Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0011662

Physical Location & Seq

Genomic Coordinates Forward (+)

16511563 .. 16512219

Gene Structure 657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G151900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCGAGGAAGAGCAAGGGTAGGCAAAAGGTGGAGATGGTCAAGATGGCCAATGAGAGCAACCTCCAAGTGACCTTCTCAAAGCGCAGGTCTGGTCTCTTCAAGAAGGCCAGTGAGCTTTGCACTTTGTGTGGTGCTGAGGTGGCCATCATCGTCTTCTCCCCGGGGCGAAAGGTCTTTTCCTTCGGTCACCCCTGCGTGGAGACTCTCATTGATCGGTACCTTTCTCGAAACCCGCCTCATCACCATCACCACCAAAACTCCGGCACAATGCAGCTCATTGAGGCTCACCGCAATGCCAATGTGCGTGAGCTCAACGGCGAGTTGACTCAGATCTCGAATCAACTCGAGGTTGAGAAGAAGCGTGGGGATGAGCTGAACCAGGTGAAGAAGGTGACTCAGGCTCAATGCTGGTGGGAGGGGCCATTGGAAGGGATGGAGATGTCACAGCTGGAGCAGCTCAAGACCTCTCTTGAGGAGCTGAAGAAGAATGTGGCCAGACAGGCTGATAGGGTTTTGATTCAAAACACAAACCCTAGCCAATTCTTTGTGGGGAGTAGTTCCAGTCATCCCAATGTTGGGTTCAATGGAAATCATGTTATGCCTCCTCATCTTCCCCCCCATGCATGGAATCCTGGATATGGACGCTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009553 GO:0009657 GO:0009658 GO:0009791 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048316 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051049 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

219

Amino Acids

24.72

Weight (kDa)

9.48

Isoelectric Point (pI)

