Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0011662

Physical Location & Seq

Genomic Coordinates Forward (+)

22170085 .. 22170732

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1107900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCGAAGAAGAGCAAGGGAAGGCAAAAGGTGGAGATGGTCAAGATGGCCAATGAGAGTAATCTCCAAGTGACCTTCTCGAAGCGAAGGTCTGGCCTTTTCAAGAAGGCCAGTGAGCTGTGCACTCTCTGTGGTGCTGAGGTGGGCATCATTGTCTTCTCGCCGGGCAGAAGGGTCTTTTCCTTTGGCCACCCGAGTGTGGAGGCGGTCATGGACCGATTCCTCTCCCGTAACCCATTCAATCCCCACCTTCACCCACCCTCTGGCACTATGCAGCTAATTGAGGCCCACCGCAACGCCACTGTGCGGGAGCTCAATACCGACCTGACTCAAGTCATGAACCAACTTGAGGCTGAGAAGAAGCGCCGCGATCAGCTGAACCAGATGACGAGGGTGAGCCAGGCTCAGTGCTGGTGGGAGGCTCCTGTGGATGAGATGCAGATGCCACAGTTGGACCAGCTGAAGAGTTCCCTTGTGGATCTGAAGATGAACATGACGAAACAGGCTGATAGGGTTTTGATTCAGAACACATTGAACCCTAACAGCCAGTTTTTTGTGGGGAGCTCAAGTCAGCAACCTGTTATGCCTCCTCACAACCTTCCCCATCCCAATGCATGGAACCACCCAGGACATGGACGCTTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009553 GO:0009657 GO:0009658 GO:0009791 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048316 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051049 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

216

Amino Acids

24.49

Weight (kDa)

9.84

Isoelectric Point (pI)

