Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011662

Physical Location & Seq

Genomic Coordinates Forward (+)

24305381 .. 24307716

Gene Structure 2336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G60440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGTGAAAAAAAGCAAAGGTCGTCAAAAAATAGAGATGGTCAAAATGAAAAATGAAAGTAACCTTCAAGTTACTTTTTCAAAAAGAAGATCTGGACTTTTCAAAAAGGCTAGTGAGCTTTGCACACTTTGTGGTGCAGAAGTGGCCATAGTTGTGTTCTCACCTGGTCGAAAAGTCTTTTCTTTTGGTCATCCAAATGTTGATTCTGTAATTGATCGATTCATAAACAATAACCCTCTACCTCCTCACCAACACAACAACATGCAACTTAGAGAAACTCGTCGAAATTCGATTGTTCAGGATCTGAATAATCATCTTACTCAGGTGTTGAGTCAATTAGAAACAGAGAAAAAGAAGTACGACGAGTTAAAGAAAATAAGAGAAAAGACAAAAGCCCTTGGGAATTGGTGGGAAGATCCCGTTGAGGAACTTGCGTTATCTCAACTCGAGGGGTTCAAAGGTAATCTTGAAAATTTGAAGAAAGTAGTTACAGTCGAAGCTTCCAGATTTTTTCAGGCAAATGTTCCAAACTTCTATGTGGGAAGTTCTAGTAATAATGCTGCTTTTGGGATTGATGATGGTAGTCATATCAACCCTGATATGGATCTCTTTAGCCAAAGAAGAATGATGGACATAAATGCCTTCAACTACAACCAGAACCAAATTCACCCTAATCATGCATTACCACCCTTTGGAAACAATGCTTATGGTATTAATGAAGGGTTTGTTCCAGAATACAATGTGAACTTCAGACCAGAGTATAACCCAAACCAAAACCAAATCCAAAACCAAAATCAAGTTCAAATCCAAATCCAAAACCAGAGTTTTAAGAGAGAAAACATCTCTGAATATGAACATCATCATGGTTATCCTCCCCAGTCTAGATCTGATTACTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009553 GO:0009657 GO:0009658 GO:0009791 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048316 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051049 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

299

Amino Acids

34.59

Weight (kDa)

