Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011662

Physical Location & Seq

Genomic Coordinates Reverse (-)

17260937 .. 17262227

Gene Structure 1291 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G36590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGTGAGAAGTACCAAAGGTCGTCAGAAAATAGAGATGAAAAAAATGGAAAACGAAAGCAACCTTCAGGTTACTTTCTCAAAAAGAAGATTCGGTCTTTTCAAAAAAGCTAGTGAACTTTGCACATTAAGTGGTGCAGAGATTCTGTTGATTGTGTTCTCTCCTGGTGGGAAAGTGTTTTCTTTTGGCCATCCAAGTGTTCAAGAACTCATTCATCGCTTTTCGAATCCTAACCATAATTCTGCCATTGTCCATCATCAGAACAACAATCTCCAACTTGTTGAAACCCGTCCGGATAGAAATATCCAATATCTCAACAATATACTCACTGAGGTGCTGGCAAACCAGGAAAAGGAGAAACAGAAGAGAATGGTTTTGGACCTATTGAAAGAATCCAGAGAACAAGTAGGAAACTGGTATGAAAAAGATGTGAAAGATCTCGACATGAATGAAACCAACCAGCTGATATCTGCTCTTCAAGATGTGAAAAAGAAACTGGTAAGAGAAATGTCTCAATATTCTCAAGTAAATGTTTCGCAGAATTACTTTGGTCAAAGTTCTGGCGTGATTGGTGGTGGTAATGTTGGCATTGATCTTTTTGATCAAAGAAGAAATGCATTCAACTATAATCCAAACATGGTGTTTCCCAATCATACACCACCAATGTTTGGATACAACAATGATGGAGTTCTCGTTCCGATATCCAACATGAACTACATGTCAAGTTACAACTTCAACCAGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009553 GO:0009657 GO:0009658 GO:0009791 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048316 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051049 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

248

Amino Acids

28.47

Weight (kDa)

9.19

Isoelectric Point (pI)

