Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0011662

Physical Location & Seq

Genomic Coordinates Reverse (-)

6323461 .. 6324161

Gene Structure 701 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG038700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGTGAGGAAAAGCAAGGGGCGTCAGAAGGTGGAGATGGTCAAAATGGCCAATGACAGCAACCTTCAAGTGACTTTCTCAAAGCGCCGCTCTGGTCTCTTCAAGAAGGCCAGCGAGCTTTGCACGCTCTGCGGCGCTGAGATAGCCATCATAGTATTCTCACCTGGTAGGAAGGTCTTTTCCTTCGGCCACCCCTGCGTGGAGACTGTTGTAGACCGTTTCCTCACCCGAAACCCTCCTCTCCACCACCAGAACTCGGGCACCATGCAGCTCATCGAGGCTCACCGCAATGCTAACGTTCGGGAGCTCAATGCCGAGCTGACTCAGGTCTCCAACGAGCTGGAGGCCGAGAGGAAGCGAGGAGAGGAGCTGAACCGGGTGCAGAGGGCGAGCCAGGGGAATTGCTGGTGGGAGTCTCCTATTGAGAAGATGGAGATGTCACACTGTGAGCAGCTGGGGGGGTCTCTAGAGGAGCTGAAGAAGGCTGTGGCTAAGCAGGTTGATAGGCTTCTGATTCAGACCACCACAAACCCTAATTCGTATTTCGCAGCAGGTAGCTCTGGTCATCCAACTCTGATCCCTAATGGTGGGTTCAATGGAGTGCCTGTTATGCCTACTCATCCCCATCCTCATGCATGGAATCCAGGATATGGTCGCTTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009553 GO:0009657 GO:0009658 GO:0009791 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048316 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051049 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

221

Amino Acids

24.75

Weight (kDa)

9.32

Isoelectric Point (pI)

