Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0011662

Physical Location & Seq

Genomic Coordinates Reverse (-)

16815123 .. 16816250

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G158400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGAGAATGAGACCAATCTCCAAGTCACATTCTCCAAGAGAAGGGCAGGACTTTTCAAAAAGGCCAGCGAGCTCAGTACCCTGTGTGGTACAGAGCTCGGCCTCATTGTCTTCTCGCCAGGCAAGAAGGCCTTTTGCTTTGGCCACCCGTCCATCGAGGAGGTGTTGGACAAGTATGAGGGCAGACCCTCTCGTCAGCCCCTTAATCACGATATGCAGCAGATCGTTGAGGCGTGCTCCCACACGACTCTGAATGAGCTCAACGCTGAGCTCACACAGGTGATGGAGCGCATCGAGGGCGAAAGGAAGCGGGGGGAAGAGCTGACCCAGTTATTGAAGGCCAGCCAAGCGGAGTGCGGGTTGCAGGGACCAGTGGAGGAGTTGGACTTGGACACGATGGAGATTCTGAGGGCTTCTCTTATGCAGTTGAGGTCCAAAGTGGCTGATCAGGCTAAACAGAAACTTGCTGCAGCCAAAACTGCAAACCCTCCTCACAATCCTAATGTTTATGTGGGGAGCTCCTCTTCTAGTGCTGCTGCCCAAAGTGCAAACCCTGCTCAAAATAATTATTTTGTGGGGAGCTCCTCTTCTAGTGCTGCTGCCCAAAGTGCAAACCCTGCTCACAATAATTATTTTGTGGGGAGATCCTCTTCTAGTGCTGCTGCCCAAAGTGCAAACCCTGCTCACAATAATTTTTTTGTGGGGAGCTCTTCTTCCAGTGCTGCTGCTGGGCCTTCTGGCCTCCAAGGTTTGGCTAATCCTGAGATTAACAATGTTGGGTTCAATTTTAATGGAAATGATTTTGTTATGCAGGCTCCTGACCAGCCAAACAATTTTGGGTTCAATTTCAATGGAGCTGAGCCTGTTTTGCAGGCTCCTGATCAGCCTAACAATCTTGGCTTCAATTTCAATGGAGCTGGGCCTGTTATGCAGGCTCCTCCTGATCAGCCTAACAATCTTGGCTTCAATTTCAATGGACCTGATCATCCTAACAATCTTGGTTTCAATTTCAATGGAGCTGAGTCTATTATGCAGGCTCCTCCAGACCAGCCTAACAATGTTGGGTTCAATGGCGATCCTATGTTTCTCAGTGACTGGAACCCTAATCTTGGTGGAGGTTTTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

376

Amino Acids

39.95

Weight (kDa)

4.96

Isoelectric Point (pI)

