Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0011662

Physical Location & Seq

Genomic Coordinates Reverse (-)

14345389 .. 14346111

Gene Structure 723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g10880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCTAGGACGAGTAGGGGTCGCCAAAGAGTGCCAATGACAAAGATTACGAATGAGGCTAGTCTCCAAGTCACATTCTCCAAGAGGAGGAATGGCCTTTTCAAAAAGGCCAGTGAGCTCTGCACCTTGTGTGGTGCAGAGATTGCCCTCATGGTCTTCTCACCGGGCAAGAAAGTCTTTTCCTTTGGTCACCCGTGCTTTGAGACGTTGATTGATAGGTTTGAGGGCAGACTCTCACTCGCCCAGCTGACCATGGGTCATGATATGCAACAGATGCTTGAGGCTTACCGGAACGTGAGTTTGAATGTTTTGAGCCAAGACCTCACGAAGGTGATGGTGCTAGTCGACAACGAAAAAAAGCTCGGGGTCAACATAAGCCAAACAATGAAGGAGAGTATGTCAGAGAACTGGTGGGAGCGCCCGTTGGAAGAGATTGAGACCGACAGGCTTGAGTTTTTAAGAACTTATATGGAGGAGCTCGGGTGCAAAGTGAACGAGACTAGAGGCAAAATGCTTTTGCCCCAAGTTTTCGAGACCGCTAATGATAATAATAATTTTTTTGTAGGGAGCTCTTCCTCAAATAGTGCTGCTGGGCCTTATGATCAGATGATGCAGACTTACGCAAATAAGCCTAGTAGTAGCTCTGGTGGTGGGTTGAATGAAAACACTTCTACTTGGCCTTTCAGTGCTTGGAACCCTAGTCTTGGTGGAGGGTTTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009888 GO:0009889 GO:0009960 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

241

Amino Acids

26.93

Weight (kDa)

