Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011662

Physical Location & Seq

Genomic Coordinates Reverse (-)

2342248 .. 2342910

Gene Structure 663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g03030.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGTGAGGAAAAGCAAGGGTCGTCAGAAGGTTGAGATGGTCAAGATGGCCAATGACAGCAACCTTCAGGTGACTTTCTCGAAGCGCCGCTCTGGCCTTTTCAAGAAGGCCAGTGAGCTTTGCACTCTGTGCGGAGCTGAGATAGCCATCATAGTGTTCTCGCCAGGGAGGAAGGTCTTTTCCTTTGGCCACCCCTGCGTGGAGTCTGTGATAGAGCGTTTCCTCACCCGAAACCCTCCTCACCATCAGAGCTCTGGTACCATGCAGCTCATTGAGGCTCACCGCAACGCTAACGTTCGGGAGCTCAATACCGAGCTGACTCAGGTTACCAACGACCTGGAGGTCGAGAGGAAAAGAGGAGAGGAGATTAACCGGGTGCGCAAGGCGAGCCAGGGGCATTGCTGGTGGGAGTCTCCTATTGAGGAGATGGAGCCGTCACAGTGTCAGCAGCTGCGTGGATCTCTAGATGAGCTGAAGAAGGCAGTGACTAAGCAGATTGATAGGCTTCTGATTCAGTCCACCTCAAACCCTAATCCTTTTTTTGCAGCGGGCAGCTCTGGTAATCCAGCTCTGATCCCCAACATGGGGTTTAATGGAGTGCCTGTTATGCCTCCTCATCCCCATCCTCATGCATGGAATCCAGCATTTGGTCGCTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009553 GO:0009657 GO:0009658 GO:0009791 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048316 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051049 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

221

Amino Acids

24.77

Weight (kDa)

9.5

Isoelectric Point (pI)