40.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	15 - 62	1.4e-24	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36590 AT5G60440
fragaria_vesca	FvH4_2g03030
malus_domestica	MD05G1107900.v1.1 MD05G1114100.v1.1 MD10G1112300.v1.1
prunus_persica	Prupe.8G151900_v2.0.a1 Prupe.8G158400_v2.0.a1 Prupe.8G158500_v2.0.a1
pyrus_communis	pycom05g10880
rosa_chinensis	RchiOBHm_Chr6g0247821
rosa_laevigata	RLG00000015176
rosa_multiflora	Rmu_sc0001048.1_g000003
rosa_roxburghii	Rroxscaffold_180G00433220 Rroxscaffold_7G00213620
rosa_rugosa	Rorug05G0529300
rosa_samantha	Rh6AG044000 Rh6BG038700 Rh6CG037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	487, 542
AccB1I	GGYRCC	1 cut(s)	260
AccB7I	CCANNNNNTGG	1 cut(s)	650
AccBSI	CCGCTC	1 cut(s)	90
AccI	GTMKAC	1 cut(s)	213
AciI	CCGC	3 cut(s)	88, 132, 286
AclI	AACGTT	1 cut(s)	297
AclWI	GGATC	1 cut(s)	571
AcoI	YGGCCR	2 cut(s)	48, 187
AcuI	CTGAAG	1 cut(s)	497
AcyI	GRCGYC	1 cut(s)	22
AdeI	CACNNNGTG	1 cut(s)	446
AfiI	CCNNNNNNNGG	4 cut(s)	199, 256, 587, 650
AgsI	TTSAA	3 cut(s)	68, 103, 595
AjnI	CCWGG	3 cut(s)	163, 393, 643
AluBI	AGCT	9 cut(s)	118, 271, 307, 319, 340, 370, 454, 475, 558
AluI	AGCT	9 cut(s)	118, 271, 307, 319, 340, 370, 454, 475, 558
Alw21I	GWGCWC	1 cut(s)	309
Alw26I	GTCTC	5 cut(s)	101, 197, 334, 420, 468
AlwI	GGATC	1 cut(s)	571
Ama87I	CYCGRG	1 cut(s)	256
AoxI	GGCC	4 cut(s)	48, 108, 187, 345
ApeKI	GCWGC	3 cut(s)	268, 451, 548
AspLEI	GCGC	2 cut(s)	87, 137
AsuC2I	CCSGG	1 cut(s)	377
AsuHPI	GGTGA	4 cut(s)	16, 153, 217, 275
AvaI	CYCGRG	1 cut(s)	256
BaeGI	GKGCMC	1 cut(s)	263
BalI	TGGCCA	1 cut(s)	50
BanI	GGYRCC	1 cut(s)	260
BanII	GRGCYC	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	309
BbvI	GCAGC	3 cut(s)	280, 463, 560
BccI	CCATC	4 cut(s)	31, 155, 424, 633
BciT130I	CCWGG	3 cut(s)	165, 395, 645
BcnI	CCSGG	1 cut(s)	377
BcoDI	GTCTC	5 cut(s)	101, 197, 334, 420, 468
BfaI	CTAG	1 cut(s)	467
BfoI	RGCGCY	2 cut(s)	88, 138
BfuAI	ACCTGC	2 cut(s)	487, 542
BisI	GCNGC	5 cut(s)	88, 133, 269, 452, 549
BlpI	GCTNAGC	1 cut(s)	492
BlsI	GCNGC	5 cut(s)	89, 134, 270, 453, 550
Bme1390I	CCNGG	4 cut(s)	165, 377, 395, 645
BmeT110I	CYCGRG	1 cut(s)	256
BmiI	GGNNCC	1 cut(s)	262
BmrFI	CCNGG	4 cut(s)	165, 377, 395, 645
BoxI	GACNNNNGTC	1 cut(s)	326
BpmI	CTGGAG	1 cut(s)	362
Bpu1102I	GCTNAGC	1 cut(s)	492
BpuMI	CCSGG	1 cut(s)	377
BsaBI	GATNNNNATC	1 cut(s)	146
BsaHI	GRCGYC	1 cut(s)	22
BsaI	GGTCTC	3 cut(s)	101, 334, 468
BsaJI	CCNNGG	1 cut(s)	394
BsaXI	ACNNNNNCTCC	2 cut(s)	591, 621
Bsc4I	CCNNNNNNNGG	4 cut(s)	199, 256, 587, 650
Bse3DI	GCAATG	1 cut(s)	295
Bse8I	GATNNNNATC	1 cut(s)	146
BseBI	CCWGG	3 cut(s)	165, 395, 645
BseDI	CCNNGG	1 cut(s)	394
BseGI	GGATG	3 cut(s)	565, 619, 625
BseJI	GATNNNNATC	1 cut(s)	146
BseLI	CCNNNNNNNGG	4 cut(s)	199, 256, 587, 650
BseMI	GCAATG	1 cut(s)	295
BseMII	CTCAG	2 cut(s)	129, 338
BseRI	GAGGAG	4 cut(s)	228, 375, 380, 485
BseSI	GKGCMC	1 cut(s)	263
BseXI	GCAGC	3 cut(s)	280, 463, 560
BseYI	CCCAGC	1 cut(s)	454
BsgI	GTGCAG	1 cut(s)	401
BshFI	GGCC	4 cut(s)	50, 110, 189, 347
BshNI	GGYRCC	1 cut(s)	260
BsiHKAI	GWGCWC	1 cut(s)	309
