925, 957, 1090, 1127
AluBI	AGCT	8 cut(s)	70, 151, 229, 270, 285, 367, 686, 998
AluI	AGCT	8 cut(s)	70, 151, 229, 270, 285, 367, 686, 998
Alw21I	GWGCWC	2 cut(s)	477, 545
Alw26I	GTCTC	3 cut(s)	200, 406, 829
Alw44I	GTGCAC	1 cut(s)	473
AlwI	GGATC	3 cut(s)	441, 478, 491
AlwNI	CAGNNNCTG	1 cut(s)	145
Ama87I	CYCGRG	2 cut(s)	210, 399
Aor13HI	TCCGGA	1 cut(s)	202
AoxI	GGCC	1 cut(s)	96
ApaLI	GTGCAC	1 cut(s)	473
ApeKI	GCWGC	5 cut(s)	139, 226, 270, 686, 1059
ApoI	RAATTY	2 cut(s)	160, 719
Asp700I	GAANNNNTTC	3 cut(s)	594, 651, 719
AspLEI	GCGC	2 cut(s)	139, 574
AspS9I	GGNCC	1 cut(s)	13
AvaI	CYCGRG	2 cut(s)	210, 399
AvaII	GGWCC	1 cut(s)	13
BaeGI	GKGCMC	1 cut(s)	477
BaeI	ACNNNNGTAYC	2 cut(s)	504, 537
BbsI	GAAGAC	2 cut(s)	426, 984
Bbv12I	GWGCWC	2 cut(s)	477, 545
BbvI	GCAGC	5 cut(s)	151, 238, 257, 673, 1046
BccI	CCATC	3 cut(s)	303, 919, 1012
BceAI	ACGGC	3 cut(s)	47, 117, 202
BciVI	GTATCC	1 cut(s)	210
BcoDI	GTCTC	3 cut(s)	200, 406, 829
BfaI	CTAG	4 cut(s)	386, 807, 893, 1031
BfmI	CTRYAG	3 cut(s)	124, 516, 681
BfoI	RGCGCY	1 cut(s)	575
BfuI	GTATCC	1 cut(s)	210
BglI	GCCNNNNNGGC	1 cut(s)	38
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	7 cut(s)	93, 96, 140, 227, 271, 687, 1060
BlsI	GCNGC	7 cut(s)	94, 97, 141, 228, 272, 688, 1061
BmcAI	AGTACT	1 cut(s)	1035
Bme18I	GGWCC	1 cut(s)	13
BmeT110I	CYCGRG	2 cut(s)	210, 399
BmgT120I	GGNCC	1 cut(s)	13
BmiI	GGNNCC	2 cut(s)	14, 909
BmsI	GCATC	1 cut(s)	151
BpiI	GAAGAC	2 cut(s)	426, 984
BplI	GAGNNNNNCTC	2 cut(s)	781, 813
BpmI	CTGGAG	1 cut(s)	251
BpuEI	CTTGAG	3 cut(s)	161, 176, 596
BsaHI	GRCGYC	2 cut(s)	5, 60
BsaJI	CCNNGG	1 cut(s)	99
BsaWI	WCCGGW	2 cut(s)	202, 279
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse1I	ACTGG	3 cut(s)	325, 420, 435
Bse3DI	GCAATG	1 cut(s)	309
BseAI	TCCGGA	1 cut(s)	202
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	2 cut(s)	314, 460
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	3 cut(s)	56, 233, 353
BseNI	ACTGG	3 cut(s)	325, 420, 435
BseRI	GAGGAG	2 cut(s)	248, 259
BseSI	GKGCMC	1 cut(s)	477
BseXI	GCAGC	5 cut(s)	151, 238, 257, 673, 1046
BsgI	GTGCAG	1 cut(s)	1104
Bsh1285I	CGRYCG	1 cut(s)	617
BshFI	GGCC	1 cut(s)	98
BsiEI	CGRYCG	1 cut(s)	617
BsiHKAI	GWGCWC	2 cut(s)	477, 545
BsiHKCI	CYCGRG	2 cut(s)	210, 399
BsiSI	CCGG	2 cut(s)	203, 280
BslFI	GGGAC	2 cut(s)	26, 961
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmAI	GTCTC	3 cut(s)	200, 406, 829
BsmFI	GGGAC	2 cut(s)	26, 961
BsmI	GAATGC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	98