53.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	15 - 62	1.4e-24	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011662)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G36590 AT5G60440
fragaria_vesca	FvH4_2g03030
malus_domestica	MD05G1107900.v1.1 MD05G1114100.v1.1 MD10G1112300.v1.1
prunus_persica	Prupe.8G151900_v2.0.a1 Prupe.8G158400_v2.0.a1 Prupe.8G158500_v2.0.a1
pyrus_communis	pycom05g10880
rosa_chinensis	RchiOBHm_Chr6g0247821
rosa_laevigata	RLG00000015176
rosa_multiflora	Rmu_sc0001048.1_g000003
rosa_roxburghii	Rroxscaffold_180G00433220 Rroxscaffold_7G00213620
rosa_rugosa	Rorug05G0529300
rosa_samantha	Rh6AG044000 Rh6BG038700 Rh6CG037500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	341
Acc16I	TGCGCA	1 cut(s)	380
Acc65I	GGTACC	1 cut(s)	257
AccB1I	GGYRCC	1 cut(s)	257
AccB7I	CCANNNNNTGG	1 cut(s)	647
AccBSI	CCGCTC	1 cut(s)	90
AciI	CCGC	4 cut(s)	88, 132, 283, 548
AclI	AACGTT	1 cut(s)	294
AclWI	GGATC	2 cut(s)	466, 568
AcoI	YGGCCR	2 cut(s)	48, 187
AcuI	CTGAAG	2 cut(s)	50, 494
AdeI	CACNNNGTG	1 cut(s)	129
AfaI	GTAC	1 cut(s)	259
AfiI	CCNNNNNNNGG	5 cut(s)	199, 583, 584, 585, 647
AgsI	TTSAA	1 cut(s)	103
AjnI	CCWGG	3 cut(s)	163, 336, 390
Alw21I	GWGCWC	2 cut(s)	254, 306
Alw26I	GTCTC	1 cut(s)	417
AlwI	GGATC	2 cut(s)	466, 568
AlwNI	CAGNNNCTG	1 cut(s)	451
AoxI	GGCC	4 cut(s)	48, 94, 108, 187
ApeKI	GCWGC	5 cut(s)	265, 448, 451, 545, 552
Asp718I	GGTACC	1 cut(s)	257
AspLEI	GCGC	2 cut(s)	87, 381
AsuC2I	CCSGG	1 cut(s)	374
AsuHPI	GGTGA	5 cut(s)	16, 82, 217, 233, 272
BalI	TGGCCA	2 cut(s)	50, 189
BanI	GGYRCC	1 cut(s)	257
BanII	GRGCYC	2 cut(s)	254, 306
Bbv12I	GWGCWC	2 cut(s)	254, 306
BbvI	GCAGC	5 cut(s)	277, 438, 460, 557, 564
BccI	CCATC	6 cut(s)	31, 40, 155, 252, 421, 630
BceAI	ACGGC	1 cut(s)	418
BciT130I	CCWGG	3 cut(s)	165, 338, 392
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	1 cut(s)	417
BfaI	CTAG	1 cut(s)	464
BfoI	RGCGCY	1 cut(s)	88
BglI	GCCNNNNNGGC	1 cut(s)	93
BisI	GCNGC	6 cut(s)	88, 266, 449, 452, 546, 553
BlsI	GCNGC	6 cut(s)	89, 267, 450, 453, 547, 554
Bme1390I	CCNGG	4 cut(s)	165, 338, 374, 392
BmiI	GGNNCC	2 cut(s)	259, 432
BmrFI	CCNGG	4 cut(s)	165, 338, 374, 392
BpmI	CTGGAG	1 cut(s)	359
BpuMI	CCSGG	1 cut(s)	374
BsaBI	GATNNNNATC	1 cut(s)	146
BsaJI	CCNNGG	2 cut(s)	164, 391
BsaXI	ACNNNNNCTCC	2 cut(s)	588, 618
Bsc4I	CCNNNNNNNGG	5 cut(s)	199, 583, 584, 585, 647
Bse1I	ACTGG	1 cut(s)	111
Bse3DI	GCAATG	1 cut(s)	397
Bse8I	GATNNNNATC	1 cut(s)	146
BseBI	CCWGG	3 cut(s)	165, 338, 392
BseDI	CCNNGG	2 cut(s)	164, 391
BseGI	GGATG	2 cut(s)	616, 622
BseJI	GATNNNNATC	1 cut(s)	146
BseLI	CCNNNNNNNGG	5 cut(s)	199, 583, 584, 585, 647
BseMI	GCAATG	1 cut(s)	397
BseMII	CTCAG	2 cut(s)	129, 335
BseNI	ACTGG	1 cut(s)	111
BseRI	GAGGAG	5 cut(s)	228, 372, 377, 437, 603
BseXI	GCAGC	5 cut(s)	277, 438, 460, 557, 564
BshFI	GGCC	4 cut(s)	50, 96, 110, 189
BshNI	GGYRCC	1 cut(s)	257
BsiHKAI	GWGCWC	2 cut(s)	254, 306
BsiSI	CCGG	1 cut(s)	373
BslI	CCNNNNNNNGG	5 cut(s)	199, 583, 584, 585, 647
BsmAI	GTCTC	1 cut(s)	417