50.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	15 - 62	2.4e-24	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36590 AT5G60440
fragaria_vesca	FvH4_2g03030
malus_domestica	MD05G1107900.v1.1 MD05G1114100.v1.1 MD10G1112300.v1.1
prunus_persica	Prupe.8G151900_v2.0.a1 Prupe.8G158400_v2.0.a1 Prupe.8G158500_v2.0.a1
pyrus_communis	pycom05g10880
rosa_chinensis	RchiOBHm_Chr6g0247821
rosa_laevigata	RLG00000015176
rosa_multiflora	Rmu_sc0001048.1_g000003
rosa_roxburghii	Rroxscaffold_180G00433220 Rroxscaffold_7G00213620
rosa_rugosa	Rorug05G0529300
rosa_samantha	Rh6AG044000 Rh6BG038700 Rh6CG037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	263, 615, 632
AccII	CGCG	1 cut(s)	369
AciI	CCGC	4 cut(s)	206, 292, 307, 367
AclWI	GGATC	1 cut(s)	486
AcoI	YGGCCR	2 cut(s)	48, 187
AcuI	CTGAAG	2 cut(s)	482, 503
AfiI	CCNNNNNNNGG	6 cut(s)	199, 263, 306, 349, 615, 632
AgsI	TTSAA	3 cut(s)	103, 241, 535
AjnI	CCWGG	2 cut(s)	399, 625
AleI	CACNNNNGTG	1 cut(s)	195
AluBI	AGCT	6 cut(s)	118, 277, 313, 376, 460, 564
AluI	AGCT	6 cut(s)	118, 277, 313, 376, 460, 564
Alw21I	GWGCWC	3 cut(s)	125, 315, 566
Alw44I	GTGCAC	1 cut(s)	121
AlwI	GGATC	1 cut(s)	486
Ama87I	CYCGRG	1 cut(s)	193
AoxI	GGCC	5 cut(s)	48, 94, 108, 187, 285
ApaLI	GTGCAC	1 cut(s)	121
ApeKI	GCWGC	1 cut(s)	274
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
AspLEI	GCGC	1 cut(s)	366
AspS9I	GGNCC	3 cut(s)	214, 286, 454
AsuC2I	CCSGG	1 cut(s)	165
AsuHPI	GGTGA	2 cut(s)	245, 406
AvaI	CYCGRG	1 cut(s)	193
AvaII	GGWCC	2 cut(s)	214, 454
BaeGI	GKGCMC	1 cut(s)	125
BalI	TGGCCA	2 cut(s)	50, 189
BanII	GRGCYC	2 cut(s)	315, 566
BbsI	GAAGAC	1 cut(s)	148
Bbv12I	GWGCWC	3 cut(s)	125, 315, 566
BbvCI	CCTCAGC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	3 cut(s)	31, 40, 612
BciT130I	CCWGG	2 cut(s)	401, 627
BcnI	CCSGG	1 cut(s)	165
BfoI	RGCGCY	1 cut(s)	367
BisI	GCNGC	2 cut(s)	275, 367
BlsI	GCNGC	2 cut(s)	276, 368
Bme1390I	CCNGG	3 cut(s)	165, 401, 627
Bme18I	GGWCC	2 cut(s)	214, 454
BmeT110I	CYCGRG	1 cut(s)	193
BmgT120I	GGNCC	3 cut(s)	214, 286, 454
BmiI	GGNNCC	2 cut(s)	423, 620
BmrFI	CCNGG	3 cut(s)	165, 401, 627
BmsI	GCATC	3 cut(s)	156, 426, 432
BoxI	GACNNNNGTC	1 cut(s)	332
BpiI	GAAGAC	1 cut(s)	148
BplI	GAGNNNNNCTC	2 cut(s)	388, 420
Bpu10I	CCTNAGC	1 cut(s)	138
BpuEI	CTTGAG	3 cut(s)	315, 368, 550
BpuMI	CCSGG	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	625
BsaXI	ACNNNNNCTCC	2 cut(s)	553, 583
Bsc4I	CCNNNNNNNGG	6 cut(s)	199, 263, 306, 349, 615, 632
Bse1I	ACTGG	2 cut(s)	111, 547
BseBI	CCWGG	2 cut(s)	401, 627
BseDI	CCNNGG	1 cut(s)	625
BseGI	GGATG	2 cut(s)	436, 604
BseLI	CCNNNNNNNGG	6 cut(s)	199, 263, 306, 349, 615, 632
BseMII	CTCAG	3 cut(s)	129, 345, 419
BseNI	ACTGG	2 cut(s)	111, 547
BseRI	GAGGAG	1 cut(s)	579
BseSI	GKGCMC	1 cut(s)	125
BseXI	GCAGC	1 cut(s)	286
Bsh1236I	CGCG	1 cut(s)	369