53.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	15 - 62	1.6e-23	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36590 AT5G60440
fragaria_vesca	FvH4_2g03030
malus_domestica	MD05G1107900.v1.1 MD05G1114100.v1.1 MD10G1112300.v1.1
prunus_persica	Prupe.8G151900_v2.0.a1 Prupe.8G158400_v2.0.a1 Prupe.8G158500_v2.0.a1
pyrus_communis	pycom05g10880
rosa_chinensis	RchiOBHm_Chr6g0247821
rosa_laevigata	RLG00000015176
rosa_multiflora	Rmu_sc0001048.1_g000003
rosa_roxburghii	Rroxscaffold_180G00433220 Rroxscaffold_7G00213620
rosa_rugosa	Rorug05G0529300
rosa_samantha	Rh6AG044000 Rh6BG038700 Rh6CG037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	668
AccIII	TCCGGA	1 cut(s)	292
AcoI	YGGCCR	1 cut(s)	187
AcuI	CTGAAG	1 cut(s)	50
AfaI	GTAC	1 cut(s)	13
AfiI	CCNNNNNNNGG	2 cut(s)	352, 668
AflIII	ACRYGT	1 cut(s)	717
AgsI	TTSAA	7 cut(s)	103, 203, 284, 388, 479, 622, 736
AjnI	CCWGG	2 cut(s)	163, 345
AleI	CACNNNNGTG	1 cut(s)	332
AloI	GAACNNNNNNTCC	2 cut(s)	678, 710
AluBI	AGCT	3 cut(s)	110, 463, 744
AluI	AGCT	3 cut(s)	110, 463, 744
Alw26I	GTCTC	1 cut(s)	516
Aor13HI	TCCGGA	1 cut(s)	292
AoxI	GGCC	1 cut(s)	187
Asp700I	GAANNNNTTC	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	379
AsuHPI	GGTGA	1 cut(s)	16
AsuII	TTCGAA	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	379
BalI	TGGCCA	1 cut(s)	189
BccI	CCATC	3 cut(s)	198, 261, 677
BciT130I	CCWGG	2 cut(s)	165, 347
BciVI	GTATCC	1 cut(s)	665
BclI	TGATCA	1 cut(s)	601
BcoDI	GTCTC	1 cut(s)	516
BfaI	CTAG	2 cut(s)	111, 745
BfuI	GTATCC	1 cut(s)	665
BglII	AGATCT	1 cut(s)	436
Bme1390I	CCNGG	2 cut(s)	165, 347
Bme18I	GGWCC	1 cut(s)	379
BmgT120I	GGNCC	1 cut(s)	379
BmrFI	CCNGG	2 cut(s)	165, 347
Bpu14I	TTCGAA	1 cut(s)	224
BpuEI	CTTGAG	1 cut(s)	507
BsaWI	WCCGGW	1 cut(s)	292
BsaXI	ACNNNNNCTCC	2 cut(s)	678, 708
Bsc4I	CCNNNNNNNGG	2 cut(s)	352, 668
Bse1I	ACTGG	2 cut(s)	419, 501
BseAI	TCCGGA	1 cut(s)	292
BseBI	CCWGG	2 cut(s)	165, 347
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	2 cut(s)	352, 668
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	2 cut(s)	419, 501
BsgI	GTGCAG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	293
BslI	CCNNNNNNNGG	2 cut(s)	352, 668
BsmAI	GTCTC	1 cut(s)	516
BsmI	GAATGC	1 cut(s)	617
BsnI	GGCC	1 cut(s)	189
Bsp119I	TTCGAA	1 cut(s)	224
Bsp13I	TCCGGA	1 cut(s)	292
Bsp143I	GATC	3 cut(s)	436, 592, 601
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	1 cut(s)	322
BspEI	TCCGGA	1 cut(s)	292
BspQI	GCTCTTC	1 cut(s)	480
BspT104I	TTCGAA	1 cut(s)	224
BsrI	ACTGG	2 cut(s)	419, 501
BssMI	GATC	3 cut(s)	436, 592, 601
Bst2UI	CCWGG	2 cut(s)	165, 347
Bst6I	CTCTTC	2 cut(s)	359, 480
BstBI	TTCGAA	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	1 cut(s)	330
BstF5I	GGATG	1 cut(s)	190
BstKTI	GATC	3 cut(s)	439, 595, 604
BstMAI	GTCTC	1 cut(s)	516
BstMBI	GATC	3 cut(s)	436, 592, 601
BstNI	CCWGG	2 cut(s)	165, 347
BstNSI	RCATGY	1 cut(s)	721
BstSCI	CCNGG	2 cut(s)	163, 345
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
BsuI	GTATCC	1 cut(s)	665
BsuRI	GGCC	1 cut(s)	189
BtgZI	GCGATG	1 cut(s)	200
BtsCI	GGATG	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	327
Cac8I	GCNNGC	1 cut(s)	339
Cfr13I	GGNCC	1 cut(s)	379
Csp6I	GTAC	1 cut(s)	12
CviAII	CATG	4 cut(s)	445, 637, 709, 718
CviJI	RGCY	4 cut(s)	110, 189, 463, 744
CviKI_1	RGCY	4 cut(s)	110, 189, 463, 744
CviQI	GTAC	1 cut(s)	12
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	3 cut(s)	438, 594, 603