33.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36590 AT5G60440
fragaria_vesca	FvH4_2g03030
malus_domestica	MD05G1107900.v1.1 MD05G1114100.v1.1 MD10G1112300.v1.1
prunus_persica	Prupe.8G151900_v2.0.a1 Prupe.8G158400_v2.0.a1 Prupe.8G158500_v2.0.a1
pyrus_communis	pycom05g10880
rosa_chinensis	RchiOBHm_Chr6g0247821
rosa_laevigata	RLG00000015176
rosa_multiflora	Rmu_sc0001048.1_g000003
rosa_roxburghii	Rroxscaffold_180G00433220 Rroxscaffold_7G00213620
rosa_rugosa	Rorug05G0529300
rosa_samantha	Rh6AG044000 Rh6BG038700 Rh6CG037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	78
Acc65I	GGTACC	1 cut(s)	219
AccB1I	GGYRCC	1 cut(s)	219
AciI	CCGC	2 cut(s)	236, 292
AcoI	YGGCCR	3 cut(s)	48, 144, 495
AcuI	CTGAAG	1 cut(s)	503
AdeI	CACNNNGTG	1 cut(s)	129
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	6 cut(s)	199, 431, 578, 579, 627, 641
AgsI	TTSAA	3 cut(s)	103, 524, 586
AjnI	CCWGG	2 cut(s)	381, 634
AjuI	GAANNNNNNNTTGG	2 cut(s)	566, 598
AluBI	AGCT	7 cut(s)	118, 277, 313, 376, 451, 460, 481
AluI	AGCT	7 cut(s)	118, 277, 313, 376, 451, 460, 481
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	2 cut(s)	101, 197
Ama87I	CYCGRG	2 cut(s)	163, 347
AoxI	GGCC	5 cut(s)	48, 108, 144, 422, 495
ApeKI	GCWGC	2 cut(s)	274, 457
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
Asp718I	GGTACC	1 cut(s)	219
AspLEI	GCGC	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	422
AsuC2I	CCSGG	2 cut(s)	164, 165
AsuHPI	GGTGA	6 cut(s)	182, 236, 242, 281, 397, 406
AvaI	CYCGRG	2 cut(s)	163, 347
BalI	TGGCCA	3 cut(s)	50, 146, 497
BanI	GGYRCC	1 cut(s)	219
BanII	GRGCYC	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	315
BbvCI	CCTCAGC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	286, 469
BccI	CCATC	5 cut(s)	31, 40, 155, 255, 430
BceAI	ACGGC	1 cut(s)	334
BciT130I	CCWGG	2 cut(s)	383, 636
BcnI	CCSGG	2 cut(s)	164, 165
BcoDI	GTCTC	2 cut(s)	101, 197
BfaI	CTAG	1 cut(s)	537
BfuAI	ACCTGC	1 cut(s)	78
BglI	GCCNNNNNGGC	1 cut(s)	503
BglII	AGATCT	1 cut(s)	333
BisI	GCNGC	2 cut(s)	275, 458
BlsI	GCNGC	2 cut(s)	276, 459
Bme1390I	CCNGG	4 cut(s)	164, 165, 383, 636
BmeT110I	CYCGRG	2 cut(s)	163, 347
BmgT120I	GGNCC	1 cut(s)	422
BmiI	GGNNCC	2 cut(s)	221, 423
BmrFI	CCNGG	4 cut(s)	164, 165, 383, 636
BpiI	GAAGAC	1 cut(s)	148
BpmI	CTGGAG	1 cut(s)	473
Bpu10I	CCTNAGC	1 cut(s)	138
BpuEI	CTTGAG	2 cut(s)	446, 494
BpuMI	CCSGG	2 cut(s)	164, 165
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	3 cut(s)	162, 163, 164
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	6 cut(s)	199, 431, 578, 579, 627, 641
Bse1I	ACTGG	2 cut(s)	111, 564
Bse3DI	GCAATG	1 cut(s)	301
BseBI	CCWGG	2 cut(s)	383, 636
BseDI	CCNNGG	3 cut(s)	162, 163, 164
BseGI	GGATG	3 cut(s)	376, 441, 568
BseLI	CCNNNNNNNGG	6 cut(s)	199, 431, 578, 579, 627, 641
BseMI	GCAATG	1 cut(s)	301
BseMII	CTCAG	3 cut(s)	129, 344, 413
BseNI	ACTGG	2 cut(s)	111, 564
BseRI	GAGGAG	2 cut(s)	491, 597
BseXI	GCAGC	2 cut(s)	286, 469
BshFI	GGCC	5 cut(s)	50, 110, 146, 424, 497
BshNI	GGYRCC	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	315
