Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0011662

Physical Location & Seq

Genomic Coordinates Forward (+)

18592994 .. 18593677

Gene Structure 684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1112300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCGAGGAAGAGCAAGGGAAGGCAAAAGGTGGAGATGGTCAAGATGGCCAATGAGAGCAATCTCCAAGTGACCTTCTCGAAGCGAAGGTCTGGCCTTTTCAAGAAGGCCAGTGAACTTTGCACTCTCTGTGGTGCTGAGGTGGGCATCATCGTCTTCTCGCCTGGCAGAAAGGTCTTTTCCTTTGGCCACCCGAGTGTAGAGGCGGTCGTGGACCGATTCCTCTCCCGAAACCCATCTAATCACCACCTTCACCCAACCTCTGGCACTATGCAGCTCATTGAGGCTCACCGCAATGCTACTGTGCGCGAGCTCAATACCGAACTGACCCAGGTCATGAACCAACTGGAGGCGGAGAAGAAGCGCTGCGATCAGCTGAACCAGATGAAGAGGGTGAGCCAGGCTCAGTGCTGGTGGGAGGGTCCGGTGGATGAGATGGAGATGCCACAGTTGGACCAGCTGAAGAATTCCCTTGAGGATCTGAAGAAGAACGTGTCGAAACAGGCTGATAGGGTTTTGATCCTGAACACCACAAACCCTAGCAGCCAGTATTTTGTGGGAAGCTCAAGTCACCAGCCTGTGATTCCAAATGTTGGGTTCAACGGGAATCATCATGTTATGCCTCCCCATCCTCTTCCCCATCCCCATGGATGGAACCACCCAGCTTATGGACGCTTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009553 GO:0009657 GO:0009658 GO:0009791 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048316 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051049 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

228

Amino Acids

25.72

Weight (kDa)