DpnII	GATC	3 cut(s)	436, 592, 601
EaeI	YGGCCR	1 cut(s)	187
Eam1104I	CTCTTC	2 cut(s)	359, 480
EarI	CTCTTC	2 cut(s)	359, 480
Eco32I	GATATC	2 cut(s)	468, 702
Eco47I	GGWCC	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	50
EcoRII	CCWGG	2 cut(s)	163, 345
EcoRV	GATATC	2 cut(s)	468, 702
EcoT22I	ATGCAT	1 cut(s)	619
FaeI	CATG	4 cut(s)	448, 640, 712, 721
FaiI	YATR	9 cut(s)	237, 323, 420, 446, 627, 638, 654, 710, 719
FatI	CATG	4 cut(s)	444, 636, 708, 717
FbaI	TGATCA	1 cut(s)	601
FokI	GGATG	1 cut(s)	177
FspBI	CTAG	2 cut(s)	111, 745
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	1 cut(s)	293
Hin1II	CATG	4 cut(s)	448, 640, 712, 721
HinfI	GANTC	4 cut(s)	90, 142, 226, 392
HpaII	CCGG	1 cut(s)	293
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	3 cut(s)	27, 261, 699
Hpy188III	TCNNGA	5 cut(s)	203, 293, 396, 440, 479
Hpy8I	GTNNAC	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	74
HpyCH4V	TGCA	3 cut(s)	123, 137, 617
HpyF3I	CTNAG	1 cut(s)	330
Hsp92II	CATG	4 cut(s)	448, 640, 712, 721
Kpn2I	TCCGGA	1 cut(s)	292
Ksp22I	TGATCA	1 cut(s)	601
Kzo9I	GATC	3 cut(s)	436, 592, 601
LguI	GCTCTTC	1 cut(s)	480
MaeI	CTAG	2 cut(s)	111, 745
MaeIII	GTNAC	2 cut(s)	70, 725
MalI	GATC	3 cut(s)	438, 594, 603
MboI	GATC	3 cut(s)	436, 592, 601
MboII	GAAGA	4 cut(s)	99, 376, 467, 621
MflI	RGATCY	1 cut(s)	436
MlsI	TGGCCA	1 cut(s)	189
MluCI	AATT	2 cut(s)	238, 541
MluNI	TGGCCA	1 cut(s)	189
MmeI	TCCRAC	2 cut(s)	298, 729
MnlI	CCTC	1 cut(s)	325
Mox20I	TGGCCA	1 cut(s)	189
Mph1103I	ATGCAT	1 cut(s)	619
MroI	TCCGGA	1 cut(s)	292
MroXI	GAANNNNTTC	1 cut(s)	210
MscI	TGGCCA	1 cut(s)	189
MseI	TTAA	1 cut(s)	128
MslI	CAYNNNNRTG	2 cut(s)	195, 332
Msp20I	TGGCCA	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	463
MspI	CCGG	1 cut(s)	293
MspR9I	CCNGG	2 cut(s)	165, 347
Mva1269I	GAATGC	1 cut(s)	617
MvaI	CCWGG	2 cut(s)	165, 347
NdeII	GATC	3 cut(s)	436, 592, 601
NlaIII	CATG	4 cut(s)	448, 640, 712, 721
NsiI	ATGCAT	1 cut(s)	619
NspI	RCATGY	1 cut(s)	721
NspV	TTCGAA	1 cut(s)	224
OliI	CACNNNNGTG	1 cut(s)	332
PciI	ACATGT	1 cut(s)	717
PciSI	GCTCTTC	1 cut(s)	480
PctI	GAATGC	1 cut(s)	617
PdmI	GAANNNNTTC	1 cut(s)	210
PfeI	GAWTC	4 cut(s)	90, 142, 226, 392
PflMI	CCANNNNNTGG	1 cut(s)	668
PscI	ACATGT	1 cut(s)	717
Psp6I	CCWGG	2 cut(s)	163, 345
PspGI	CCWGG	2 cut(s)	163, 345
PspPI	GGNCC	1 cut(s)	379
PsuI	RGATCY	1 cut(s)	436
PvuII	CAGCTG	1 cut(s)	463
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
RseI	CAYNNNNRTG	2 cut(s)	195, 332
SapI	GCTCTTC	1 cut(s)	480
SaqAI	TTAA	1 cut(s)	128
Sau3AI	GATC	3 cut(s)	436, 592, 601
Sau96I	GGNCC	1 cut(s)	379
ScrFI	CCNGG	2 cut(s)	165, 347
SetI	ASST	8 cut(s)	22, 66, 72, 112, 336, 384, 465, 746
SfuI	TTCGAA	1 cut(s)	224
SinI	GGWCC	1 cut(s)	379
SmiMI	CAYNNNNRTG	2 cut(s)	195, 332
SmlI	CTYRAG	1 cut(s)	522
SmoI	CTYRAG	1 cut(s)	522
Sse9I	AATT	2 cut(s)	238, 541
SspI	AATATT	1 cut(s)	518
SspMI	CTAG	2 cut(s)	111, 745
StyD4I	CCNGG	2 cut(s)	163, 345
TaqI	TCGA	2 cut(s)	224, 441
TaqII	GACCGA	1 cut(s)	83
TasI	AATT	2 cut(s)	238, 541
TfiI	GAWTC	4 cut(s)	90, 142, 226, 392
Tru1I	TTAA	1 cut(s)	128
Tru9I	TTAA	1 cut(s)	128
TscAI	CASTG	1 cut(s)	334
TspDTI	ATGAA	6 cut(s)	53, 203, 435, 461, 465, 725
TspRI	CASTG	1 cut(s)	334
Van91I	CCANNNNNTGG	1 cut(s)	668
VpaK11BI	GGWCC	1 cut(s)	379
XceI	RCATGY	1 cut(s)	721
XmnI	GAANNNNTTC	1 cut(s)	210
XspI	CTAG	2 cut(s)	111, 745
Zsp2I	ATGCAT	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.