Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005082

Physical Location & Seq

Genomic Coordinates Reverse (-)

10725360 .. 10730445

Gene Structure 5086 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG128200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGCGTCATGGGACCACTTCGGGGATATTGCCAATGTGGCTCAGTTGACGGGGCTGGACGCCGTGAAGCTGATCGGAATGATCGTGAAGGCGGCGGCCACGGCGAGAATGCACAAGAAGAACTGCAGGCAATTTGCGCAGCATCTGAAGCTGATCGGGAATTTATTGGAGCAACTCAAGATCTCGGAGCTCAAGAGGTATCCGGAGACTCGAGAGCCGTTGGAGCAGCTGGAGGAGGCTCTGAGGAGGTCATACATTTTGGTCAACAGCTGCCAAGACCGGAGCTATTTGTATCTGCTTGCAATGGGATGGAACATCGTGTACCAGTTCAGGAAGGCTCAGAATGAAATTGATAGATACTTGAAGCTTGTGCCTTTGATTACTCTAGTGGATAATGCTCGAGTCAGGGAGAGACTGGAAGACATTGAACTGGATCAACGTGAGTACACATTGGATGAAGAGGATAGGAAGGTGCACGATGTGATCCTTAAACCAGATCCCTGTAAAAACGATACTGTAGTGTTGAAGAAAACGCTTTCGTGCTCCTATCCAAACTTGCCTTTTTGCAAGGCGCTTGAGAAGGAAAATGAAAAACTTCAACTTGAACTACAACGGTCGCAATCTACTTATGATGTGACTCAATGTGAAGTGATTCAGCGTTTGATAGAAGTGACTGAAACTGTAGCTGCAAACTCTTCCCCTGAAAAAAATCAGAAGAAATTCGAGCGGAATCATTCAGATGTCAATAGTGCGAAAGAACATTCATCTGATGAAAAAAACTACAAGAAGAGTCAACCTCACATTTCTAGAAACACATCTTCAGTCTCTTCCGGACATGATCTGTTGTCAAATAGAGGTTCACATTACCATGAAGAATGGAATACTGATCTTCTAGGTTGTTGCTCGGAGCCCTCTTTGTGTTTCAAGACATTCTTCTATCCTTGTGGGACATTTTCAAAAATTGCTACTGTGGCAACTAACAGGCACATGTGTAAGTTGGTTGGTTCTGGACTTCTGCACTTAATTTTAAACTATAAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PLAC8

Protein Analysis

347

Amino Acids

39.97

Weight (kDa)

7.94

Isoelectric Point (pI)