6.76

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	15 - 62	7.6e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36590 AT5G60440
fragaria_vesca	FvH4_2g03030
malus_domestica	MD05G1107900.v1.1 MD05G1114100.v1.1 MD10G1112300.v1.1
prunus_persica	Prupe.8G151900_v2.0.a1 Prupe.8G158400_v2.0.a1 Prupe.8G158500_v2.0.a1
pyrus_communis	pycom05g10880
rosa_chinensis	RchiOBHm_Chr6g0247821
rosa_laevigata	RLG00000015176
rosa_multiflora	Rmu_sc0001048.1_g000003
rosa_roxburghii	Rroxscaffold_180G00433220 Rroxscaffold_7G00213620
rosa_rugosa	Rorug05G0529300
rosa_samantha	Rh6AG044000 Rh6BG038700 Rh6CG037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	345
AciI	CCGC	1 cut(s)	537
AdeI	CACNNNGTG	1 cut(s)	129
AfiI	CCNNNNNNNGG	3 cut(s)	87, 328, 704
AgsI	TTSAA	3 cut(s)	103, 304, 658
AhdI	GACNNNNNGTC	1 cut(s)	255
AleI	CACNNNNGTG	1 cut(s)	329
AluBI	AGCT	6 cut(s)	118, 247, 361, 478, 570, 642
AluI	AGCT	6 cut(s)	118, 247, 361, 478, 570, 642
Alw21I	GWGCWC	3 cut(s)	120, 480, 572
Alw26I	GTCTC	5 cut(s)	68, 197, 431, 491, 527
Ama87I	CYCGRG	2 cut(s)	362, 479
AoxI	GGCC	4 cut(s)	94, 108, 593, 677
ApeKI	GCWGC	1 cut(s)	587
AspLEI	GCGC	1 cut(s)	420
AspS9I	GGNCC	1 cut(s)	593
AsuC2I	CCSGG	1 cut(s)	165
AsuHPI	GGTGA	3 cut(s)	153, 182, 343
AvaI	CYCGRG	2 cut(s)	362, 479
BanII	GRGCYC	3 cut(s)	120, 480, 572
BbsI	GAAGAC	1 cut(s)	148
Bbv12I	GWGCWC	3 cut(s)	120, 480, 572
BbvI	GCAGC	1 cut(s)	574
BccI	CCATC	1 cut(s)	328
BclI	TGATCA	1 cut(s)	601
BcnI	CCSGG	1 cut(s)	165
BcoDI	GTCTC	5 cut(s)	68, 197, 431, 491, 527
BfaI	CTAG	6 cut(s)	6, 60, 341, 501, 633, 699
BfoI	RGCGCY	1 cut(s)	421
BisI	GCNGC	1 cut(s)	588
BlsI	GCNGC	1 cut(s)	589
Bme1390I	CCNGG	1 cut(s)	165
BmeRI	GACNNNNNGTC	1 cut(s)	255
BmeT110I	CYCGRG	2 cut(s)	362, 479
BmgT120I	GGNCC	1 cut(s)	593
BmiI	GGNNCC	1 cut(s)	695
BmrFI	CCNGG	1 cut(s)	165
BmsI	GCATC	2 cut(s)	264, 600
BpiI	GAAGAC	1 cut(s)	148
BplI	GAGNNNNNCTC	1 cut(s)	702
BpuEI	CTTGAG	2 cut(s)	299, 470
BpuMI	CCSGG	1 cut(s)	165
BsaI	GGTCTC	2 cut(s)	431, 527
BsaJI	CCNNGG	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	288
BsaXI	ACNNNNNCTCC	6 cut(s)	383, 407, 413, 437, 467, 497
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 328, 704
Bse1I	ACTGG	2 cut(s)	111, 413
BseDI	CCNNGG	1 cut(s)	252
BseLI	CCNNNNNNNGG	3 cut(s)	87, 328, 704
BseNI	ACTGG	2 cut(s)	111, 413
BseRI	GAGGAG	2 cut(s)	100, 488
BseXI	GCAGC	1 cut(s)	574
BseYI	CCCAGC	2 cut(s)	243, 590
BsgI	GTGCAG	2 cut(s)	106, 156
BshFI	GGCC	4 cut(s)	96, 110, 595, 679
BsiHKAI	GWGCWC	3 cut(s)	120, 480, 572
BsiHKCI	CYCGRG	2 cut(s)	362, 479
BsiSI	CCGG	2 cut(s)	164, 289
BslI	CCNNNNNNNGG	3 cut(s)	87, 328, 704
BsmAI	GTCTC	5 cut(s)	68, 197, 431, 491, 527
BsmBI	CGTCTC	1 cut(s)	197