8.87

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	15 - 62	6.1e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0011662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36590 AT5G60440
fragaria_vesca	FvH4_2g03030
malus_domestica	MD05G1107900.v1.1 MD05G1114100.v1.1 MD10G1112300.v1.1
prunus_persica	Prupe.8G151900_v2.0.a1 Prupe.8G158400_v2.0.a1 Prupe.8G158500_v2.0.a1
pyrus_communis	pycom05g10880
rosa_chinensis	RchiOBHm_Chr6g0247821
rosa_laevigata	RLG00000015176
rosa_multiflora	Rmu_sc0001048.1_g000003
rosa_roxburghii	Rroxscaffold_180G00433220 Rroxscaffold_7G00213620
rosa_rugosa	Rorug05G0529300
rosa_samantha	Rh6AG044000 Rh6BG038700 Rh6CG037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	692
AclWI	GGATC	3 cut(s)	309, 410, 612
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	3 cut(s)	286, 472, 663
AcuI	CTGAAG	1 cut(s)	733
AdeI	CACNNNGTG	1 cut(s)	131
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	2 cut(s)	601, 692
AgsI	TTSAA	8 cut(s)	68, 81, 103, 457, 470, 478, 646, 803
AjnI	CCWGG	1 cut(s)	163
AjuI	GAANNNNNNNTTGG	4 cut(s)	187, 219, 783, 815
AluBI	AGCT	2 cut(s)	118, 500
AluI	AGCT	2 cut(s)	118, 500
AlwI	GGATC	3 cut(s)	309, 410, 612
AlwNI	CAGNNNCTG	1 cut(s)	304
Ama87I	CYCGRG	1 cut(s)	446
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	1 cut(s)	560
ApoI	RAATTY	3 cut(s)	286, 472, 663
AseI	ATTAAT	1 cut(s)	714
AsuHPI	GGTGA	4 cut(s)	16, 153, 239, 659
AvaI	CYCGRG	1 cut(s)	446
BalI	TGGCCA	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	547
BccI	CCATC	3 cut(s)	31, 572, 622
BciT130I	CCWGG	1 cut(s)	165
BfaI	CTAG	3 cut(s)	111, 549, 882
BglII	AGATCT	2 cut(s)	89, 884
BisI	GCNGC	1 cut(s)	561
BlsI	GCNGC	1 cut(s)	562
Bme1390I	CCNGG	1 cut(s)	165
BmeT110I	CYCGRG	1 cut(s)	446
BmrFI	CCNGG	1 cut(s)	165
BmrI	ACTGGG	1 cut(s)	871
BmuI	ACTGGG	1 cut(s)	871
Bsa29I	ATCGAT	1 cut(s)	217
BsaBI	GATNNNNATC	1 cut(s)	603
BsaJI	CCNNGG	1 cut(s)	397
Bsc4I	CCNNNNNNNGG	2 cut(s)	601, 692
Bse1I	ACTGG	1 cut(s)	877
Bse8I	GATNNNNATC	1 cut(s)	603
BseBI	CCWGG	1 cut(s)	165
BseCI	ATCGAT	1 cut(s)	217
BseDI	CCNNGG	1 cut(s)	397
BseGI	GGATG	1 cut(s)	190
BseJI	GATNNNNATC	1 cut(s)	603
BseLI	CCNNNNNNNGG	2 cut(s)	601, 692
BseMII	CTCAG	1 cut(s)	335
BseNI	ACTGG	1 cut(s)	877
BseRI	GAGGAG	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	547
BsgI	GTGCAG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	146
BshVI	ATCGAT	1 cut(s)	217
BsiHKCI	CYCGRG	1 cut(s)	446
BslI	CCNNNNNNNGG	2 cut(s)	601, 692
BsnI	GGCC	1 cut(s)	146
BsoBI	CYCGRG	1 cut(s)	446
Bsp143I	GATC	6 cut(s)	89, 214, 301, 415, 604, 884
BspANI	GGCC	1 cut(s)	146
BspCNI	CTCAG	1 cut(s)	334
BspDI	ATCGAT	1 cut(s)	217
BspPI	GGATC	3 cut(s)	309, 410, 612
BsrI	ACTGG	1 cut(s)	877
BssECI	CCNNGG	1 cut(s)	397
BssMI	GATC	6 cut(s)	89, 214, 301, 415, 604, 884
BssT1I	CCWWGG	1 cut(s)	397
Bst2UI	CCWGG	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	493
BstDEI	CTNAG	2 cut(s)	269, 321
BstF5I	GGATG	1 cut(s)	190
BstKTI	GATC	6 cut(s)	92, 217, 304, 418, 607, 887
BstMBI	GATC	6 cut(s)	89, 214, 301, 415, 604, 884
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstNI	CCWGG	1 cut(s)	165
BstNSI	RCATGY	1 cut(s)	265
BstSCI	CCNGG	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	547
BstX2I	RGATCY	5 cut(s)	89, 301, 415, 604, 884
BstYI	RGATCY	5 cut(s)	89, 301, 415, 604, 884
Bsu15I	ATCGAT	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	146
BsuTUI	ATCGAT	1 cut(s)	217
BtsCI	GGATG	1 cut(s)	190
CaiI	CAGNNNCTG	1 cut(s)	304
ClaI	ATCGAT	1 cut(s)	217
CsiI	ACCWGGT	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	3 cut(s)	262, 677, 863
CviJI	RGCY	6 cut(s)	110, 118, 146, 395, 500, 615
CviKI_1	RGCY	6 cut(s)	110, 118, 146, 395, 500, 615