BsoBI	CYCGRG	2 cut(s)	210, 399
Bsp1286I	GDGCHC	2 cut(s)	477, 545
Bsp13I	TCCGGA	1 cut(s)	202
Bsp143I	GATC	9 cut(s)	72, 81, 153, 180, 433, 483, 496, 838, 886
BspACI	CCGC	3 cut(s)	92, 95, 727
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	3 cut(s)	55, 234, 352
BspEI	TCCGGA	1 cut(s)	202
BspLI	GGNNCC	2 cut(s)	14, 909
BspMAI	CTGCAG	1 cut(s)	128
BspPI	GGATC	3 cut(s)	441, 478, 491
BsrBI	CCGCTC	1 cut(s)	727
BsrDI	GCAATG	1 cut(s)	309
BsrI	ACTGG	3 cut(s)	325, 420, 435
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	9 cut(s)	72, 81, 153, 180, 433, 483, 496, 838, 886
BssNI	GRCGYC	2 cut(s)	5, 60
Bst4CI	ACNGT	5 cut(s)	517, 615, 682, 970, 1038
Bst6I	CTCTTC	4 cut(s)	453, 700, 782, 832
BstACI	GRCGYC	2 cut(s)	5, 60
BstC8I	GCNNGC	2 cut(s)	128, 300
BstDEI	CTNAG	3 cut(s)	42, 242, 339
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	2 cut(s)	314, 460
BstH2I	RGCGCY	1 cut(s)	575
BstHHI	GCGC	2 cut(s)	139, 574
BstKTI	GATC	9 cut(s)	75, 84, 156, 183, 436, 486, 499, 841, 889
BstMAI	GTCTC	3 cut(s)	200, 406, 829
BstMBI	GATC	9 cut(s)	72, 81, 153, 180, 433, 483, 496, 838, 886
BstMCI	CGRYCG	1 cut(s)	617
BstMWI	GCNNNNNNNGC	7 cut(s)	38, 101, 136, 148, 223, 971, 1056
BstNSI	RCATGY	3 cut(s)	991, 1008, 1059
BstSFI	CTRYAG	3 cut(s)	124, 516, 681
BstSLI	GKGCMC	1 cut(s)	477
BstV1I	GCAGC	5 cut(s)	151, 238, 257, 673, 1046
BstV2I	GAAGAC	2 cut(s)	426, 984
BstX2I	RGATCY	2 cut(s)	180, 496
BstYI	RGATCY	2 cut(s)	180, 496
BsuI	GTATCC	1 cut(s)	210
BsuRI	GGCC	1 cut(s)	98
BtgI	CCRYGG	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	314, 460
Cac8I	GCNNGC	2 cut(s)	128, 300
CaiI	CAGNNNCTG	1 cut(s)	145
CfoI	GCGC	2 cut(s)	139, 574
Cfr13I	GGNCC	1 cut(s)	13
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	3 cut(s)	322, 445, 1034
CviAII	CATG	6 cut(s)	9, 836, 869, 988, 1005, 1056
CviQI	GTAC	3 cut(s)	322, 445, 1034
DdeI	CTNAG	3 cut(s)	42, 242, 339
DpnI	GATC	9 cut(s)	74, 83, 155, 182, 435, 485, 498, 840, 888
DpnII	GATC	9 cut(s)	72, 81, 153, 180, 433, 483, 496, 838, 886
DraIII	CACNNNGTG	1 cut(s)	481
EaeI	YGGCCR	1 cut(s)	96
Eam1104I	CTCTTC	4 cut(s)	453, 700, 782, 832
EarI	CTCTTC	4 cut(s)	453, 700, 782, 832
Eco47I	GGWCC	1 cut(s)	13
Eco57I	CTGAAG	4 cut(s)	167, 804, 978, 1020
Eco88I	CYCGRG	2 cut(s)	210, 399
FaeI	CATG	6 cut(s)	12, 839, 872, 991, 1008, 1059
FaiI	YATR	8 cut(s)	10, 253, 630, 837, 870, 989, 1006, 1057
FalI	AAGNNNNNCTT	2 cut(s)	917, 949
FaqI	GGGAC	2 cut(s)	26, 961
FatI	CATG	6 cut(s)	8, 835, 868, 987, 1004, 1055