BsnI	GGCC	4 cut(s)	50, 96, 110, 189
Bsp1286I	GDGCHC	2 cut(s)	254, 306
Bsp143I	GATC	2 cut(s)	458, 573
BspACI	CCGC	4 cut(s)	88, 132, 283, 548
BspANI	GGCC	4 cut(s)	50, 96, 110, 189
BspCNI	CTCAG	2 cut(s)	130, 334
BspLI	GGNNCC	2 cut(s)	259, 432
BspPI	GGATC	2 cut(s)	466, 568
BspT107I	GGYRCC	1 cut(s)	257
BsrBI	CCGCTC	1 cut(s)	90
BsrDI	GCAATG	1 cut(s)	397
BsrI	ACTGG	1 cut(s)	111
BssECI	CCNNGG	2 cut(s)	164, 391
BssMI	GATC	2 cut(s)	458, 573
Bst2UI	CCWGG	3 cut(s)	165, 338, 392
Bst4CI	ACNGT	1 cut(s)	441
BstAPI	GCANNNNNTGC	1 cut(s)	129
BstC8I	GCNNGC	2 cut(s)	388, 550
BstDEI	CTNAG	3 cut(s)	138, 321, 489
BstEII	GGTNACC	1 cut(s)	325
BstF5I	GGATG	2 cut(s)	616, 622
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	2 cut(s)	87, 381
BstKTI	GATC	2 cut(s)	461, 576
BstMAI	GTCTC	1 cut(s)	417
BstMBI	GATC	2 cut(s)	458, 573
BstMWI	GCNNNNNNNGC	6 cut(s)	93, 129, 143, 195, 387, 607
BstNI	CCWGG	3 cut(s)	165, 338, 392
BstPI	GGTNACC	1 cut(s)	325
BstSCI	CCNGG	4 cut(s)	163, 336, 372, 390
BstV1I	GCAGC	5 cut(s)	277, 438, 460, 557, 564
BstX2I	RGATCY	1 cut(s)	458
BstXI	CCANNNNNNTGG	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	458
BsuRI	GGCC	4 cut(s)	50, 96, 110, 189
BtsCI	GGATG	2 cut(s)	616, 622
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	3 cut(s)	118, 446, 489
Cac8I	GCNNGC	2 cut(s)	388, 550
CaiI	CAGNNNCTG	1 cut(s)	451
CfoI	GCGC	2 cut(s)	87, 381
Csp6I	GTAC	1 cut(s)	258
CviAII	CATG	4 cut(s)	262, 583, 629, 633
CviQI	GTAC	1 cut(s)	258
DdeI	CTNAG	3 cut(s)	138, 321, 489
DpnI	GATC	2 cut(s)	460, 575
DpnII	GATC	2 cut(s)	458, 573
DraIII	CACNNNGTG	1 cut(s)	129
DrdI	GACNNNNNNGTC	1 cut(s)	341
DseDI	GACNNNNNNGTC	1 cut(s)	341
EaeI	YGGCCR	2 cut(s)	48, 187
Ecl136II	GAGCTC	2 cut(s)	252, 304
Eco24I	GRGCYC	2 cut(s)	254, 306
Eco53kI	GAGCTC	2 cut(s)	252, 304
Eco57I	CTGAAG	2 cut(s)	50, 494
Eco91I	GGTNACC	1 cut(s)	325
EcoICRI	GAGCTC	2 cut(s)	252, 304
EcoO65I	GGTNACC	1 cut(s)	325
EcoRII	CCWGG	3 cut(s)	163, 336, 390
EcoT22I	ATGCAT	1 cut(s)	634
EcoT38I	GRGCYC	2 cut(s)	254, 306
FaeI	CATG	4 cut(s)	265, 586, 632, 636
FaiI	YATR	6 cut(s)	152, 263, 584, 608, 630, 634
FatI	CATG	4 cut(s)	261, 582, 628, 632
FauI	CCCGC	1 cut(s)	541
Fnu4HI	GCNGC	6 cut(s)	88, 266, 449, 452, 546, 553
FokI	GGATG	2 cut(s)	603, 609
FriOI	GRGCYC	2 cut(s)	254, 306
Fsp4HI	GCNGC	6 cut(s)	88, 266, 449, 452, 546, 553
FspBI	CTAG	1 cut(s)	464
FspI	TGCGCA	1 cut(s)	380
GlaI	GCGC	2 cut(s)	86, 380
GluI	GCNGC	6 cut(s)	88, 266, 449, 452, 546, 553
GsuI	CTGGAG	1 cut(s)	359
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	4 cut(s)	50, 96, 110, 189
HapII	CCGG	1 cut(s)	373
HhaI	GCGC	2 cut(s)	87, 381
Hin1II	CATG	4 cut(s)	265, 586, 632, 636
Hin6I	GCGC	2 cut(s)	85, 379
HinP1I	GCGC	2 cut(s)	85, 379
HinfI	GANTC	5 cut(s)	203, 319, 410, 511, 637
HpaII	CCGG	1 cut(s)	373
HphI	GGTGA	5 cut(s)	16, 82, 217, 233, 272
Hpy166II	GTNNAC	1 cut(s)	519
Hpy188I	TCNGA	5 cut(s)	27, 249, 510, 573, 662
Hpy188III	TCNNGA	6 cut(s)	43, 79, 103, 299, 346, 464
Hpy8I	GTNNAC	1 cut(s)	519