BshFI	GGCC	5 cut(s)	50, 96, 110, 189, 287
BsiHKAI	GWGCWC	3 cut(s)	125, 315, 566
BsiHKCI	CYCGRG	1 cut(s)	193
BsiSI	CCGG	1 cut(s)	164
BslI	CCNNNNNNNGG	6 cut(s)	199, 263, 306, 349, 615, 632
BsnI	GGCC	5 cut(s)	50, 96, 110, 189, 287
BsoBI	CYCGRG	1 cut(s)	193
Bsp1286I	GDGCHC	3 cut(s)	125, 315, 566
Bsp143I	GATC	2 cut(s)	370, 478
BspACI	CCGC	4 cut(s)	206, 292, 307, 367
BspANI	GGCC	5 cut(s)	50, 96, 110, 189, 287
BspCNI	CTCAG	3 cut(s)	130, 346, 418
BspFNI	CGCG	1 cut(s)	369
BspHI	TCATGA	1 cut(s)	336
BspLI	GGNNCC	2 cut(s)	423, 620
BspPI	GGATC	1 cut(s)	486
BspQI	GCTCTTC	1 cut(s)	5
BsrI	ACTGG	2 cut(s)	111, 547
BssECI	CCNNGG	1 cut(s)	625
BssMI	GATC	2 cut(s)	370, 478
Bst2UI	CCWGG	2 cut(s)	401, 627
Bst4CI	ACNGT	2 cut(s)	304, 450
Bst6I	CTCTTC	2 cut(s)	5, 458
BstDEI	CTNAG	3 cut(s)	138, 354, 405
BstF5I	GGATG	2 cut(s)	436, 604
BstFNI	CGCG	1 cut(s)	369
BstH2I	RGCGCY	1 cut(s)	367
BstHHI	GCGC	1 cut(s)	366
BstKTI	GATC	2 cut(s)	373, 481
BstMBI	GATC	2 cut(s)	370, 478
BstNI	CCWGG	2 cut(s)	401, 627
BstPAI	GACNNNNGTC	1 cut(s)	332
BstSCI	CCNGG	3 cut(s)	163, 399, 625
BstSLI	GKGCMC	1 cut(s)	125
BstUI	CGCG	1 cut(s)	369
BstV1I	GCAGC	1 cut(s)	286
BstV2I	GAAGAC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	478
BsuRI	GGCC	5 cut(s)	50, 96, 110, 189, 287
BtsCI	GGATG	2 cut(s)	436, 604
BtsIMutI	CAGTG	3 cut(s)	118, 300, 413
CciI	TCATGA	1 cut(s)	336
CfoI	GCGC	1 cut(s)	366
Cfr13I	GGNCC	3 cut(s)	214, 286, 454
CviAII	CATG	5 cut(s)	211, 337, 493, 615, 632
DdeI	CTNAG	3 cut(s)	138, 354, 405
DpnI	GATC	2 cut(s)	372, 480
DpnII	GATC	2 cut(s)	370, 478
EaeI	YGGCCR	2 cut(s)	48, 187
Eam1104I	CTCTTC	2 cut(s)	5, 458
EarI	CTCTTC	2 cut(s)	5, 458
Ecl136II	GAGCTC	2 cut(s)	313, 564
Eco24I	GRGCYC	2 cut(s)	315, 566
Eco47I	GGWCC	2 cut(s)	214, 454
Eco53kI	GAGCTC	2 cut(s)	313, 564
Eco57I	CTGAAG	2 cut(s)	482, 503
Eco88I	CYCGRG	1 cut(s)	193
EcoICRI	GAGCTC	2 cut(s)	313, 564
EcoRII	CCWGG	2 cut(s)	399, 625
EcoT22I	ATGCAT	1 cut(s)	616
EcoT38I	GRGCYC	2 cut(s)	315, 566
FaeI	CATG	5 cut(s)	214, 340, 496, 618, 635
FaiI	YATR	7 cut(s)	212, 272, 338, 494, 584, 616, 633
FatI	CATG	5 cut(s)	210, 336, 492, 614, 631
FauI	CCCGC	1 cut(s)	300
Fnu4HI	GCNGC	2 cut(s)	275, 367
FokI	GGATG	2 cut(s)	443, 591
FriOI	GRGCYC	2 cut(s)	315, 566
Fsp4HI	GCNGC	2 cut(s)	275, 367
GlaI	GCGC	1 cut(s)	365
GluI	GCNGC	2 cut(s)	275, 367
HaeII	RGCGCY	1 cut(s)	367
HaeIII	GGCC	5 cut(s)	50, 96, 110, 189, 287
HapII	CCGG	1 cut(s)	164
HhaI	GCGC	1 cut(s)	366
Hin1II	CATG	5 cut(s)	214, 340, 496, 618, 635
Hin6I	GCGC	1 cut(s)	364
HinP1I	GCGC	1 cut(s)	364
HinfI	GANTC	3 cut(s)	219, 328, 520
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	2 cut(s)	245, 406
Hpy166II	GTNNAC	1 cut(s)	123
Hpy188I	TCNGA	3 cut(s)	483, 525, 647
Hpy188III	TCNNGA	4 cut(s)	43, 79, 103, 337
Hpy8I	GTNNAC	1 cut(s)	123
HpyAV	CCTTC	7 cut(s)	15, 81, 85, 100, 165, 260, 608