44.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36590 AT5G60440
fragaria_vesca	FvH4_2g03030
malus_domestica	MD05G1107900.v1.1 MD05G1114100.v1.1 MD10G1112300.v1.1
prunus_persica	Prupe.8G151900_v2.0.a1 Prupe.8G158400_v2.0.a1 Prupe.8G158500_v2.0.a1
pyrus_communis	pycom05g10880
rosa_chinensis	RchiOBHm_Chr6g0247821
rosa_laevigata	RLG00000015176
rosa_multiflora	Rmu_sc0001048.1_g000003
rosa_roxburghii	Rroxscaffold_180G00433220 Rroxscaffold_7G00213620
rosa_rugosa	Rorug05G0529300
rosa_samantha	Rh6AG044000 Rh6BG038700 Rh6CG037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	192
AccB7I	CCANNNNNTGG	1 cut(s)	751
AciI	CCGC	3 cut(s)	310, 350, 357
AclWI	GGATC	2 cut(s)	639, 1070
AcoI	YGGCCR	1 cut(s)	142
AfaI	GTAC	2 cut(s)	79, 91
AfiI	CCNNNNNNNGG	3 cut(s)	42, 751, 1109
AjnI	CCWGG	1 cut(s)	118
AleI	CACNNNNGTG	1 cut(s)	278
Alw21I	GWGCWC	8 cut(s)	75, 99, 239, 261, 273, 521, 584, 710
Alw26I	GTCTC	1 cut(s)	5
AlwI	GGATC	2 cut(s)	639, 1070
AlwNI	CAGNNNCTG	1 cut(s)	1095
AoxI	GGCC	8 cut(s)	63, 100, 129, 142, 339, 731, 739, 920
AspLEI	GCGC	1 cut(s)	291
AspS9I	GGNCC	5 cut(s)	368, 432, 731, 920, 977
AsuHPI	GGTGA	1 cut(s)	292
AvaII	GGWCC	3 cut(s)	368, 432, 977
BalI	TGGCCA	1 cut(s)	144
BanII	GRGCYC	7 cut(s)	75, 99, 261, 273, 521, 584, 710
BbsI	GAAGAC	1 cut(s)	103
Bbv12I	GWGCWC	8 cut(s)	75, 99, 239, 261, 273, 521, 584, 710
BccI	CCATC	3 cut(s)	161, 277, 391
BciT130I	CCWGG	1 cut(s)	120
BclI	TGATCA	4 cut(s)	445, 880, 943, 982
BcoDI	GTCTC	1 cut(s)	5
BfaI	CTAG	3 cut(s)	528, 591, 654
BfmI	CTRYAG	1 cut(s)	468
BlpI	GCTNAGC	2 cut(s)	267, 858
Bme1390I	CCNGG	1 cut(s)	120
Bme18I	GGWCC	3 cut(s)	368, 432, 977
BmgT120I	GGNCC	5 cut(s)	368, 432, 731, 920, 977
BmiI	GGNNCC	6 cut(s)	369, 816, 876, 936, 1038, 1100
BmrFI	CCNGG	1 cut(s)	120
BmrI	ACTGGG	1 cut(s)	322
BmsI	GCATC	1 cut(s)	300
BmuI	ACTGGG	1 cut(s)	322
BpiI	GAAGAC	1 cut(s)	103
BplI	GAGNNNNNCTC	4 cut(s)	221, 253, 400, 432
BpmI	CTGGAG	1 cut(s)	1026
Bpu1102I	GCTNAGC	2 cut(s)	267, 858
BsaI	GGTCTC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	745
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 751, 1109
Bse1I	ACTGG	4 cut(s)	328, 371, 717, 1100
BseBI	CCWGG	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	745
BseGI	GGATG	1 cut(s)	985
BseLI	CCNNNNNNNGG	3 cut(s)	42, 751, 1109
BseMII	CTCAG	7 cut(s)	88, 258, 398, 753, 849, 1011, 1102
BseNI	ACTGG	4 cut(s)	328, 371, 717, 1100
BseRI	GAGGAG	7 cut(s)	173, 392, 480, 511, 574, 927, 1029
BseYI	CCCAGC	2 cut(s)	728, 917
BshFI	GGCC	8 cut(s)	65, 102, 131, 144, 341, 733, 741, 922
BsiHKAI	GWGCWC	8 cut(s)	75, 99, 239, 261, 273, 521, 584, 710
BslFI	GGGAC	1 cut(s)	381
BslI	CCNNNNNNNGG	3 cut(s)	42, 751, 1109
BsmAI	GTCTC	1 cut(s)	5
BsmFI	GGGAC	1 cut(s)	381
BsnI	GGCC	8 cut(s)	65, 102, 131, 144, 341, 733, 741, 922
Bso31I	GGTCTC	1 cut(s)	5
Bsp1286I	GDGCHC	8 cut(s)	75, 99, 239, 261, 273, 521, 584, 710
Bsp143I	GATC	7 cut(s)	222, 445, 644, 880, 943, 982, 1075
Bsp1720I	GCTNAGC	2 cut(s)	267, 858
BspACI	CCGC	3 cut(s)	310, 350, 357