Fnu4HI	GCNGC	7 cut(s)	93, 96, 140, 227, 271, 687, 1060
FokI	GGATG	2 cut(s)	321, 467
Fsp4HI	GCNGC	7 cut(s)	93, 96, 140, 227, 271, 687, 1060
FspBI	CTAG	4 cut(s)	386, 807, 893, 1031
FspI	TGCGCA	1 cut(s)	138
GlaI	GCGC	2 cut(s)	138, 573
GluI	GCNGC	7 cut(s)	93, 96, 140, 227, 271, 687, 1060
GsuI	CTGGAG	1 cut(s)	251
HaeII	RGCGCY	1 cut(s)	575
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	2 cut(s)	203, 280
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	2 cut(s)	139, 574
Hin1I	GRCGYC	2 cut(s)	5, 60
Hin1II	CATG	6 cut(s)	12, 839, 872, 991, 1008, 1059
Hin6I	GCGC	2 cut(s)	137, 572
HinP1I	GCGC	2 cut(s)	137, 572
HincII	GTYRAC	3 cut(s)	48, 265, 794
HindII	GTYRAC	3 cut(s)	48, 265, 794
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	6 cut(s)	208, 402, 637, 652, 730, 790
HpaII	CCGG	2 cut(s)	203, 280
Hpy166II	GTNNAC	7 cut(s)	48, 265, 322, 447, 475, 794, 860
Hpy188I	TCNGA	9 cut(s)	77, 147, 187, 243, 342, 714, 739, 769, 907
Hpy8I	GTNNAC	7 cut(s)	48, 265, 322, 447, 475, 794, 860
HpyAV	CCTTC	5 cut(s)	82, 328, 463, 574, 1062
HpyCH4III	ACNGT	5 cut(s)	517, 615, 682, 970, 1038
HpyCH4IV	ACGT	2 cut(s)	439, 1085
HpyCH4V	TGCA	8 cut(s)	112, 126, 302, 475, 567, 689, 1062, 1121
HpyF10VI	GCNNNNNNNGC	7 cut(s)	38, 101, 136, 148, 223, 971, 1056
HpyF3I	CTNAG	3 cut(s)	42, 242, 339
HpySE526I	ACGT	2 cut(s)	439, 1085
Hsp92I	GRCGYC	2 cut(s)	5, 60
Hsp92II	CATG	6 cut(s)	12, 839, 872, 991, 1008, 1059
HspAI	GCGC	2 cut(s)	137, 572
Kpn2I	TCCGGA	1 cut(s)	202
Kzo9I	GATC	9 cut(s)	72, 81, 153, 180, 433, 483, 496, 838, 886
LmnI	GCTCC	5 cut(s)	169, 223, 282, 548, 907
Lsp1109I	GCAGC	5 cut(s)	151, 238, 257, 673, 1046
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	4 cut(s)	386, 807, 893, 1031
MaeII	ACGT	2 cut(s)	439, 1085
MaeIII	GTNAC	2 cut(s)	634, 670
MalI	GATC	9 cut(s)	74, 83, 155, 182, 435, 485, 498, 840, 888
MbiI	CCGCTC	1 cut(s)	727
MboI	GATC	9 cut(s)	72, 81, 153, 180, 433, 483, 496, 838, 886
MflI	RGATCY	2 cut(s)	180, 496
MhlI	GDGCHC	2 cut(s)	477, 545
MluCI	AATT	7 cut(s)	131, 160, 348, 719, 960, 1013, 1101
MlyI	GAGTC	4 cut(s)	202, 411, 631, 799
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	8 cut(s)	189, 226, 229, 237, 240, 454, 807, 848
MroI	TCCGGA	1 cut(s)	202
MroXI	GAANNNNTTC	3 cut(s)	594, 651, 719
MseI	TTAA	1 cut(s)	489
MslI	CAYNNNNRTG	3 cut(s)	738, 867, 916
MspA1I	CMGCKG	3 cut(s)	229, 270, 998
MspI	CCGG	2 cut(s)	203, 280
Mva1269I	GAATGC	1 cut(s)	114
MwoI	GCNNNNNNNGC	7 cut(s)	38, 101, 136, 148, 223, 971, 1056