HpyCH4III	ACNGT	2 cut(s)	304, 450
HpyCH4V	TGCA	4 cut(s)	123, 274, 439, 614
HpyF3I	CTNAG	3 cut(s)	138, 354, 405
Hsp92II	CATG	5 cut(s)	214, 340, 496, 618, 635
HspAI	GCGC	1 cut(s)	364
Kzo9I	GATC	2 cut(s)	370, 478
LguI	GCTCTTC	1 cut(s)	5
LmnI	GCTCC	3 cut(s)	310, 427, 561
Lsp1109I	GCAGC	1 cut(s)	286
LweI	GCATC	3 cut(s)	156, 426, 432
MaeIII	GTNAC	2 cut(s)	70, 230
MalI	GATC	2 cut(s)	372, 480
MboI	GATC	2 cut(s)	370, 478
MboII	GAAGA	6 cut(s)	19, 22, 148, 370, 475, 496
MflI	RGATCY	1 cut(s)	478
MhlI	GDGCHC	3 cut(s)	125, 315, 566
MlsI	TGGCCA	2 cut(s)	50, 189
MluCI	AATT	1 cut(s)	279
MluNI	TGGCCA	2 cut(s)	50, 189
MlyI	GAGTC	1 cut(s)	322
MmeI	TCCRAC	1 cut(s)	432
Mox20I	TGGCCA	2 cut(s)	50, 189
Mph1103I	ATGCAT	1 cut(s)	616
MscI	TGGCCA	2 cut(s)	50, 189
MslI	CAYNNNNRTG	2 cut(s)	195, 609
Msp20I	TGGCCA	2 cut(s)	50, 189
MspA1I	CMGCKG	2 cut(s)	376, 460
MspI	CCGG	1 cut(s)	164
MspR9I	CCNGG	3 cut(s)	165, 401, 627
MvaI	CCWGG	2 cut(s)	401, 627
MvnI	CGCG	1 cut(s)	369
NciI	CCSGG	1 cut(s)	165
NdeII	GATC	2 cut(s)	370, 478
NlaIII	CATG	5 cut(s)	214, 340, 496, 618, 635
NlaIV	GGNNCC	2 cut(s)	423, 620
NmuCI	GTSAC	1 cut(s)	70
NsiI	ATGCAT	1 cut(s)	616
OliI	CACNNNNGTG	1 cut(s)	195
PagI	TCATGA	1 cut(s)	336
PciSI	GCTCTTC	1 cut(s)	5
PfeI	GAWTC	2 cut(s)	219, 520
PflMI	CCANNNNNTGG	3 cut(s)	263, 615, 632
PkrI	GCNGC	2 cut(s)	276, 368
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PshAI	GACNNNNGTC	1 cut(s)	332
Psp124BI	GAGCTC	2 cut(s)	315, 566
Psp6I	CCWGG	2 cut(s)	399, 625
PspGI	CCWGG	2 cut(s)	399, 625
PspN4I	GGNNCC	2 cut(s)	423, 620
PspPI	GGNCC	3 cut(s)	214, 286, 454
PsuI	RGATCY	1 cut(s)	478
PvuII	CAGCTG	2 cut(s)	376, 460
RseI	CAYNNNNRTG	2 cut(s)	195, 609
SacI	GAGCTC	2 cut(s)	315, 566
SapI	GCTCTTC	1 cut(s)	5
SatI	GCNGC	2 cut(s)	275, 367
Sau3AI	GATC	2 cut(s)	370, 478
Sau96I	GGNCC	3 cut(s)	214, 286, 454
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	3 cut(s)	165, 401, 627
SduI	GDGCHC	3 cut(s)	125, 315, 566
SfaNI	GCATC	3 cut(s)	156, 426, 432
SinI	GGWCC	2 cut(s)	214, 454
SmiMI	CAYNNNNRTG	2 cut(s)	195, 609
SmlI	CTYRAG	3 cut(s)	330, 347, 565
SmoI	CTYRAG	3 cut(s)	330, 347, 565
Sse9I	AATT	1 cut(s)	279
SsiI	CCGC	4 cut(s)	206, 292, 307, 367
SstI	GAGCTC	2 cut(s)	315, 566
StyD4I	CCNGG	3 cut(s)	163, 399, 625
TaaI	ACNGT	2 cut(s)	304, 450
TaqI	TCGA	1 cut(s)	80
TaqII	GACCGA	1 cut(s)	231
TasI	AATT	1 cut(s)	279
TauI	GCSGC	1 cut(s)	369
TfiI	GAWTC	2 cut(s)	219, 520
TscAI	CASTG	3 cut(s)	118, 307, 413
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	1 cut(s)	274
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	2 cut(s)	353, 503
TspRI	CASTG	3 cut(s)	118, 307, 413
Van91I	CCANNNNNTGG	3 cut(s)	263, 615, 632
VneI	GTGCAC	1 cut(s)	121
VpaK11BI	GGWCC	2 cut(s)	214, 454
XcmI	CCANNNNNNNNNTGG	1 cut(s)	629
Zsp2I	ATGCAT	1 cut(s)	616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.