44.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MCAfunc	PF19584	24 - 165	1.1e-84	MCAfunc domain
PLAC8	PF04749	293 - 332	4.1e-06	PLAC8 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35920 AT4G35920 AT4G35920 AT4G35920 AT4G35920
fragaria_vesca	FvH4_1g11310 FvH4_1g11310 FvH4_1g11310 FvH4_1g11310 FvH4_1g11310
malus_domestica	MD02G1127400.v1.1 MD15G1241400.v1.1
prunus_persica	Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1 Prupe.7G172600_v2.0.a1
pyrus_communis	pycom02g09950 pycom15g21290
rosa_chinensis	RchiOBHm_Chr2g0098791
rosa_laevigata	RLG00000016828
rosa_multiflora	Rmu_sc0002776.1_g000035
rosa_roxburghii	Rroxscaffold_2G00143700
rosa_rugosa	Rorug02G0074800
rosa_samantha	Rh2AG122600 Rh2BG126300 Rh2CG127200 Rh2DG128200
rosa_wichuraiana	Rw0G004270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	138
AccBSI	CCGCTC	1 cut(s)	727
AccIII	TCCGGA	2 cut(s)	202, 830
AciI	CCGC	3 cut(s)	92, 95, 727
AclWI	GGATC	3 cut(s)	441, 478, 491
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	2 cut(s)	160, 719
AcuI	CTGAAG	2 cut(s)	167, 804
AcyI	GRCGYC	2 cut(s)	5, 60
AdeI	CACNNNGTG	1 cut(s)	481
AfaI	GTAC	2 cut(s)	323, 446
AfiI	CCNNNNNNNGG	1 cut(s)	22
AflIII	ACRYGT	1 cut(s)	987
AgsI	TTSAA	7 cut(s)	364, 428, 526, 599, 605, 925, 957
AluBI	AGCT	9 cut(s)	70, 151, 190, 229, 270, 285, 367, 686, 1039
AluI	AGCT	9 cut(s)	70, 151, 190, 229, 270, 285, 367, 686, 1039
Alw21I	GWGCWC	3 cut(s)	192, 477, 545
Alw26I	GTCTC	3 cut(s)	200, 406, 829
Alw44I	GTGCAC	1 cut(s)	473
AlwI	GGATC	3 cut(s)	441, 478, 491
AlwNI	CAGNNNCTG	1 cut(s)	145
Ama87I	CYCGRG	2 cut(s)	210, 399
Aor13HI	TCCGGA	2 cut(s)	202, 830
AoxI	GGCC	1 cut(s)	96
ApaLI	GTGCAC	1 cut(s)	473
ApeKI	GCWGC	4 cut(s)	139, 226, 270, 686
ApoI	RAATTY	2 cut(s)	160, 719
Asp700I	GAANNNNTTC	3 cut(s)	594, 651, 719
AspLEI	GCGC	2 cut(s)	139, 574
AspS9I	GGNCC	1 cut(s)	13
AvaI	CYCGRG	2 cut(s)	210, 399
AvaII	GGWCC	1 cut(s)	13
BaeGI	GKGCMC	1 cut(s)	477
BaeI	ACNNNNGTAYC	2 cut(s)	504, 537
BanII	GRGCYC	2 cut(s)	192, 912
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	3 cut(s)	192, 477, 545
BbvI	GCAGC	4 cut(s)	151, 238, 257, 673
BccI	CCATC	1 cut(s)	303
BceAI	ACGGC	3 cut(s)	47, 117, 202
BciVI	GTATCC	1 cut(s)	210
BcoDI	GTCTC	3 cut(s)	200, 406, 829
BfaI	CTAG	3 cut(s)	386, 807, 893
BfmI	CTRYAG	3 cut(s)	124, 516, 681
BfoI	RGCGCY	1 cut(s)	575
BfuI	GTATCC	1 cut(s)	210
BglI	GCCNNNNNGGC	1 cut(s)	38
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	6 cut(s)	93, 96, 140, 227, 271, 687
BlsI	GCNGC	6 cut(s)	94, 97, 141, 228, 272, 688
Bme18I	GGWCC	1 cut(s)	13
BmeT110I	CYCGRG	2 cut(s)	210, 399
BmgT120I	GGNCC	1 cut(s)	13
BmiI	GGNNCC	2 cut(s)	14, 909
BmsI	GCATC	1 cut(s)	151
BpiI	GAAGAC	1 cut(s)	426
BplI	GAGNNNNNCTC	2 cut(s)	781, 813
BpmI	CTGGAG	1 cut(s)	251
BpuEI	CTTGAG	3 cut(s)	161, 176, 596