BsiHKCI	CYCGRG	1 cut(s)	256
BsiSI	CCGG	1 cut(s)	376
BslI	CCNNNNNNNGG	4 cut(s)	199, 256, 587, 650
BsmAI	GTCTC	5 cut(s)	101, 197, 334, 420, 468
BsnI	GGCC	4 cut(s)	50, 110, 189, 347
Bso31I	GGTCTC	3 cut(s)	101, 334, 468
BsoBI	CYCGRG	1 cut(s)	256
Bsp1286I	GDGCHC	2 cut(s)	263, 309
Bsp143I	GATC	1 cut(s)	576
Bsp1720I	GCTNAGC	1 cut(s)	492
BspACI	CCGC	3 cut(s)	88, 132, 286
BspANI	GGCC	4 cut(s)	50, 110, 189, 347
BspCNI	CTCAG	2 cut(s)	130, 337
BspLI	GGNNCC	1 cut(s)	262
BspMI	ACCTGC	2 cut(s)	487, 542
BspPI	GGATC	1 cut(s)	571
BspT107I	GGYRCC	1 cut(s)	260
BspTNI	GGTCTC	3 cut(s)	101, 334, 468
BsrBI	CCGCTC	1 cut(s)	90
BsrDI	GCAATG	1 cut(s)	295
BssECI	CCNNGG	1 cut(s)	394
BssMI	GATC	1 cut(s)	576
BssNI	GRCGYC	1 cut(s)	22
Bst2UI	CCWGG	3 cut(s)	165, 395, 645
Bst4CI	ACNGT	3 cut(s)	208, 218, 446
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	1 cut(s)	22
BstAPI	GCANNNNNTGC	1 cut(s)	129
BstC8I	GCNNGC	4 cut(s)	112, 116, 125, 391
BstDEI	CTNAG	3 cut(s)	138, 324, 492
BstF5I	GGATG	3 cut(s)	565, 619, 625
BstH2I	RGCGCY	2 cut(s)	88, 138
BstHHI	GCGC	2 cut(s)	87, 137
BstKTI	GATC	1 cut(s)	579
BstMAI	GTCTC	5 cut(s)	101, 197, 334, 420, 468
BstMBI	GATC	1 cut(s)	576
BstMWI	GCNNNNNNNGC	6 cut(s)	120, 124, 129, 143, 195, 610
BstNI	CCWGG	3 cut(s)	165, 395, 645
BstPAI	GACNNNNGTC	1 cut(s)	326
BstSCI	CCNGG	4 cut(s)	163, 375, 393, 643
BstSLI	GKGCMC	1 cut(s)	263
BstV1I	GCAGC	3 cut(s)	280, 463, 560
BstXI	CCANNNNNNTGG	1 cut(s)	340
BsuRI	GGCC	4 cut(s)	50, 110, 189, 347
BtsCI	GGATG	3 cut(s)	565, 619, 625
BtsIMutI	CAGTG	1 cut(s)	442
BveI	ACCTGC	2 cut(s)	487, 542
Cac8I	GCNNGC	4 cut(s)	112, 116, 125, 391
CfoI	GCGC	2 cut(s)	87, 137
CseI	GACGC	1 cut(s)	11
CsiI	ACCWGGT	1 cut(s)	163
CviAII	CATG	3 cut(s)	265, 632, 636
DdeI	CTNAG	3 cut(s)	138, 324, 492
DpnI	GATC	1 cut(s)	578
DpnII	GATC	1 cut(s)	576
DraIII	CACNNNGTG	1 cut(s)	446
EaeI	YGGCCR	2 cut(s)	48, 187
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Ecl136II	GAGCTC	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	309
Eco31I	GGTCTC	3 cut(s)	101, 334, 468
Eco53kI	GAGCTC	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	497
Eco88I	CYCGRG	1 cut(s)	256
EcoICRI	GAGCTC	1 cut(s)	307
EcoRII	CCWGG	3 cut(s)	163, 393, 643
EcoT22I	ATGCAT	1 cut(s)	637
EcoT38I	GRGCYC	1 cut(s)	309
FaeI	CATG	3 cut(s)	268, 635, 639
FaiI	YATR	6 cut(s)	152, 266, 611, 633, 637, 651
FatI	CATG	3 cut(s)	264, 631, 635
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	5 cut(s)	88, 133, 269, 452, 549
FokI	GGATG	3 cut(s)	552, 606, 612
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	5 cut(s)	88, 133, 269, 452, 549
FspBI	CTAG	1 cut(s)	467
GlaI	GCGC	2 cut(s)	86, 136
GluI	GCNGC	5 cut(s)	88, 133, 269, 452, 549
GsaI	CCCAGC	1 cut(s)	458
GsuI	CTGGAG	1 cut(s)	362
HaeII	RGCGCY	2 cut(s)	88, 138
HaeIII	GGCC	4 cut(s)	50, 110, 189, 347
HapII	CCGG	1 cut(s)	376
HgaI	GACGC	1 cut(s)	11
HhaI	GCGC	2 cut(s)	87, 137
Hin1I	GRCGYC	1 cut(s)	22
Hin1II	CATG	3 cut(s)	268, 635, 639
Hin6I	GCGC	2 cut(s)	85, 135
HinP1I	GCGC	2 cut(s)	85, 135
HinfI	GANTC	4 cut(s)	322, 413, 514, 640
HpaII	CCGG	1 cut(s)	376