9.48

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	15 - 62	1.3e-24	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36590 AT5G60440
fragaria_vesca	FvH4_2g03030
malus_domestica	MD05G1107900.v1.1 MD05G1114100.v1.1 MD10G1112300.v1.1
prunus_persica	Prupe.8G151900_v2.0.a1 Prupe.8G158400_v2.0.a1 Prupe.8G158500_v2.0.a1
pyrus_communis	pycom05g10880
rosa_chinensis	RchiOBHm_Chr6g0247821
rosa_laevigata	RLG00000015176
rosa_multiflora	Rmu_sc0001048.1_g000003
rosa_roxburghii	Rroxscaffold_180G00433220 Rroxscaffold_7G00213620
rosa_rugosa	Rorug05G0529300
rosa_samantha	Rh6AG044000 Rh6BG038700 Rh6CG037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	263, 593, 668
AccII	CGCG	1 cut(s)	309
AciI	CCGC	3 cut(s)	206, 292, 353
AclWI	GGATC	2 cut(s)	486, 514
AcoI	YGGCCR	2 cut(s)	48, 187
AcsI	RAATTY	1 cut(s)	466
AcuI	CTGAAG	2 cut(s)	482, 503
AfeI	AGCGCT	1 cut(s)	365
AfiI	CCNNNNNNNGG	5 cut(s)	263, 349, 593, 651, 668
AflIII	ACRYGT	1 cut(s)	492
AgsI	TTSAA	2 cut(s)	103, 601
AjnI	CCWGG	3 cut(s)	163, 330, 399
AleI	CACNNNNGTG	1 cut(s)	195
AluBI	AGCT	6 cut(s)	277, 313, 376, 460, 564, 665
AluI	AGCT	6 cut(s)	277, 313, 376, 460, 564, 665
Alw21I	GWGCWC	1 cut(s)	315
AlwI	GGATC	2 cut(s)	486, 514
Ama87I	CYCGRG	1 cut(s)	193
Aor51HI	AGCGCT	1 cut(s)	365
AoxI	GGCC	4 cut(s)	48, 94, 108, 187
ApeKI	GCWGC	3 cut(s)	274, 366, 543
ApoI	RAATTY	1 cut(s)	466
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
AspLEI	GCGC	2 cut(s)	309, 366
AspS9I	GGNCC	3 cut(s)	214, 422, 454
AsuHPI	GGTGA	5 cut(s)	236, 245, 281, 406, 563
AvaI	CYCGRG	1 cut(s)	193
AvaII	GGWCC	3 cut(s)	214, 422, 454
BalI	TGGCCA	2 cut(s)	50, 189
BanII	GRGCYC	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	315
BbvCI	CCTCAGC	1 cut(s)	138
BbvI	GCAGC	3 cut(s)	286, 353, 555
BccI	CCATC	7 cut(s)	31, 40, 244, 430, 636, 645, 648
BciT130I	CCWGG	3 cut(s)	165, 332, 401
BfaI	CTAG	1 cut(s)	540
BfoI	RGCGCY	1 cut(s)	367
BisI	GCNGC	3 cut(s)	275, 367, 544
BlsI	GCNGC	3 cut(s)	276, 368, 545
Bme1390I	CCNGG	3 cut(s)	165, 332, 401
Bme18I	GGWCC	3 cut(s)	214, 422, 454
BmeT110I	CYCGRG	1 cut(s)	193
BmgT120I	GGNCC	3 cut(s)	214, 422, 454
BmiI	GGNNCC	2 cut(s)	423, 656
BmrFI	CCNGG	3 cut(s)	165, 332, 401
BmsI	GCATC	2 cut(s)	156, 432
BoxI	GACNNNNGTC	1 cut(s)	332
BpiI	GAAGAC	1 cut(s)	148
BplI	GAGNNNNNCTC	2 cut(s)	388, 420
BpmI	CTGGAG	1 cut(s)	368
Bpu10I	CCTNAGC	1 cut(s)	138
BpuEI	CTTGAG	2 cut(s)	494, 550
BsaJI	CCNNGG	2 cut(s)	330, 646
BsaWI	WCCGGW	1 cut(s)	424
Bsc4I	CCNNNNNNNGG	5 cut(s)	263, 349, 593, 651, 668
Bse1I	ACTGG	3 cut(s)	111, 351, 547
Bse3DI	GCAATG	1 cut(s)	301
BseBI	CCWGG	3 cut(s)	165, 332, 401
BseDI	CCNNGG	2 cut(s)	330, 646
BseGI	GGATG	4 cut(s)	436, 628, 640, 656
BseLI	CCNNNNNNNGG	5 cut(s)	263, 349, 593, 651, 668
BseMI	GCAATG	1 cut(s)	301
BseMII	CTCAG	2 cut(s)	129, 419
BseNI	ACTGG	3 cut(s)	111, 351, 547
BseXI	GCAGC	3 cut(s)	286, 353, 555
BseYI	CCCAGC	1 cut(s)	661
Bsh1236I	CGCG	1 cut(s)	309
Bsh1285I	CGRYCG	1 cut(s)	210
BshFI	GGCC	4 cut(s)	50, 96, 110, 189
BsiEI	CGRYCG	1 cut(s)	210
BsiHKAI	GWGCWC	1 cut(s)	315