BsaHI	GRCGYC	2 cut(s)	5, 60
BsaJI	CCNNGG	1 cut(s)	99
BsaWI	WCCGGW	3 cut(s)	202, 279, 830
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse1I	ACTGG	3 cut(s)	325, 420, 435
Bse3DI	GCAATG	1 cut(s)	309
BseAI	TCCGGA	2 cut(s)	202, 830
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	2 cut(s)	314, 460
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	3 cut(s)	56, 233, 353
BseNI	ACTGG	3 cut(s)	325, 420, 435
BseRI	GAGGAG	2 cut(s)	248, 259
BseSI	GKGCMC	1 cut(s)	477
BseXI	GCAGC	4 cut(s)	151, 238, 257, 673
BsgI	GTGCAG	1 cut(s)	1001
Bsh1285I	CGRYCG	1 cut(s)	617
BshFI	GGCC	1 cut(s)	98
BsiEI	CGRYCG	1 cut(s)	617
BsiHKAI	GWGCWC	3 cut(s)	192, 477, 545
BsiHKCI	CYCGRG	2 cut(s)	210, 399
BsiSI	CCGG	3 cut(s)	203, 280, 831
BslFI	GGGAC	2 cut(s)	26, 961
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmAI	GTCTC	3 cut(s)	200, 406, 829
BsmFI	GGGAC	2 cut(s)	26, 961
BsmI	GAATGC	1 cut(s)	114
BsnI	GGCC	1 cut(s)	98
BsoBI	CYCGRG	2 cut(s)	210, 399
Bsp1286I	GDGCHC	4 cut(s)	192, 477, 545, 912
Bsp13I	TCCGGA	2 cut(s)	202, 830
Bsp143I	GATC	9 cut(s)	72, 81, 153, 180, 433, 483, 496, 838, 886
BspACI	CCGC	3 cut(s)	92, 95, 727
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	3 cut(s)	55, 234, 352
BspEI	TCCGGA	2 cut(s)	202, 830
BspLI	GGNNCC	2 cut(s)	14, 909
BspMAI	CTGCAG	1 cut(s)	128
BspPI	GGATC	3 cut(s)	441, 478, 491
BsrBI	CCGCTC	1 cut(s)	727
BsrDI	GCAATG	1 cut(s)	309
BsrI	ACTGG	3 cut(s)	325, 420, 435
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	9 cut(s)	72, 81, 153, 180, 433, 483, 496, 838, 886
BssNI	GRCGYC	2 cut(s)	5, 60
Bst4CI	ACNGT	4 cut(s)	517, 615, 682, 970
Bst6I	CTCTTC	4 cut(s)	453, 700, 782, 832
BstACI	GRCGYC	2 cut(s)	5, 60
BstC8I	GCNNGC	2 cut(s)	128, 300
BstDEI	CTNAG	3 cut(s)	42, 242, 339
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	2 cut(s)	314, 460
BstH2I	RGCGCY	1 cut(s)	575
BstHHI	GCGC	2 cut(s)	139, 574
BstKTI	GATC	9 cut(s)	75, 84, 156, 183, 436, 486, 499, 841, 889
BstMAI	GTCTC	3 cut(s)	200, 406, 829
BstMBI	GATC	9 cut(s)	72, 81, 153, 180, 433, 483, 496, 838, 886
BstMCI	CGRYCG	1 cut(s)	617
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 101, 136, 148, 223, 971
BstNSI	RCATGY	1 cut(s)	991
BstSFI	CTRYAG	3 cut(s)	124, 516, 681
BstSLI	GKGCMC	1 cut(s)	477
BstV1I	GCAGC	4 cut(s)	151, 238, 257, 673
BstV2I	GAAGAC	1 cut(s)	426
BstX2I	RGATCY	2 cut(s)	180, 496
BstYI	RGATCY	2 cut(s)	180, 496
BsuI	GTATCC	1 cut(s)	210
BsuRI	GGCC	1 cut(s)	98
BtgI	CCRYGG	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	314, 460
Cac8I	GCNNGC	2 cut(s)	128, 300
CaiI	CAGNNNCTG	1 cut(s)	145
CfoI	GCGC	2 cut(s)	139, 574
Cfr13I	GGNCC	1 cut(s)	13
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	2 cut(s)	322, 445
CviAII	CATG	4 cut(s)	9, 836, 869, 988
CviQI	GTAC	2 cut(s)	322, 445
DdeI	CTNAG	3 cut(s)	42, 242, 339