BsiHKCI	CYCGRG	2 cut(s)	163, 347
BsiSI	CCGG	2 cut(s)	164, 264
BslI	CCNNNNNNNGG	6 cut(s)	199, 431, 578, 579, 627, 641
BsmAI	GTCTC	2 cut(s)	101, 197
BsnI	GGCC	5 cut(s)	50, 110, 146, 424, 497
Bso31I	GGTCTC	1 cut(s)	101
BsoBI	CYCGRG	2 cut(s)	163, 347
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	2 cut(s)	214, 333
BspACI	CCGC	2 cut(s)	236, 292
BspANI	GGCC	5 cut(s)	50, 110, 146, 424, 497
BspCNI	CTCAG	3 cut(s)	130, 343, 412
BspLI	GGNNCC	2 cut(s)	221, 423
BspMI	ACCTGC	1 cut(s)	78
BspQI	GCTCTTC	1 cut(s)	5
BspT107I	GGYRCC	1 cut(s)	219
BspTNI	GGTCTC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	301
BsrI	ACTGG	2 cut(s)	111, 564
BssECI	CCNNGG	3 cut(s)	162, 163, 164
BssMI	GATC	2 cut(s)	214, 333
Bst2UI	CCWGG	2 cut(s)	383, 636
Bst6I	CTCTTC	2 cut(s)	5, 104
BstDEI	CTNAG	3 cut(s)	138, 330, 399
BstEII	GGTNACC	1 cut(s)	188
BstF5I	GGATG	3 cut(s)	376, 441, 568
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	2 cut(s)	217, 336
BstMAI	GTCTC	2 cut(s)	101, 197
BstMBI	GATC	2 cut(s)	214, 333
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 457, 503
BstNI	CCWGG	2 cut(s)	383, 636
BstPI	GGTNACC	1 cut(s)	188
BstSCI	CCNGG	4 cut(s)	162, 163, 381, 634
BstV1I	GCAGC	2 cut(s)	286, 469
BstV2I	GAAGAC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	333
BstYI	RGATCY	1 cut(s)	333
BsuRI	GGCC	5 cut(s)	50, 110, 146, 424, 497
BtsCI	GGATG	3 cut(s)	376, 441, 568
BtsIMutI	CAGTG	1 cut(s)	118
BveI	ACCTGC	1 cut(s)	78
CfoI	GCGC	1 cut(s)	87
Cfr13I	GGNCC	1 cut(s)	422
Cfr9I	CCCGGG	1 cut(s)	163
CsiI	ACCWGGT	1 cut(s)	381
Csp6I	GTAC	1 cut(s)	220
CspCI	CAANNNNNGTGG	2 cut(s)	395, 430
CviAII	CATG	3 cut(s)	596, 623, 627
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	3 cut(s)	138, 330, 399
DpnI	GATC	2 cut(s)	216, 335
DpnII	GATC	2 cut(s)	214, 333
DraIII	CACNNNGTG	1 cut(s)	129
EaeI	YGGCCR	3 cut(s)	48, 144, 495
Eam1104I	CTCTTC	2 cut(s)	5, 104
EarI	CTCTTC	2 cut(s)	5, 104
Ecl136II	GAGCTC	1 cut(s)	313
Eco24I	GRGCYC	1 cut(s)	315
Eco31I	GGTCTC	1 cut(s)	101
Eco53kI	GAGCTC	1 cut(s)	313
Eco57I	CTGAAG	1 cut(s)	503
Eco88I	CYCGRG	2 cut(s)	163, 347
Eco91I	GGTNACC	1 cut(s)	188
EcoICRI	GAGCTC	1 cut(s)	313
EcoO65I	GGTNACC	1 cut(s)	188
EcoRII	CCWGG	2 cut(s)	381, 634
EcoT22I	ATGCAT	1 cut(s)	628
EcoT38I	GRGCYC	1 cut(s)	315
FaeI	CATG	3 cut(s)	599, 626, 630
FaiI	YATR	5 cut(s)	597, 602, 624, 628, 642
FatI	CATG	3 cut(s)	595, 622, 626
FauI	CCCGC	1 cut(s)	243
Fnu4HI	GCNGC	2 cut(s)	275, 458
FokI	GGATG	3 cut(s)	383, 448, 555
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	2 cut(s)	275, 458
FspBI	CTAG	1 cut(s)	537
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	2 cut(s)	275, 458
GsuI	CTGGAG	1 cut(s)	473
HaeIII	GGCC	5 cut(s)	50, 110, 146, 424, 497
HapII	CCGG	2 cut(s)	164, 264
HhaI	GCGC	1 cut(s)	87
Hin1II	CATG	3 cut(s)	599, 626, 630
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HincII	GTYRAC	1 cut(s)	327
HindII	GTYRAC	1 cut(s)	327
HinfI	GANTC	6 cut(s)	205, 328, 340, 397, 520, 631
HpaII	CCGG	2 cut(s)	164, 264
HphI	GGTGA	6 cut(s)	182, 236, 242, 281, 397, 406
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	2 cut(s)	333, 656