NdeII	GATC	9 cut(s)	72, 81, 153, 180, 433, 483, 496, 838, 886
NlaIII	CATG	6 cut(s)	12, 839, 872, 991, 1008, 1059
NlaIV	GGNNCC	2 cut(s)	14, 909
NmuCI	GTSAC	2 cut(s)	634, 670
NsbI	TGCGCA	1 cut(s)	138
NspI	RCATGY	3 cut(s)	991, 1008, 1059
PaeR7I	CTCGAG	2 cut(s)	210, 399
PciI	ACATGT	1 cut(s)	987
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PctI	GAATGC	1 cut(s)	114
PdmI	GAANNNNTTC	3 cut(s)	594, 651, 719
PfeI	GAWTC	2 cut(s)	652, 730
PkrI	GCNGC	7 cut(s)	94, 97, 141, 228, 272, 688, 1061
PleI	GAGTC	4 cut(s)	202, 410, 631, 798
PpsI	GAGTC	4 cut(s)	202, 410, 631, 798
PscI	ACATGT	1 cut(s)	987
PspN4I	GGNNCC	2 cut(s)	14, 909
PspPI	GGNCC	1 cut(s)	13
PspXI	VCTCGAGB	1 cut(s)	399
PsrI	GAACNNNNNNTAC	2 cut(s)	305, 337
PstI	CTGCAG	1 cut(s)	128
PstNI	CAGNNNCTG	1 cut(s)	145
PsuI	RGATCY	2 cut(s)	180, 496
PvuII	CAGCTG	3 cut(s)	229, 270, 998
RsaI	GTAC	3 cut(s)	323, 446, 1035
RsaNI	GTAC	3 cut(s)	322, 445, 1034
RseI	CAYNNNNRTG	3 cut(s)	738, 867, 916
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	7 cut(s)	93, 96, 140, 227, 271, 687, 1060
Sau3AI	GATC	9 cut(s)	72, 81, 153, 180, 433, 483, 496, 838, 886
Sau96I	GGNCC	1 cut(s)	13
ScaI	AGTACT	1 cut(s)	1035
SchI	GAGTC	4 cut(s)	202, 411, 631, 799
SduI	GDGCHC	2 cut(s)	477, 545
SfaNI	GCATC	1 cut(s)	151
SfcI	CTRYAG	3 cut(s)	124, 516, 681
Sfr274I	CTCGAG	2 cut(s)	210, 399
SinI	GGWCC	1 cut(s)	13
SlaI	CTCGAG	2 cut(s)	210, 399
SmiMI	CAYNNNNRTG	3 cut(s)	738, 867, 916
SmlI	CTYRAG	5 cut(s)	176, 191, 210, 399, 575
SmoI	CTYRAG	5 cut(s)	176, 191, 210, 399, 575
Sse9I	AATT	7 cut(s)	131, 160, 348, 719, 960, 1013, 1101
SsiI	CCGC	3 cut(s)	92, 95, 727
SspMI	CTAG	4 cut(s)	386, 807, 893, 1031
TaaI	ACNGT	5 cut(s)	517, 615, 682, 970, 1038
TaiI	ACGT	2 cut(s)	442, 1088
TaqI	TCGA	3 cut(s)	211, 400, 723
TasI	AATT	7 cut(s)	131, 160, 348, 719, 960, 1013, 1101
TatI	WGTACW	2 cut(s)	444, 1033
TauI	GCSGC	2 cut(s)	95, 98
TfiI	GAWTC	2 cut(s)	652, 730
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TseFI	GTSAC	2 cut(s)	634, 670
TseI	GCWGC	5 cut(s)	139, 226, 270, 686, 1059
Tsp45I	GTSAC	2 cut(s)	634, 670
TspDTI	ATGAA	7 cut(s)	360, 471, 603, 753, 786, 885, 1026
VneI	GTGCAC	1 cut(s)	473
VpaK11BI	GGWCC	1 cut(s)	13
XapI	RAATTY	2 cut(s)	160, 719
XbaI	TCTAGA	1 cut(s)	806
XceI	RCATGY	3 cut(s)	991, 1008, 1059
XhoI	CTCGAG	2 cut(s)	210, 399
XmnI	GAANNNNTTC	3 cut(s)	594, 651, 719
XspI	CTAG	4 cut(s)	386, 807, 893, 1031
ZrmI	AGTACT	1 cut(s)	1035

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.