DpnI	GATC	9 cut(s)	74, 83, 155, 182, 435, 485, 498, 840, 888
DpnII	GATC	9 cut(s)	72, 81, 153, 180, 433, 483, 496, 838, 886
DraI	TTTAAA	1 cut(s)	1029
DraIII	CACNNNGTG	1 cut(s)	481
EaeI	YGGCCR	1 cut(s)	96
Eam1104I	CTCTTC	4 cut(s)	453, 700, 782, 832
EarI	CTCTTC	4 cut(s)	453, 700, 782, 832
Ecl136II	GAGCTC	1 cut(s)	190
Eco24I	GRGCYC	2 cut(s)	192, 912
Eco47I	GGWCC	1 cut(s)	13
Eco53kI	GAGCTC	1 cut(s)	190
Eco57I	CTGAAG	2 cut(s)	167, 804
Eco88I	CYCGRG	2 cut(s)	210, 399
EcoICRI	GAGCTC	1 cut(s)	190
EcoT38I	GRGCYC	2 cut(s)	192, 912
FaeI	CATG	4 cut(s)	12, 839, 872, 991
FaiI	YATR	8 cut(s)	10, 253, 630, 837, 870, 989, 1035, 1042
FalI	AAGNNNNNCTT	2 cut(s)	917, 949
FaqI	GGGAC	2 cut(s)	26, 961
FatI	CATG	4 cut(s)	8, 835, 868, 987
Fnu4HI	GCNGC	6 cut(s)	93, 96, 140, 227, 271, 687
FokI	GGATG	2 cut(s)	321, 467
FriOI	GRGCYC	2 cut(s)	192, 912
Fsp4HI	GCNGC	6 cut(s)	93, 96, 140, 227, 271, 687
FspBI	CTAG	3 cut(s)	386, 807, 893
FspI	TGCGCA	1 cut(s)	138
GlaI	GCGC	2 cut(s)	138, 573
GluI	GCNGC	6 cut(s)	93, 96, 140, 227, 271, 687
GsuI	CTGGAG	1 cut(s)	251
HaeII	RGCGCY	1 cut(s)	575
HaeIII	GGCC	1 cut(s)	98
HapII	CCGG	3 cut(s)	203, 280, 831
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	2 cut(s)	139, 574
Hin1I	GRCGYC	2 cut(s)	5, 60
Hin1II	CATG	4 cut(s)	12, 839, 872, 991
Hin6I	GCGC	2 cut(s)	137, 572
HinP1I	GCGC	2 cut(s)	137, 572
HincII	GTYRAC	3 cut(s)	48, 265, 794
HindII	GTYRAC	3 cut(s)	48, 265, 794
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	6 cut(s)	208, 402, 637, 652, 730, 790
HpaII	CCGG	3 cut(s)	203, 280, 831
Hpy166II	GTNNAC	7 cut(s)	48, 265, 322, 447, 475, 794, 860
Hpy188I	TCNGA	9 cut(s)	77, 147, 187, 243, 342, 714, 739, 769, 907
Hpy8I	GTNNAC	7 cut(s)	48, 265, 322, 447, 475, 794, 860
HpyAV	CCTTC	4 cut(s)	82, 328, 463, 574
HpyCH4III	ACNGT	4 cut(s)	517, 615, 682, 970
HpyCH4IV	ACGT	1 cut(s)	439
HpyCH4V	TGCA	7 cut(s)	112, 126, 302, 475, 567, 689, 1018
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 101, 136, 148, 223, 971
HpyF3I	CTNAG	3 cut(s)	42, 242, 339
HpySE526I	ACGT	1 cut(s)	439
Hsp92I	GRCGYC	2 cut(s)	5, 60
Hsp92II	CATG	4 cut(s)	12, 839, 872, 991
HspAI	GCGC	2 cut(s)	137, 572
Kpn2I	TCCGGA	2 cut(s)	202, 830
Kzo9I	GATC	9 cut(s)	72, 81, 153, 180, 433, 483, 496, 838, 886
LmnI	GCTCC	6 cut(s)	169, 187, 223, 282, 548, 907
Lsp1109I	GCAGC	4 cut(s)	151, 238, 257, 673
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	3 cut(s)	386, 807, 893
MaeII	ACGT	1 cut(s)	439
MaeIII	GTNAC	2 cut(s)	634, 670
MalI	GATC	9 cut(s)	74, 83, 155, 182, 435, 485, 498, 840, 888
MbiI	CCGCTC	1 cut(s)	727
MboI	GATC	9 cut(s)	72, 81, 153, 180, 433, 483, 496, 838, 886
MflI	RGATCY	2 cut(s)	180, 496
MhlI	GDGCHC	4 cut(s)	192, 477, 545, 912
MluCI	AATT	6 cut(s)	131, 160, 348, 719, 960, 1023
MlyI	GAGTC	4 cut(s)	202, 411, 631, 799