HpyAV	CCTTC	5 cut(s)	22, 74, 100, 166, 472
HpyCH4III	ACNGT	1 cut(s)	441
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	4 cut(s)	123, 265, 545, 632
HpyF10VI	GCNNNNNNNGC	6 cut(s)	93, 129, 143, 195, 387, 607
HpyF3I	CTNAG	3 cut(s)	138, 321, 489
HpySE526I	ACGT	1 cut(s)	294
Hsp92II	CATG	4 cut(s)	265, 586, 632, 636
HspAI	GCGC	2 cut(s)	85, 379
KpnI	GGTACC	1 cut(s)	261
Kzo9I	GATC	2 cut(s)	458, 573
LmnI	GCTCC	3 cut(s)	134, 301, 430
Lsp1109I	GCAGC	5 cut(s)	277, 438, 460, 557, 564
MaeI	CTAG	1 cut(s)	464
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	4 cut(s)	70, 325, 435, 484
MalI	GATC	2 cut(s)	460, 575
MbiI	CCGCTC	1 cut(s)	90
MboI	GATC	2 cut(s)	458, 573
MboII	GAAGA	2 cut(s)	487, 649
MflI	RGATCY	1 cut(s)	458
MhlI	GDGCHC	2 cut(s)	254, 306
MlsI	TGGCCA	2 cut(s)	50, 189
MluNI	TGGCCA	2 cut(s)	50, 189
MlyI	GAGTC	3 cut(s)	212, 313, 419
Mox20I	TGGCCA	2 cut(s)	50, 189
Mph1103I	ATGCAT	1 cut(s)	634
MscI	TGGCCA	2 cut(s)	50, 189
MseI	TTAA	2 cut(s)	369, 591
MslI	CAYNNNNRTG	2 cut(s)	152, 627
Msp20I	TGGCCA	2 cut(s)	50, 189
MspA1I	CMGCKG	2 cut(s)	451, 548
MspI	CCGG	1 cut(s)	373
MspR9I	CCNGG	4 cut(s)	165, 338, 374, 392
MvaI	CCWGG	3 cut(s)	165, 338, 392
MwoI	GCNNNNNNNGC	6 cut(s)	93, 129, 143, 195, 387, 607
NciI	CCSGG	1 cut(s)	374
NdeII	GATC	2 cut(s)	458, 573
NlaIII	CATG	4 cut(s)	265, 586, 632, 636
NlaIV	GGNNCC	2 cut(s)	259, 432
NmuCI	GTSAC	3 cut(s)	70, 435, 484
NsbI	TGCGCA	1 cut(s)	380
NsiI	ATGCAT	1 cut(s)	634
PfeI	GAWTC	2 cut(s)	511, 637
PflMI	CCANNNNNTGG	1 cut(s)	647
PkrI	GCNGC	6 cut(s)	89, 267, 450, 453, 547, 554
PleI	GAGTC	3 cut(s)	211, 313, 418
PpsI	GAGTC	3 cut(s)	211, 313, 418
Psp124BI	GAGCTC	2 cut(s)	254, 306
Psp1406I	AACGTT	1 cut(s)	294
Psp6I	CCWGG	3 cut(s)	163, 336, 390
PspEI	GGTNACC	1 cut(s)	325
PspGI	CCWGG	3 cut(s)	163, 336, 390
PspN4I	GGNNCC	2 cut(s)	259, 432
PstNI	CAGNNNCTG	1 cut(s)	451
PsuI	RGATCY	1 cut(s)	458
PvuII	CAGCTG	1 cut(s)	451
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
RseI	CAYNNNNRTG	2 cut(s)	152, 627
SacI	GAGCTC	2 cut(s)	254, 306
SaqAI	TTAA	2 cut(s)	369, 591
SatI	GCNGC	6 cut(s)	88, 266, 449, 452, 546, 553
Sau3AI	GATC	2 cut(s)	458, 573
SchI	GAGTC	3 cut(s)	212, 313, 419
ScrFI	CCNGG	4 cut(s)	165, 338, 374, 392
SduI	GDGCHC	2 cut(s)	254, 306
SmiMI	CAYNNNNRTG	2 cut(s)	152, 627
SsiI	CCGC	4 cut(s)	88, 132, 283, 548
SspMI	CTAG	1 cut(s)	464
SstI	GAGCTC	2 cut(s)	254, 306
StyD4I	CCNGG	4 cut(s)	163, 336, 372, 390
TaaI	ACNGT	1 cut(s)	441
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	2 cut(s)	80, 345
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	2 cut(s)	511, 637
Tru1I	TTAA	2 cut(s)	369, 591
Tru9I	TTAA	2 cut(s)	369, 591
TscAI	CASTG	3 cut(s)	118, 446, 489
TseFI	GTSAC	3 cut(s)	70, 435, 484
TseI	GCWGC	5 cut(s)	265, 448, 451, 545, 552
Tsp45I	GTSAC	3 cut(s)	70, 435, 484
TspRI	CASTG	3 cut(s)	118, 446, 489
Van91I	CCANNNNNTGG	1 cut(s)	647
XbaI	TCTAGA	1 cut(s)	463
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XspI	CTAG	1 cut(s)	464
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.