BspANI	GGCC	8 cut(s)	65, 102, 131, 144, 341, 733, 741, 922
BspCNI	CTCAG	7 cut(s)	87, 259, 399, 754, 850, 1012, 1101
BspLI	GGNNCC	6 cut(s)	369, 816, 876, 936, 1038, 1100
BspMAI	CTGCAG	1 cut(s)	472
BspPI	GGATC	2 cut(s)	639, 1070
BspQI	GCTCTTC	2 cut(s)	312, 715
BspTNI	GGTCTC	1 cut(s)	5
BsrI	ACTGG	4 cut(s)	328, 371, 717, 1100
BssECI	CCNNGG	1 cut(s)	745
BssMI	GATC	7 cut(s)	222, 445, 644, 880, 943, 982, 1075
BssT1I	CCWWGG	1 cut(s)	745
Bst2UI	CCWGG	1 cut(s)	120
Bst6I	CTCTTC	5 cut(s)	312, 529, 592, 655, 715
BstAPI	GCANNNNNTGC	3 cut(s)	554, 617, 680
BstC8I	GCNNGC	8 cut(s)	67, 71, 235, 343, 813, 873, 933, 1035
BstDEI	CTNAG	7 cut(s)	74, 267, 407, 762, 858, 1020, 1088
BstF5I	GGATG	1 cut(s)	985
BstHHI	GCGC	1 cut(s)	291
BstKTI	GATC	7 cut(s)	225, 448, 647, 883, 946, 985, 1078
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	7 cut(s)	222, 445, 644, 880, 943, 982, 1075
BstNI	CCWGG	1 cut(s)	120
BstSCI	CCNGG	1 cut(s)	118
BstSFI	CTRYAG	1 cut(s)	468
BstV2I	GAAGAC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	644
BstYI	RGATCY	1 cut(s)	644
BsuRI	GGCC	8 cut(s)	65, 102, 131, 144, 341, 733, 741, 922
BtsCI	GGATG	1 cut(s)	985
BtsIMutI	CAGTG	3 cut(s)	378, 724, 1096
Cac8I	GCNNGC	8 cut(s)	67, 71, 235, 343, 813, 873, 933, 1035
CaiI	CAGNNNCTG	1 cut(s)	1095
CfoI	GCGC	1 cut(s)	291
Cfr13I	GGNCC	5 cut(s)	368, 432, 731, 920, 977
Csp6I	GTAC	2 cut(s)	78, 90
CviQI	GTAC	2 cut(s)	78, 90
DdeI	CTNAG	7 cut(s)	74, 267, 407, 762, 858, 1020, 1088
DpnI	GATC	7 cut(s)	224, 447, 646, 882, 945, 984, 1077
DpnII	GATC	7 cut(s)	222, 445, 644, 880, 943, 982, 1075
DrdI	GACNNNNNNGTC	1 cut(s)	192
DseDI	GACNNNNNNGTC	1 cut(s)	192
EaeI	YGGCCR	1 cut(s)	142
Eam1104I	CTCTTC	5 cut(s)	312, 529, 592, 655, 715
EarI	CTCTTC	5 cut(s)	312, 529, 592, 655, 715
Ecl136II	GAGCTC	7 cut(s)	73, 97, 259, 271, 519, 582, 708
Eco130I	CCWWGG	1 cut(s)	745
Eco147I	AGGCCT	1 cut(s)	131
Eco24I	GRGCYC	7 cut(s)	75, 99, 261, 273, 521, 584, 710
Eco31I	GGTCTC	1 cut(s)	5
Eco47I	GGWCC	3 cut(s)	368, 432, 977
Eco53kI	GAGCTC	7 cut(s)	73, 97, 259, 271, 519, 582, 708
EcoICRI	GAGCTC	7 cut(s)	73, 97, 259, 271, 519, 582, 708
EcoRII	CCWGG	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	745
EcoT38I	GRGCYC	7 cut(s)	75, 99, 261, 273, 521, 584, 710
ErhI	CCWWGG	1 cut(s)	745
FaiI	YATR	8 cut(s)	177, 215, 422, 510, 809, 929, 1031, 1082
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FaqI	GGGAC	1 cut(s)	381
FauI	CCCGC	2 cut(s)	303, 350
FbaI	TGATCA	4 cut(s)	445, 880, 943, 982
FokI	GGATG	1 cut(s)	972
FriOI	GRGCYC	7 cut(s)	75, 99, 261, 273, 521, 584, 710
FspBI	CTAG	3 cut(s)	528, 591, 654
GlaI	GCGC	1 cut(s)	290
GsaI	CCCAGC	2 cut(s)	732, 921
GsuI	CTGGAG	1 cut(s)	1026
HaeIII	GGCC	8 cut(s)	65, 102, 131, 144, 341, 733, 741, 922
HhaI	GCGC	1 cut(s)	291
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HinfI	GANTC	3 cut(s)	247, 403, 1022
HphI	GGTGA	1 cut(s)	292
Hpy188I	TCNGA	2 cut(s)	252, 408
Hpy188III	TCNNGA	6 cut(s)	209, 761, 818, 878, 941, 1043