Hpy188III	TCNNGA	6 cut(s)	43, 103, 228, 337, 463, 473
Hpy8I	GTNNAC	1 cut(s)	327
HpyAV	CCTTC	5 cut(s)	85, 100, 193, 385, 425
HpyCH4V	TGCA	3 cut(s)	123, 274, 626
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 457, 503
HpyF3I	CTNAG	3 cut(s)	138, 330, 399
Hsp92II	CATG	3 cut(s)	599, 626, 630
HspAI	GCGC	1 cut(s)	85
KpnI	GGTACC	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	214, 333
LguI	GCTCTTC	1 cut(s)	5
LmnI	GCTCC	2 cut(s)	454, 478
Lsp1109I	GCAGC	2 cut(s)	286, 469
MabI	ACCWGGT	1 cut(s)	381
MaeI	CTAG	1 cut(s)	537
MaeIII	GTNAC	4 cut(s)	70, 188, 394, 444
MalI	GATC	2 cut(s)	216, 335
MboI	GATC	2 cut(s)	214, 333
MboII	GAAGA	9 cut(s)	22, 91, 148, 370, 400, 496, 499, 605, 643
MflI	RGATCY	1 cut(s)	333
MhlI	GDGCHC	1 cut(s)	315
MlsI	TGGCCA	3 cut(s)	50, 146, 497
MluCI	AATT	1 cut(s)	542
MluNI	TGGCCA	3 cut(s)	50, 146, 497
MlyI	GAGTC	3 cut(s)	199, 322, 391
Mox20I	TGGCCA	3 cut(s)	50, 146, 497
Mph1103I	ATGCAT	1 cut(s)	628
MscI	TGGCCA	3 cut(s)	50, 146, 497
MslI	CAYNNNNRTG	2 cut(s)	294, 573
Msp20I	TGGCCA	3 cut(s)	50, 146, 497
MspA1I	CMGCKG	1 cut(s)	451
MspI	CCGG	2 cut(s)	164, 264
MspR9I	CCNGG	4 cut(s)	164, 165, 383, 636
MvaI	CCWGG	2 cut(s)	383, 636
MwoI	GCNNNNNNNGC	3 cut(s)	143, 457, 503
NciI	CCSGG	2 cut(s)	164, 165
NdeII	GATC	2 cut(s)	214, 333
NlaIII	CATG	3 cut(s)	599, 626, 630
NlaIV	GGNNCC	2 cut(s)	221, 423
NmuCI	GTSAC	4 cut(s)	70, 188, 394, 444
NsiI	ATGCAT	1 cut(s)	628
PaeR7I	CTCGAG	1 cut(s)	347
PciSI	GCTCTTC	1 cut(s)	5
PfeI	GAWTC	3 cut(s)	340, 520, 631
PfoI	TCCNGGA	1 cut(s)	634
PkrI	GCNGC	2 cut(s)	276, 459
PleI	GAGTC	3 cut(s)	199, 322, 391
PpsI	GAGTC	3 cut(s)	199, 322, 391
Psp124BI	GAGCTC	1 cut(s)	315
Psp6I	CCWGG	2 cut(s)	381, 634
PspEI	GGTNACC	1 cut(s)	188
PspGI	CCWGG	2 cut(s)	381, 634
PspN4I	GGNNCC	2 cut(s)	221, 423
PspPI	GGNCC	1 cut(s)	422
PspXI	VCTCGAGB	1 cut(s)	347
PsuI	RGATCY	1 cut(s)	333
PvuII	CAGCTG	1 cut(s)	451
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	2 cut(s)	294, 573
SacI	GAGCTC	1 cut(s)	315
SapI	GCTCTTC	1 cut(s)	5
SatI	GCNGC	2 cut(s)	275, 458
Sau3AI	GATC	2 cut(s)	214, 333
Sau96I	GGNCC	1 cut(s)	422
SchI	GAGTC	3 cut(s)	199, 322, 391
ScrFI	CCNGG	4 cut(s)	164, 165, 383, 636
SduI	GDGCHC	1 cut(s)	315
SexAI	ACCWGGT	1 cut(s)	381
Sfr274I	CTCGAG	1 cut(s)	347
SlaI	CTCGAG	1 cut(s)	347
SmaI	CCCGGG	1 cut(s)	165
SmiMI	CAYNNNNRTG	2 cut(s)	294, 573
SmlI	CTYRAG	3 cut(s)	347, 461, 473
SmoI	CTYRAG	3 cut(s)	347, 461, 473
Sse9I	AATT	1 cut(s)	542
SsiI	CCGC	2 cut(s)	236, 292
SspMI	CTAG	1 cut(s)	537
SstI	GAGCTC	1 cut(s)	315
StyD4I	CCNGG	4 cut(s)	162, 163, 381, 634
TaqI	TCGA	3 cut(s)	229, 338, 348
TaqII	GACCGA	1 cut(s)	176
TasI	AATT	1 cut(s)	542
TfiI	GAWTC	3 cut(s)	340, 520, 631
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	4 cut(s)	70, 188, 394, 444
TseI	GCWGC	2 cut(s)	274, 457
Tsp45I	GTSAC	4 cut(s)	70, 188, 394, 444
TspMI	CCCGGG	1 cut(s)	163
TspRI	CASTG	1 cut(s)	118
XhoI	CTCGAG	1 cut(s)	347
XmaI	CCCGGG	1 cut(s)	163
XspI	CTAG	1 cut(s)	537
Zsp2I	ATGCAT	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.