HphI	GGTGA	4 cut(s)	16, 153, 217, 275
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	5 cut(s)	27, 513, 519, 576, 665
Hpy188III	TCNNGA	3 cut(s)	103, 302, 467
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	6 cut(s)	22, 74, 100, 166, 193, 475
HpyCH4III	ACNGT	3 cut(s)	208, 218, 446
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	4 cut(s)	123, 268, 382, 635
HpyF10VI	GCNNNNNNNGC	6 cut(s)	120, 124, 129, 143, 195, 610
HpyF3I	CTNAG	3 cut(s)	138, 324, 492
HpySE526I	ACGT	1 cut(s)	297
Hsp92I	GRCGYC	1 cut(s)	22
Hsp92II	CATG	3 cut(s)	268, 635, 639
HspAI	GCGC	2 cut(s)	85, 135
Kzo9I	GATC	1 cut(s)	576
LmnI	GCTCC	3 cut(s)	304, 367, 472
Lsp1109I	GCAGC	3 cut(s)	280, 463, 560
MabI	ACCWGGT	1 cut(s)	163
MaeI	CTAG	1 cut(s)	467
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	2 cut(s)	70, 438
MalI	GATC	1 cut(s)	578
MbiI	CCGCTC	1 cut(s)	90
MboI	GATC	1 cut(s)	576
MboII	GAAGA	3 cut(s)	91, 439, 490
MhlI	GDGCHC	2 cut(s)	263, 309
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	2 cut(s)	400, 535
MluNI	TGGCCA	1 cut(s)	50
MlyI	GAGTC	2 cut(s)	316, 422
MmeI	TCCRAC	2 cut(s)	357, 593
Mox20I	TGGCCA	1 cut(s)	50
Mph1103I	ATGCAT	1 cut(s)	637
MscI	TGGCCA	1 cut(s)	50
MslI	CAYNNNNRTG	2 cut(s)	288, 630
Msp20I	TGGCCA	1 cut(s)	50
MspA1I	CMGCKG	1 cut(s)	454
MspI	CCGG	1 cut(s)	376
MspR9I	CCNGG	4 cut(s)	165, 377, 395, 645
MvaI	CCWGG	3 cut(s)	165, 395, 645
MwoI	GCNNNNNNNGC	6 cut(s)	120, 124, 129, 143, 195, 610
NciI	CCSGG	1 cut(s)	377
NdeII	GATC	1 cut(s)	576
NlaIII	CATG	3 cut(s)	268, 635, 639
NlaIV	GGNNCC	1 cut(s)	262
NmeAIII	GCCGAG	2 cut(s)	340, 373
NmuCI	GTSAC	2 cut(s)	70, 438
NsiI	ATGCAT	1 cut(s)	637
PfeI	GAWTC	2 cut(s)	514, 640
PflMI	CCANNNNNTGG	1 cut(s)	650
PfoI	TCCNGGA	1 cut(s)	643
PkrI	GCNGC	5 cut(s)	89, 134, 270, 453, 550
PleI	GAGTC	2 cut(s)	316, 421
PpsI	GAGTC	2 cut(s)	316, 421
PshAI	GACNNNNGTC	1 cut(s)	326
Psp124BI	GAGCTC	1 cut(s)	309
Psp1406I	AACGTT	1 cut(s)	297
Psp6I	CCWGG	3 cut(s)	163, 393, 643
PspFI	CCCAGC	1 cut(s)	454
PspGI	CCWGG	3 cut(s)	163, 393, 643
PspN4I	GGNNCC	1 cut(s)	262
PvuII	CAGCTG	1 cut(s)	454
RseI	CAYNNNNRTG	2 cut(s)	288, 630
SacI	GAGCTC	1 cut(s)	309
SatI	GCNGC	5 cut(s)	88, 133, 269, 452, 549
Sau3AI	GATC	1 cut(s)	576
SchI	GAGTC	2 cut(s)	316, 422
ScrFI	CCNGG	4 cut(s)	165, 377, 395, 645
SduI	GDGCHC	2 cut(s)	263, 309
SexAI	ACCWGGT	1 cut(s)	163
SmiMI	CAYNNNNRTG	2 cut(s)	288, 630
Sse9I	AATT	2 cut(s)	400, 535
SsiI	CCGC	3 cut(s)	88, 132, 286
SspMI	CTAG	1 cut(s)	467
SstI	GAGCTC	1 cut(s)	309
StyD4I	CCNGG	4 cut(s)	163, 375, 393, 643
TaaI	ACNGT	3 cut(s)	208, 218, 446
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	1 cut(s)	276
TasI	AATT	2 cut(s)	400, 535
TauI	GCSGC	2 cut(s)	90, 135
TfiI	GAWTC	2 cut(s)	514, 640
TscAI	CASTG	1 cut(s)	449
TseFI	GTSAC	2 cut(s)	70, 438
TseI	GCWGC	3 cut(s)	268, 451, 548
Tsp45I	GTSAC	2 cut(s)	70, 438
TspRI	CASTG	1 cut(s)	449
Van91I	CCANNNNNTGG	1 cut(s)	650
XbaI	TCTAGA	1 cut(s)	466
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	1 cut(s)	467
Zsp2I	ATGCAT	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.