BsiHKCI	CYCGRG	1 cut(s)	193
BsiSI	CCGG	1 cut(s)	425
BslI	CCNNNNNNNGG	5 cut(s)	263, 349, 593, 651, 668
BsnI	GGCC	4 cut(s)	50, 96, 110, 189
BsoBI	CYCGRG	1 cut(s)	193
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	3 cut(s)	370, 478, 519
Bsp19I	CCATGG	1 cut(s)	646
BspACI	CCGC	3 cut(s)	206, 292, 353
BspANI	GGCC	4 cut(s)	50, 96, 110, 189
BspCNI	CTCAG	2 cut(s)	130, 418
BspFNI	CGCG	1 cut(s)	309
BspHI	TCATGA	1 cut(s)	336
BspLI	GGNNCC	2 cut(s)	423, 656
BspPI	GGATC	2 cut(s)	486, 514
BspQI	GCTCTTC	1 cut(s)	5
BsrDI	GCAATG	1 cut(s)	301
BsrI	ACTGG	3 cut(s)	111, 351, 547
BssECI	CCNNGG	2 cut(s)	330, 646
BssMI	GATC	3 cut(s)	370, 478, 519
BssT1I	CCWWGG	1 cut(s)	646
Bst2UI	CCWGG	3 cut(s)	165, 332, 401
Bst4CI	ACNGT	2 cut(s)	304, 450
Bst6I	CTCTTC	3 cut(s)	5, 383, 639
BstC8I	GCNNGC	1 cut(s)	311
BstDEI	CTNAG	2 cut(s)	138, 405
BstDSI	CCRYGG	1 cut(s)	646
BstF5I	GGATG	4 cut(s)	436, 628, 640, 656
BstFNI	CGCG	1 cut(s)	309
BstH2I	RGCGCY	1 cut(s)	367
BstHHI	GCGC	2 cut(s)	309, 366
BstKTI	GATC	3 cut(s)	373, 481, 522
BstMBI	GATC	3 cut(s)	370, 478, 519
BstMCI	CGRYCG	1 cut(s)	210
BstNI	CCWGG	3 cut(s)	165, 332, 401
BstPAI	GACNNNNGTC	1 cut(s)	332
BstSCI	CCNGG	3 cut(s)	163, 330, 399
BstUI	CGCG	1 cut(s)	309
BstV1I	GCAGC	3 cut(s)	286, 353, 555
BstV2I	GAAGAC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	478
BstXI	CCANNNNNNTGG	1 cut(s)	647
BstYI	RGATCY	1 cut(s)	478
BsuRI	GGCC	4 cut(s)	50, 96, 110, 189
BtgI	CCRYGG	1 cut(s)	646
BtsCI	GGATG	4 cut(s)	436, 628, 640, 656
BtsIMutI	CAGTG	2 cut(s)	118, 413
Cac8I	GCNNGC	1 cut(s)	311
CciI	TCATGA	1 cut(s)	336
CfoI	GCGC	2 cut(s)	309, 366
Cfr13I	GGNCC	3 cut(s)	214, 422, 454
CviAII	CATG	3 cut(s)	337, 614, 647
DdeI	CTNAG	2 cut(s)	138, 405
DpnI	GATC	3 cut(s)	372, 480, 521
DpnII	GATC	3 cut(s)	370, 478, 519
EaeI	YGGCCR	2 cut(s)	48, 187
Eam1104I	CTCTTC	3 cut(s)	5, 383, 639
EarI	CTCTTC	3 cut(s)	5, 383, 639
EciI	GGCGGA	1 cut(s)	368
Ecl136II	GAGCTC	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	646
Eco24I	GRGCYC	1 cut(s)	315
Eco47I	GGWCC	3 cut(s)	214, 422, 454
Eco47III	AGCGCT	1 cut(s)	365
Eco53kI	GAGCTC	1 cut(s)	313
Eco57I	CTGAAG	2 cut(s)	482, 503
Eco88I	CYCGRG	1 cut(s)	193
EcoICRI	GAGCTC	1 cut(s)	313
EcoRI	GAATTC	1 cut(s)	466
EcoRII	CCWGG	3 cut(s)	163, 330, 399
EcoT14I	CCWWGG	1 cut(s)	646
EcoT38I	GRGCYC	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	646
FaeI	CATG	3 cut(s)	340, 617, 650
FaiI	YATR	6 cut(s)	272, 338, 615, 620, 648, 669
FatI	CATG	3 cut(s)	336, 613, 646
Fnu4HI	GCNGC	3 cut(s)	275, 367, 544
FokI	GGATG	4 cut(s)	443, 615, 627, 663
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	3 cut(s)	275, 367, 544
FspBI	CTAG	1 cut(s)	540
GlaI	GCGC	2 cut(s)	308, 365
GluI	GCNGC	3 cut(s)	275, 367, 544
GsaI	CCCAGC	1 cut(s)	665
GsuI	CTGGAG	1 cut(s)	368
HaeII	RGCGCY	1 cut(s)	367
HaeIII	GGCC	4 cut(s)	50, 96, 110, 189
HapII	CCGG	1 cut(s)	425
HhaI	GCGC	2 cut(s)	309, 366
Hin1II	CATG	3 cut(s)	340, 617, 650
Hin6I	GCGC	2 cut(s)	307, 364
HinP1I	GCGC	2 cut(s)	307, 364
HinfI	GANTC	3 cut(s)	219, 583, 607
HpaII	CCGG	1 cut(s)	425