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	2 cut(s)	269, 321
DpnI	GATC	6 cut(s)	91, 216, 303, 417, 606, 886
DpnII	GATC	6 cut(s)	89, 214, 301, 415, 604, 884
DraIII	CACNNNGTG	1 cut(s)	131
EaeI	YGGCCR	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	397
Eco57I	CTGAAG	1 cut(s)	733
Eco88I	CYCGRG	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	397
EcoT22I	ATGCAT	1 cut(s)	682
ErhI	CCWWGG	1 cut(s)	397
FaeI	CATG	3 cut(s)	265, 680, 866
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FatI	CATG	3 cut(s)	261, 676, 862
Fnu4HI	GCNGC	1 cut(s)	561
FokI	GGATG	1 cut(s)	177
Fsp4HI	GCNGC	1 cut(s)	561
FspBI	CTAG	3 cut(s)	111, 549, 882
GluI	GCNGC	1 cut(s)	561
HaeIII	GGCC	1 cut(s)	146
Hin1II	CATG	3 cut(s)	265, 680, 866
HindIII	AAGCTT	1 cut(s)	498
HinfI	GANTC	3 cut(s)	203, 219, 331
HphI	GGTGA	4 cut(s)	16, 153, 239, 659
Hpy166II	GTNNAC	1 cut(s)	745
Hpy188I	TCNGA	4 cut(s)	306, 752, 847, 889
Hpy188III	TCNNGA	6 cut(s)	93, 299, 467, 504, 731, 882
Hpy8I	GTNNAC	1 cut(s)	745
Hpy99I	CGWCG	2 cut(s)	285, 365
HpyAV	CCTTC	3 cut(s)	74, 652, 713
HpyCH4III	ACNGT	1 cut(s)	493
HpyCH4V	TGCA	4 cut(s)	123, 137, 265, 680
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	2 cut(s)	269, 321
Hsp92II	CATG	3 cut(s)	265, 680, 866
Kzo9I	GATC	6 cut(s)	89, 214, 301, 415, 604, 884
Lsp1109I	GCAGC	1 cut(s)	547
MabI	ACCWGGT	1 cut(s)	163
MaeI	CTAG	3 cut(s)	111, 549, 882
MaeIII	GTNAC	3 cut(s)	59, 70, 487
MalI	GATC	6 cut(s)	91, 216, 303, 417, 606, 886
MboI	GATC	6 cut(s)	89, 214, 301, 415, 604, 884
MboII	GAAGA	4 cut(s)	99, 425, 490, 633
MflI	RGATCY	5 cut(s)	89, 301, 415, 604, 884
MlsI	TGGCCA	1 cut(s)	146
MluCI	AATT	6 cut(s)	210, 286, 335, 403, 472, 663
MluNI	TGGCCA	1 cut(s)	146
MlyI	GAGTC	1 cut(s)	340
MnlI	CCTC	6 cut(s)	246, 252, 255, 418, 442, 882
Mox20I	TGGCCA	1 cut(s)	146
Mph1103I	ATGCAT	1 cut(s)	682
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	4 cut(s)	368, 714, 828, 898
MslI	CAYNNNNRTG	3 cut(s)	152, 195, 861
Msp20I	TGGCCA	1 cut(s)	146
MspR9I	CCNGG	1 cut(s)	165
MvaI	CCWGG	1 cut(s)	165
MwoI	GCNNNNNNNGC	1 cut(s)	143
NdeII	GATC	6 cut(s)	89, 214, 301, 415, 604, 884
NlaIII	CATG	3 cut(s)	265, 680, 866
NsiI	ATGCAT	1 cut(s)	682
NspI	RCATGY	1 cut(s)	265
PaeR7I	CTCGAG	1 cut(s)	446
PfeI	GAWTC	2 cut(s)	203, 219
PflMI	CCANNNNNTGG	1 cut(s)	692
PkrI	GCNGC	1 cut(s)	562
PleI	GAGTC	1 cut(s)	339
PpsI	GAGTC	1 cut(s)	339
PshBI	ATTAAT	1 cut(s)	714
Psp6I	CCWGG	1 cut(s)	163
PspGI	CCWGG	1 cut(s)	163
PspXI	VCTCGAGB	1 cut(s)	446
PstNI	CAGNNNCTG	1 cut(s)	304
PsuI	RGATCY	5 cut(s)	89, 301, 415, 604, 884
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
RseI	CAYNNNNRTG	3 cut(s)	152, 195, 861
SaqAI	TTAA	4 cut(s)	368, 714, 828, 898
SatI	GCNGC	1 cut(s)	561
Sau3AI	GATC	6 cut(s)	89, 214, 301, 415, 604, 884
SchI	GAGTC	1 cut(s)	340
ScrFI	CCNGG	1 cut(s)	165
SetI	ASST	8 cut(s)	22, 66, 120, 166, 244, 327, 463, 502
SexAI	ACCWGGT	1 cut(s)	163
Sfr274I	CTCGAG	1 cut(s)	446
SlaI	CTCGAG	1 cut(s)	446
SmiMI	CAYNNNNRTG	3 cut(s)	152, 195, 861
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	6 cut(s)	210, 286, 335, 403, 472, 663
SspMI	CTAG	3 cut(s)	111, 549, 882
StyD4I	CCNGG	1 cut(s)	163
StyI	CCWWGG	1 cut(s)	397
TaaI	ACNGT	1 cut(s)	493
TaqI	TCGA	6 cut(s)	169, 217, 283, 290, 447, 495
TasI	AATT	6 cut(s)	210, 286, 335, 403, 472, 663
TfiI	GAWTC	2 cut(s)	203, 219
Tru1I	TTAA	4 cut(s)	368, 714, 828, 898
Tru9I	TTAA	4 cut(s)	368, 714, 828, 898
TseI	GCWGC	1 cut(s)	560
TspDTI	ATGAA	5 cut(s)	62, 69, 211, 732, 867
Van91I	CCANNNNNTGG	1 cut(s)	692
VspI	ATTAAT	1 cut(s)	714
XapI	RAATTY	3 cut(s)	286, 472, 663
XbaI	TCTAGA	1 cut(s)	881
XceI	RCATGY	1 cut(s)	265
XhoI	CTCGAG	1 cut(s)	446
XspI	CTAG	3 cut(s)	111, 549, 882
Zsp2I	ATGCAT	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.