BsnI	GGCC	4 cut(s)	96, 110, 595, 679
Bso31I	GGTCTC	2 cut(s)	431, 527
BsoBI	CYCGRG	2 cut(s)	362, 479
Bsp1286I	GDGCHC	3 cut(s)	120, 480, 572
Bsp143I	GATC	1 cut(s)	601
Bsp19I	CCATGG	1 cut(s)	252
BspACI	CCGC	1 cut(s)	537
BspANI	GGCC	4 cut(s)	96, 110, 595, 679
BspHI	TCATGA	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	695
BspQI	GCTCTTC	1 cut(s)	577
BspTNI	GGTCTC	2 cut(s)	431, 527
BsrI	ACTGG	2 cut(s)	111, 413
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	1 cut(s)	601
BssT1I	CCWWGG	1 cut(s)	252
Bst6I	CTCTTC	2 cut(s)	423, 577
BstAPI	GCANNNNNTGC	2 cut(s)	143, 274
BstDSI	CCRYGG	1 cut(s)	252
BstEII	GGTNACC	1 cut(s)	188
BstENI	CCTNNNNNAGG	1 cut(s)	326
BstH2I	RGCGCY	1 cut(s)	421
BstHHI	GCGC	1 cut(s)	420
BstKTI	GATC	1 cut(s)	604
BstMAI	GTCTC	5 cut(s)	68, 197, 431, 491, 527
BstMBI	GATC	1 cut(s)	601
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 274
BstPI	GGTNACC	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	574
BstV2I	GAAGAC	1 cut(s)	148
BsuRI	GGCC	4 cut(s)	96, 110, 595, 679
BtgI	CCRYGG	1 cut(s)	252
BtsIMutI	CAGTG	2 cut(s)	118, 691
CciI	TCATGA	1 cut(s)	259
CfoI	GCGC	1 cut(s)	420
Cfr13I	GGNCC	1 cut(s)	593
CviAII	CATG	3 cut(s)	151, 253, 260
DpnI	GATC	1 cut(s)	603
DpnII	GATC	1 cut(s)	601
DraIII	CACNNNGTG	1 cut(s)	129
DriI	GACNNNNNGTC	1 cut(s)	255
Eam1104I	CTCTTC	2 cut(s)	423, 577
Eam1105I	GACNNNNNGTC	1 cut(s)	255
EarI	CTCTTC	2 cut(s)	423, 577
Ecl136II	GAGCTC	3 cut(s)	118, 478, 570
Eco130I	CCWWGG	1 cut(s)	252
Eco24I	GRGCYC	3 cut(s)	120, 480, 572
Eco31I	GGTCTC	2 cut(s)	431, 527
Eco53kI	GAGCTC	3 cut(s)	118, 478, 570
Eco88I	CYCGRG	2 cut(s)	362, 479
Eco91I	GGTNACC	1 cut(s)	188
EcoICRI	GAGCTC	3 cut(s)	118, 478, 570
EcoNI	CCTNNNNNAGG	1 cut(s)	326
EcoO65I	GGTNACC	1 cut(s)	188
EcoT14I	CCWWGG	1 cut(s)	252
EcoT38I	GRGCYC	3 cut(s)	120, 480, 572
ErhI	CCWWGG	1 cut(s)	252
Esp3I	CGTCTC	1 cut(s)	197
FaeI	CATG	3 cut(s)	154, 256, 263
FaiI	YATR	9 cut(s)	152, 254, 261, 266, 374, 398, 468, 470, 600
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FatI	CATG	3 cut(s)	150, 252, 259
FbaI	TGATCA	1 cut(s)	601
FblI	GTMKAC	1 cut(s)	345
Fnu4HI	GCNGC	1 cut(s)	588
FriOI	GRGCYC	3 cut(s)	120, 480, 572
Fsp4HI	GCNGC	1 cut(s)	588
FspBI	CTAG	6 cut(s)	6, 60, 341, 501, 633, 699
GlaI	GCGC	1 cut(s)	419
GluI	GCNGC	1 cut(s)	588
GsaI	CCCAGC	2 cut(s)	247, 594
HaeII	RGCGCY	1 cut(s)	421
HaeIII	GGCC	4 cut(s)	96, 110, 595, 679
HapII	CCGG	2 cut(s)	164, 289
HhaI	GCGC	1 cut(s)	420
Hin1II	CATG	3 cut(s)	154, 256, 263
Hin6I	GCGC	1 cut(s)	418
HinP1I	GCGC	1 cut(s)	418
HincII	GTYRAC	2 cut(s)	346, 370
HindII	GTYRAC	2 cut(s)	346, 370
HinfI	GANTC	1 cut(s)	231
HpaII	CCGG	2 cut(s)	164, 289
HphI	GGTGA	3 cut(s)	153, 182, 343
Hpy166II	GTNNAC	3 cut(s)	346, 370, 493