HpyAV	CCTTC	4 cut(s)	36, 121, 331, 744
HpyF3I	CTNAG	7 cut(s)	74, 267, 407, 762, 858, 1020, 1088
HspAI	GCGC	1 cut(s)	289
Ksp22I	TGATCA	4 cut(s)	445, 880, 943, 982
Kzo9I	GATC	7 cut(s)	222, 445, 644, 880, 943, 982, 1075
LguI	GCTCTTC	2 cut(s)	312, 715
LweI	GCATC	1 cut(s)	300
MaeI	CTAG	3 cut(s)	528, 591, 654
MaeIII	GTNAC	2 cut(s)	25, 1091
MalI	GATC	7 cut(s)	224, 447, 646, 882, 945, 984, 1077
MboI	GATC	7 cut(s)	222, 445, 644, 880, 943, 982, 1075
MboII	GAAGA	7 cut(s)	103, 329, 516, 579, 642, 702, 705
MflI	RGATCY	1 cut(s)	644
MhlI	GDGCHC	8 cut(s)	75, 99, 239, 261, 273, 521, 584, 710
MlsI	TGGCCA	1 cut(s)	144
MluCI	AATT	9 cut(s)	565, 628, 691, 784, 832, 844, 904, 967, 1006
MluNI	TGGCCA	1 cut(s)	144
MlyI	GAGTC	2 cut(s)	241, 1031
MmeI	TCCRAC	2 cut(s)	147, 363
Mox20I	TGGCCA	1 cut(s)	144
MscI	TGGCCA	1 cut(s)	144
MseI	TTAA	3 cut(s)	204, 768, 789
MslI	CAYNNNNRTG	1 cut(s)	278
Msp20I	TGGCCA	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	120
NdeII	GATC	7 cut(s)	222, 445, 644, 880, 943, 982, 1075
NlaIV	GGNNCC	6 cut(s)	369, 816, 876, 936, 1038, 1100
NmeAIII	GCCGAG	1 cut(s)	78
NmuCI	GTSAC	2 cut(s)	25, 1091
OliI	CACNNNNGTG	1 cut(s)	278
PceI	AGGCCT	1 cut(s)	131
PciSI	GCTCTTC	2 cut(s)	312, 715
PfeI	GAWTC	1 cut(s)	403
PflMI	CCANNNNNTGG	1 cut(s)	751
PleI	GAGTC	2 cut(s)	241, 1030
PpsI	GAGTC	2 cut(s)	241, 1030
Psp124BI	GAGCTC	7 cut(s)	75, 99, 261, 273, 521, 584, 710
Psp6I	CCWGG	1 cut(s)	118
PspFI	CCCAGC	2 cut(s)	728, 917
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	6 cut(s)	369, 816, 876, 936, 1038, 1100
PspPI	GGNCC	5 cut(s)	368, 432, 731, 920, 977
PstI	CTGCAG	1 cut(s)	472
PstNI	CAGNNNCTG	1 cut(s)	1095
PsuI	RGATCY	1 cut(s)	644
RsaI	GTAC	2 cut(s)	79, 91
RsaNI	GTAC	2 cut(s)	78, 90
RseI	CAYNNNNRTG	1 cut(s)	278
SacI	GAGCTC	7 cut(s)	75, 99, 261, 273, 521, 584, 710
SapI	GCTCTTC	2 cut(s)	312, 715
SaqAI	TTAA	3 cut(s)	204, 768, 789
Sau3AI	GATC	7 cut(s)	222, 445, 644, 880, 943, 982, 1075
Sau96I	GGNCC	5 cut(s)	368, 432, 731, 920, 977
SchI	GAGTC	2 cut(s)	241, 1031
ScrFI	CCNGG	1 cut(s)	120
SduI	GDGCHC	8 cut(s)	75, 99, 239, 261, 273, 521, 584, 710
SfaNI	GCATC	1 cut(s)	300
SfcI	CTRYAG	1 cut(s)	468
SinI	GGWCC	3 cut(s)	368, 432, 977
SmiMI	CAYNNNNRTG	1 cut(s)	278
Sse9I	AATT	9 cut(s)	565, 628, 691, 784, 832, 844, 904, 967, 1006
SseBI	AGGCCT	1 cut(s)	131
SsiI	CCGC	3 cut(s)	310, 350, 357
SspMI	CTAG	3 cut(s)	528, 591, 654
SstI	GAGCTC	7 cut(s)	75, 99, 261, 273, 521, 584, 710
StuI	AGGCCT	1 cut(s)	131
StyD4I	CCNGG	1 cut(s)	118
StyI	CCWWGG	1 cut(s)	745
TaqI	TCGA	2 cut(s)	156, 294
TasI	AATT	9 cut(s)	565, 628, 691, 784, 832, 844, 904, 967, 1006
TfiI	GAWTC	1 cut(s)	403
Tru1I	TTAA	3 cut(s)	204, 768, 789
Tru9I	TTAA	3 cut(s)	204, 768, 789
TscAI	CASTG	3 cut(s)	378, 724, 1096
TseFI	GTSAC	2 cut(s)	25, 1091
Tsp45I	GTSAC	2 cut(s)	25, 1091
TspRI	CASTG	3 cut(s)	378, 724, 1096
Van91I	CCANNNNNTGG	1 cut(s)	751
VpaK11BI	GGWCC	3 cut(s)	368, 432, 977
XspI	CTAG	3 cut(s)	528, 591, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.