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	9 cut(s)	189, 226, 229, 237, 240, 454, 807, 848, 922
MroI	TCCGGA	2 cut(s)	202, 830
MroXI	GAANNNNTTC	3 cut(s)	594, 651, 719
MseI	TTAA	3 cut(s)	489, 1022, 1028
MslI	CAYNNNNRTG	2 cut(s)	738, 867
MspA1I	CMGCKG	2 cut(s)	229, 270
MspI	CCGG	3 cut(s)	203, 280, 831
Mva1269I	GAATGC	1 cut(s)	114
MwoI	GCNNNNNNNGC	6 cut(s)	38, 101, 136, 148, 223, 971
NdeII	GATC	9 cut(s)	72, 81, 153, 180, 433, 483, 496, 838, 886
NlaIII	CATG	4 cut(s)	12, 839, 872, 991
NlaIV	GGNNCC	2 cut(s)	14, 909
NmuCI	GTSAC	2 cut(s)	634, 670
NsbI	TGCGCA	1 cut(s)	138
NspI	RCATGY	1 cut(s)	991
PaeR7I	CTCGAG	2 cut(s)	210, 399
PciI	ACATGT	1 cut(s)	987
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PctI	GAATGC	1 cut(s)	114
PdmI	GAANNNNTTC	3 cut(s)	594, 651, 719
PfeI	GAWTC	2 cut(s)	652, 730
PkrI	GCNGC	6 cut(s)	94, 97, 141, 228, 272, 688
PleI	GAGTC	4 cut(s)	202, 410, 631, 798
PpsI	GAGTC	4 cut(s)	202, 410, 631, 798
PscI	ACATGT	1 cut(s)	987
Psp124BI	GAGCTC	1 cut(s)	192
PspN4I	GGNNCC	2 cut(s)	14, 909
PspPI	GGNCC	1 cut(s)	13
PspXI	VCTCGAGB	1 cut(s)	399
PsrI	GAACNNNNNNTAC	2 cut(s)	305, 337
PstI	CTGCAG	1 cut(s)	128
PstNI	CAGNNNCTG	1 cut(s)	145
PsuI	RGATCY	2 cut(s)	180, 496
PvuII	CAGCTG	2 cut(s)	229, 270
RsaI	GTAC	2 cut(s)	323, 446
RsaNI	GTAC	2 cut(s)	322, 445
RseI	CAYNNNNRTG	2 cut(s)	738, 867
SacI	GAGCTC	1 cut(s)	192
SaqAI	TTAA	3 cut(s)	489, 1022, 1028
SatI	GCNGC	6 cut(s)	93, 96, 140, 227, 271, 687
Sau3AI	GATC	9 cut(s)	72, 81, 153, 180, 433, 483, 496, 838, 886
Sau96I	GGNCC	1 cut(s)	13
SchI	GAGTC	4 cut(s)	202, 411, 631, 799
SduI	GDGCHC	4 cut(s)	192, 477, 545, 912
SfaNI	GCATC	1 cut(s)	151
SfcI	CTRYAG	3 cut(s)	124, 516, 681
Sfr274I	CTCGAG	2 cut(s)	210, 399
SinI	GGWCC	1 cut(s)	13
SlaI	CTCGAG	2 cut(s)	210, 399
SmiMI	CAYNNNNRTG	2 cut(s)	738, 867
SmlI	CTYRAG	5 cut(s)	176, 191, 210, 399, 575
SmoI	CTYRAG	5 cut(s)	176, 191, 210, 399, 575
Sse9I	AATT	6 cut(s)	131, 160, 348, 719, 960, 1023
SsiI	CCGC	3 cut(s)	92, 95, 727
SspMI	CTAG	3 cut(s)	386, 807, 893
SstI	GAGCTC	1 cut(s)	192
TaaI	ACNGT	4 cut(s)	517, 615, 682, 970
TaiI	ACGT	1 cut(s)	442
TaqI	TCGA	3 cut(s)	211, 400, 723
TasI	AATT	6 cut(s)	131, 160, 348, 719, 960, 1023
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	2 cut(s)	95, 98
TfiI	GAWTC	2 cut(s)	652, 730
Tru1I	TTAA	3 cut(s)	489, 1022, 1028
Tru9I	TTAA	3 cut(s)	489, 1022, 1028
TseFI	GTSAC	2 cut(s)	634, 670
TseI	GCWGC	4 cut(s)	139, 226, 270, 686
Tsp45I	GTSAC	2 cut(s)	634, 670
TspDTI	ATGAA	6 cut(s)	360, 471, 603, 753, 786, 885
VneI	GTGCAC	1 cut(s)	473
VpaK11BI	GGWCC	1 cut(s)	13
XapI	RAATTY	2 cut(s)	160, 719
XbaI	TCTAGA	1 cut(s)	806
XceI	RCATGY	1 cut(s)	991
XhoI	CTCGAG	2 cut(s)	210, 399
XmnI	GAANNNNTTC	3 cut(s)	594, 651, 719
XspI	CTAG	3 cut(s)	386, 807, 893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.