Hpy188I	TCNGA	2 cut(s)	403, 606
Hpy188III	TCNNGA	3 cut(s)	260, 325, 532
Hpy8I	GTNNAC	3 cut(s)	346, 370, 493
HpyAV	CCTTC	2 cut(s)	322, 382
HpyCH4IV	ACGT	2 cut(s)	206, 294
HpyCH4V	TGCA	5 cut(s)	123, 137, 268, 486, 613
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 274
HpySE526I	ACGT	2 cut(s)	206, 294
Hsp92II	CATG	3 cut(s)	154, 256, 263
HspAI	GCGC	1 cut(s)	418
Ksp22I	TGATCA	1 cut(s)	601
Kzo9I	GATC	1 cut(s)	601
LguI	GCTCTTC	1 cut(s)	577
LmnI	GCTCC	3 cut(s)	415, 475, 567
LpnPI	CCDG	8 cut(s)	124, 177, 257, 302, 394, 430, 576, 630
Lsp1109I	GCAGC	1 cut(s)	574
LweI	GCATC	2 cut(s)	264, 600
MaeI	CTAG	6 cut(s)	6, 60, 341, 501, 633, 699
MaeII	ACGT	2 cut(s)	206, 294
MaeIII	GTNAC	2 cut(s)	70, 188
MalI	GATC	1 cut(s)	603
MboI	GATC	1 cut(s)	601
MboII	GAAGA	3 cut(s)	148, 440, 564
MhlI	GDGCHC	3 cut(s)	120, 480, 572
MluCI	AATT	1 cut(s)	553
MlyI	GAGTC	1 cut(s)	225
MmeI	TCCRAC	1 cut(s)	405
MseI	TTAA	1 cut(s)	458
MslI	CAYNNNNRTG	1 cut(s)	329
MspA1I	CMGCKG	1 cut(s)	247
MspI	CCGG	2 cut(s)	164, 289
MspR9I	CCNGG	1 cut(s)	165
MwoI	GCNNNNNNNGC	2 cut(s)	143, 274
NciI	CCSGG	1 cut(s)	165
NcoI	CCATGG	1 cut(s)	252
NdeII	GATC	1 cut(s)	601
NlaIII	CATG	3 cut(s)	154, 256, 263
NlaIV	GGNNCC	1 cut(s)	695
NmuCI	GTSAC	2 cut(s)	70, 188
OliI	CACNNNNGTG	1 cut(s)	329
PagI	TCATGA	1 cut(s)	259
PciSI	GCTCTTC	1 cut(s)	577
PkrI	GCNGC	1 cut(s)	589
PleI	GAGTC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	225
Psp124BI	GAGCTC	3 cut(s)	120, 480, 572
PspEI	GGTNACC	1 cut(s)	188
PspFI	CCCAGC	2 cut(s)	243, 590
PspN4I	GGNNCC	1 cut(s)	695
PspPI	GGNCC	1 cut(s)	593
PvuII	CAGCTG	1 cut(s)	247
RseI	CAYNNNNRTG	1 cut(s)	329
SacI	GAGCTC	3 cut(s)	120, 480, 572
SalI	GTCGAC	1 cut(s)	344
SapI	GCTCTTC	1 cut(s)	577
SaqAI	TTAA	1 cut(s)	458
SatI	GCNGC	1 cut(s)	588
Sau3AI	GATC	1 cut(s)	601
Sau96I	GGNCC	1 cut(s)	593
SchI	GAGTC	1 cut(s)	225
ScrFI	CCNGG	1 cut(s)	165
SduI	GDGCHC	3 cut(s)	120, 480, 572
SfaNI	GCATC	2 cut(s)	264, 600
SmiMI	CAYNNNNRTG	1 cut(s)	329
SmlI	CTYRAG	2 cut(s)	278, 449
SmoI	CTYRAG	2 cut(s)	278, 449
Sse9I	AATT	1 cut(s)	553
SsiI	CCGC	1 cut(s)	537
SspMI	CTAG	6 cut(s)	6, 60, 341, 501, 633, 699
SstI	GAGCTC	3 cut(s)	120, 480, 572
StyD4I	CCNGG	1 cut(s)	163
StyI	CCWWGG	1 cut(s)	252
TaiI	ACGT	2 cut(s)	209, 297
TaqI	TCGA	2 cut(s)	345, 531
TaqII	GACCGA	1 cut(s)	455
TasI	AATT	1 cut(s)	553
Tru1I	TTAA	1 cut(s)	458
Tru9I	TTAA	1 cut(s)	458
TscAI	CASTG	2 cut(s)	118, 691
TseFI	GTSAC	2 cut(s)	70, 188
TseI	GCWGC	1 cut(s)	587
Tsp45I	GTSAC	2 cut(s)	70, 188
TspDTI	ATGAA	2 cut(s)	401, 675
TspRI	CASTG	2 cut(s)	118, 691
XagI	CCTNNNNNAGG	1 cut(s)	326
XmiI	GTMKAC	1 cut(s)	345
XspI	CTAG	6 cut(s)	6, 60, 341, 501, 633, 699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.