HphI	GGTGA	5 cut(s)	236, 245, 281, 406, 563
Hpy166II	GTNNAC	2 cut(s)	116, 214
Hpy188I	TCNGA	2 cut(s)	483, 683
Hpy188III	TCNNGA	6 cut(s)	43, 79, 103, 228, 337, 523
Hpy8I	GTNNAC	2 cut(s)	116, 214
HpyAV	CCTTC	5 cut(s)	15, 81, 85, 100, 260
HpyCH4III	ACNGT	2 cut(s)	304, 450
HpyCH4IV	ACGT	1 cut(s)	492
HpyCH4V	TGCA	2 cut(s)	123, 274
HpyF3I	CTNAG	2 cut(s)	138, 405
HpySE526I	ACGT	1 cut(s)	492
Hsp92II	CATG	3 cut(s)	340, 617, 650
HspAI	GCGC	2 cut(s)	307, 364
Kzo9I	GATC	3 cut(s)	370, 478, 519
LguI	GCTCTTC	1 cut(s)	5
Lsp1109I	GCAGC	3 cut(s)	286, 353, 555
LweI	GCATC	2 cut(s)	156, 432
MaeI	CTAG	1 cut(s)	540
MaeII	ACGT	1 cut(s)	492
MaeIII	GTNAC	2 cut(s)	70, 569
MalI	GATC	3 cut(s)	372, 480, 521
MboI	GATC	3 cut(s)	370, 478, 519
MboII	GAAGA	8 cut(s)	22, 148, 370, 400, 475, 496, 499, 626
MflI	RGATCY	1 cut(s)	478
MhlI	GDGCHC	1 cut(s)	315
MlsI	TGGCCA	2 cut(s)	50, 189
MluCI	AATT	1 cut(s)	466
MluNI	TGGCCA	2 cut(s)	50, 189
MmeI	TCCRAC	1 cut(s)	432
Mox20I	TGGCCA	2 cut(s)	50, 189
MscI	TGGCCA	2 cut(s)	50, 189
MslI	CAYNNNNRTG	3 cut(s)	195, 294, 645
Msp20I	TGGCCA	2 cut(s)	50, 189
MspA1I	CMGCKG	2 cut(s)	376, 460
MspI	CCGG	1 cut(s)	425
MspR9I	CCNGG	3 cut(s)	165, 332, 401
MvaI	CCWGG	3 cut(s)	165, 332, 401
MvnI	CGCG	1 cut(s)	309
NcoI	CCATGG	1 cut(s)	646
NdeII	GATC	3 cut(s)	370, 478, 519
NlaIII	CATG	3 cut(s)	340, 617, 650
NlaIV	GGNNCC	2 cut(s)	423, 656
NmuCI	GTSAC	2 cut(s)	70, 569
OliI	CACNNNNGTG	1 cut(s)	195
PagI	TCATGA	1 cut(s)	336
PciSI	GCTCTTC	1 cut(s)	5
PfeI	GAWTC	3 cut(s)	219, 583, 607
PflMI	CCANNNNNTGG	3 cut(s)	263, 593, 668
PkrI	GCNGC	3 cut(s)	276, 368, 545
PshAI	GACNNNNGTC	1 cut(s)	332
Psp124BI	GAGCTC	1 cut(s)	315
Psp6I	CCWGG	3 cut(s)	163, 330, 399
PspFI	CCCAGC	1 cut(s)	661
PspGI	CCWGG	3 cut(s)	163, 330, 399
PspN4I	GGNNCC	2 cut(s)	423, 656
PspPI	GGNCC	3 cut(s)	214, 422, 454
PsuI	RGATCY	1 cut(s)	478
PvuII	CAGCTG	2 cut(s)	376, 460
RseI	CAYNNNNRTG	3 cut(s)	195, 294, 645
SacI	GAGCTC	1 cut(s)	315
SapI	GCTCTTC	1 cut(s)	5
SatI	GCNGC	3 cut(s)	275, 367, 544
Sau3AI	GATC	3 cut(s)	370, 478, 519
Sau96I	GGNCC	3 cut(s)	214, 422, 454
ScrFI	CCNGG	3 cut(s)	165, 332, 401
SduI	GDGCHC	1 cut(s)	315
SfaNI	GCATC	2 cut(s)	156, 432
SinI	GGWCC	3 cut(s)	214, 422, 454
SmiMI	CAYNNNNRTG	3 cut(s)	195, 294, 645
SmlI	CTYRAG	2 cut(s)	473, 565
SmoI	CTYRAG	2 cut(s)	473, 565
Sse9I	AATT	1 cut(s)	466
SsiI	CCGC	3 cut(s)	206, 292, 353
SspMI	CTAG	1 cut(s)	540
SstI	GAGCTC	1 cut(s)	315
StyD4I	CCNGG	3 cut(s)	163, 330, 399
StyI	CCWWGG	1 cut(s)	646
TaaI	ACNGT	2 cut(s)	304, 450
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	2 cut(s)	80, 497
TaqII	GACCGA	1 cut(s)	231
TasI	AATT	1 cut(s)	466
TfiI	GAWTC	3 cut(s)	219, 583, 607
TscAI	CASTG	2 cut(s)	118, 413
TseFI	GTSAC	2 cut(s)	70, 569
TseI	GCWGC	3 cut(s)	274, 366, 543
Tsp45I	GTSAC	2 cut(s)	70, 569
TspDTI	ATGAA	2 cut(s)	353, 401
TspRI	CASTG	2 cut(s)	118, 413
Van91I	CCANNNNNTGG	3 cut(s)	263, 593, 668
VpaK11BI	GGWCC	3 cut(s)	214, 422, 454
XapI	RAATTY	1 cut(s)	466
XcmI	CCANNNNNNNNNTGG	1 cut(s)	665
XspI	CTAG	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.